These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9905#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 947 fasta sequence [AGCCAAGATTCGGCACGAGGCAAATGAATAGGTTTACCACCTTATAGTGTAAAAACCCAACTATTGCAATACAGTTGAGAAATGATAATTTCTCAAGTGAAATGTTAATATACTTCTAAAATTTACTGTATTGATTAGGTTATTGTATGAAGTGAGTATGCTTTTGAAAAATATGGATTGAACATTGCTATATCATAGATGTTAGGATAGTCTAGCTTCAATTGACTCATGATTTTAACTATGACAGACAACCTTAACTCTTGTATAAAAGGTAAAATTGGAAATAGAGTTATACATTGATATAAGAAAATGGAACCAAATAGCAAAAACACTTGAAGTATGTTGAATGTATTTTTTTGAACCAAATGGACTAACTTTTGTATATAATTTATTTATTTTTATACCTAATTGTCAAAATGTCTGTATTTTCTTTTGTGTCTTTTCAGGAGAATGTCGCACAGTAGGACAAGAATGTTCCAAGACTGTATTTTCTCCATGTTGTGAAAACTTTTACTGTGGTTTAAATACATTATTTAGTGGTCAATGTCAGCCATGTCTTGCAGGTGGATATTTCTGTTGGACTGATAAAGAATGTTGTTCTGGAAAATGCAGTTGGCTTAAATGT-ACAGAT-CCAATAAAAGA-TGTTGTTGAAAGGTTGACTGGTTAGAAATAAAAAGTATGGGAGATTATTACAAGTAGTAAAACAGTTTGTTACAATTTAAATGTTCAATCATTCTAATGAGATTTTCTGTTTATCTACTCAATTCAAATTATCAGTAGTACATTATATTCACTTCACATTTTTTTTGCGACAGAATAAAATACACACATTTGATTATGTATGAAAATAATATTTAATTCAATTTGCTTCTATAGGTGATCATCTATTATTGATTTGTTTTTGTATTGCCAAATTTTGTATGTTCAAAAAAATAAATACAGAGTTG] [+] EMBL CD081452 [AGCCAAGATTCGGCACGAGGCAAATGAATAGGTTTACCACCTTATAGTGTAAAAACCCAACTATTGCAATACAGTTGAGAAATGATAATTTCTCAAGTGAAATGTTAATATACTTCTAAAATTTACTGTATTGATTAGGTTATTGTATGAAGTGAGTATGCTTTTGAAAAATATGGATTGAACATTGCTATATCATAGATGTTAGGATAGTCTAGCTTCAATTGACTCATGATTTTAACTATGACAGACAACCTTAACTCTTGTATAAAAGGTAAAATTGGAAATAGAGTTATACATTGATATAAGAAAATGGAACCAAATAGCAAAAACACTTGAAGTATGTTGAATGTATTTTTTTGAACCAAATGGACTAACTTTTGTATATAATTTATTTATTTTTATACCTAATTGTCAAAATGTCTGTATTTTCTTTTGTGTCTTTTCAGGAGAATGTCGCACAGTAGGACAAGAATGTTCCAAGACTGTATTTTCTCCATGTTGTGAAAACTTTTACTGTGGTTTAAATACATTATTTAGTGGTCAATGTCAGCCATGTCTTGCAGGTGGATATTTCTGTTGGACTGATAAAGAATGTTGTTCTGGAAAATGCAGTTGGCTTAAATGT ACAGAT CCAATAAAAGA TGTTGTTGAAAGGTTGAC ] [-] EMBL CD075275 [ TTATTTATTTTTATACCTAATGNTCAAAATGTCTGTATTTTCTTTTGTGTCTTTTCAGGAGAATGTCGCACAGTAGGACAAGAATGTTCCAAGACTGTATTTTCTCCATGTTGTGAAAACTTTTACTGTGGTTTAAATACATTATTTAGTGGTCAATGTCAGCCATGTCTTGCAGGTGGATATTTCTGTTGGACTGATAAAGAATGTTGTTCTGGAAAATGCAGTTGGCTTAAATGT ACAGAT CCAATAAAAGA TGTTGTTGAAAGGTTGACTGGTTAGAAATAAAAAGTATGGGAGATTATTACAAGTAGTAAAACAGTTTGTTACAATTTAAATGTTCAATCATTCTAATGAGATTTTCTGTTTATCTACTCAATTCAAATTATCAGTAGTACATTATATTCACTTCACATTTTTTTTGCGACAGAATAAAATACACACATTTGATTATGTATGAAAATAATATTTAATTCAATTTGCTTCTATAGGTGATCATCTATTATTGATTTGTTTTTGTATTGCCAAATTTTGTATGTTCAAAAAAATAAATACAGAGTTG] [-] EMBL BF440150 [ TGTCTTGCAGGGGGATATTTCTGTTGGACTGATAAAGAATGTTGTTCTGGAAAATGCAGTTGGCTTAAATGTGACAGATCCCAATAAAAGATTTTTTTTGAAAGGTTGACTGGTTAGAAATAAAAAGTATGGGAGATTTTTACAAGTAGTAAAACAGTTTGTTACAATTTAAATGTTCAATCATTCTAATGAGATTTTCTGTTTATCTACTCAATTCAAATTATCAGTAGTACATTATATTCACTTCACATTTTTTTTGCGACAGAATAAAATACACACATTTGATTATGTATGAAAATAATATTTAATTCAATTTGCTTCTATAGGTGATCATCTATTATTGATTTGTTTTTGTATTGCCAAATTTTGTATGTTCAAAAAAATAAATACAGAGTTG] consensusID : consensus_9905#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 608 fasta sequence [AGGCCATTAATTCGGCACGAGGTTTGTAACCATCGTCATG-AATCAATTTTATTATGCAATATTAATGGTAATGATTGTCACTTTTAGTTATTTCAATGTTGTATCAGGAGAATGTCGCACAGTAGGACAAGAATGTTCCAAGACTGTATTTTCTCCATGTTGTGAAAACTTTTACTGTGGTTTAAATACATTATTTAGTGGTCAATGTCAGCCATGTCTTGCAGGTGGATATTTCTGTTGGACTGATAAAGAATGTTGTTCTGGAAAATGCAGTTGGCTTAAATGTACAGATCCAATAAAAGATGTTGTTGAAAGGTTGACTGGTTAGAAATAAAAAGTATGGGAGATTATTACAAGTAGTAAAACAGTTTGTTACAATTTAAATGTTCAATCATTCTAATGAGATTTTCTGTTTATCTACTCAATTCAAATTATCAGTAGTACATTATATTCACTTCACATTTTTTTTGCGACAGAATAAAATACACACATTTGATTATGTATGAAAATAATATTTAATTCAATTTGCTTCTATAGGTGATCATCTATTATTGATTTGTTTTTGTATTGCCAAATTTTGTATGTTCAAAAAAATAAATACAAAGTTG] [+] EMBL CD081697 [AGGCCATTAATTCGGCACGAGGTTTGTAACCATCGTCATG AATCAATTTTATTATGCAATATTAATGGTAATGATTGTCACTTTTAGTTATTTCAATGTTGTATCAGGAGAATGTCGCACAGTAGGACAAGAATGTTCCAAGACTGTATTTTCTCCATGTTGTGAAAACTTTTACTGTGGTTTAAATACATTATTTAGTGGTCAATGTCAGCCATGTCTTGCAGGTGGATATTTCTGTTGGACTGATAAAGAATGTTGTTCTGGAAAATGCAGTTGGCTTAAATGTACAGATCCAATAAAAGATGTTGTTGAAAGGTTGACTGGTTAGAAATAAAAAGTATGGGAGATTATTACAAGTAGTAAAACAGTTTGTTACAATTTAAATGTTCAATCATTCTAATGAGATTTTCTGTTTATCTACTCAATTCAAATTATCAGTAGTACATTATATTCACTTCACATTTTTTTTGCGACAGAATAAAATACACACATTTGATTATGTATGAAAATAATATTTAATTCAATTTGCTTCTATAGGTGATCATCTATTATTGATTTGTTTTTGTATTGCCAAATTTTGTATGTTCAAAAAAATAAATACAAAGTT ] [+] EMBL CD078532 [ gttgcattTTTGTAACCATCGTCATG AATCAATTTTATTATGCAATATTAATGGTAATGATTGTCACTTTTAGTTATTTCAATGTTGTATCAGGAGAATGTCGCACAGTAGGACAAGAATGTTCCAAGACTGTATTTTCTCCATGTTGTGAAAACTTTTACTGTGGTTTAAATACATTATTTAGTGGTCAATGTCAGCCATGTCTTGCAGGTGGATATTTCTGTTGGACTGATAAAGAATGTTGTTCTGGAAAATGCAGTTGGCTTAATTGTACAGATCCAATAAAAGATGTTGTTGAAAGGTTGACTGGTTAGAAATAAAAAGTATGGGAGATTATTACAAGTAGTAAAACAGTTTGTTACAATTTAAATGTTCAATCATTCTAATGAGATTTTCTGTTTATCTACTCAATTCAAATTATCAGTAGTACATTATATTCACTTCACATTTTTTTTGCGACAGAATAAAATACACACATTTGATTATGTATGAAAATAATATTTAATTCAATTTGCTTCTATAGGTGATCATCTATTATTGATTTGTTTTTGTATTG ] [+] EMBL AW466244 [ ACCATCGTCATGCAATCAATTTTATTNTGCNATATTAATGGTAATGATTGTCACTTTTAGTTATTNCAANGTTGTATCNGGAGAATGTCGCACNGTAGGACNAGAATGTNCCAAGACTGTATTTTCTCCATGTTGTGAAAACTTTTACTGTGGTTTAAATACATTATCTAGTGGTCAATGTCAGCCATGTCTTGCAGGTGGATATTTCTGTTGGACTGANAAAGAATGTTGTTCTGGAAAATGCAGTTGGCTTAAATGTACAGATCCAATAAAAGATGTTGTTGAAAGGTTGACTGGTTAGAAATAAAAAGTATGGGAGATTATTACAAGTAGTAAAACAGTTTGTTACAATTTAAATGTTCAATCATTCTAATGAGATTTTCTGTTTATCTACTCAATTCAAATTATCA ] [+] EMBL SMAA18457 [ ATCGTCATG AATCAATTTTATTATGCAATATTAATGGTAATGATTGTCACTTTTAGTTATTTCAATGTTGTATCAGGAGAATGTCGCACAGTAGGACAAGAATGTTCCAAGACTGTATTTTCTCCATGTTGTGAAAACTTTTACTGTGGTTTAAATACATTATTTAGTGGNCAATGTCAGCCAT ] [+] EMBL AW017373 [ GTCATG AATCAATTTTATTATGCAATATTAATGGTAATGATTGTCACTTTTAGTTATTTCAATGTTGTATCAGGAGAATGTCGCACAGTAGGACAAGAATGTTCCAAGACTGTATTTTCTCCATGTTGTGAAAACTTTTACTGTGGTTTAAATACATTATTTAGTGGTCAATGTCAGCCATGTCTTGCAGGTGGATATTTCTGTTGGACTGATCAAGAATGTTGTTCTGGAAAATGCAGATGGCTTAAATGTACAGATCCAATAAAAGATGTTGTTGAAAGGTTGACTGGTTAGAAATAAAAAGTATGGCAGATTATTACAAGTAGTAAAACAGTTTGTTACAATTTAAATGTTCAATCATTCTAATGAGATTTCCTGTTTATCTACTCAATTCAAATTATCAGTAGTACATTATAT ] [+] EMBL CD082781 [ ATTANTGGTAATGATTGTCACTTTTAGTTATTTCAATGTTGTATCAGGAGAATGTCGCACAGTAGGACAAGAATGTTCCAAGACTGTATTTTCTCCATGTTGTGAAAACTTTTACTGTGGTTTAAATACATTATTTAGTGGTCAATGTCAGCCATGTCTTGCAGGTGGATATTTCTGTTGGACTGATAAAGAATGTTGTTCTGGAAAATGCAGTTGGCTTAAATGTACAGATCCAATAAAAGATGTTGTTGAAAGGTTGACTGGTTAGAAATAAAAAGTATGGGAGATTATTACAAGTAGTAAAACAGTTTGTTACAATTTAAATGTTCAATCATTCTAATGAGATTTTCTGTTTATCTACTCAATTCAAATTATCAGTAGTACATTATATTCACTTCACATTTTTTTTGCGACAGAATAAAATACACACATTTGATTATGTATGAAAATAATATTTAATTCAATTTGCTTCTATAGGTGATCATCTATTATTGATTTGTTTTTGTATTGCCAAATTTTGTATGTTCAAAAAAATAAATACAGAGTT ] [-] EMBL CD076373 [ acCCATGTTTTGCAGGTGGATATTTTTGTTGGACTGATAAAAAATGTTGTTTTGGAAAATCCAGTTGGCTTAAATGTCCAGATCCAATAAAAAATGTTGTTGAAAGGTTGACTGGTTAAAAATAAAAAGTATGGGGGATTATTCCAAGTAGTAAACCAGTTTGTTCCAATTTAAATGTTCAATCATTTTAATGAGATTTTTTGTTTATTTACTCAATTCAAATTATCAGTAGTACATTATATTCCCTTCCCATTTTTTTTGCGCCAGAATAAAATACCCCCATTTGATTATGTATGAAAATAAAATTTAATTCAATTTGCTTTTATAGGGGATCATCTATTATTGATTTGTTTTTGTATTGCCAAATTTTGTATGTTCAAAAAAATAAAAACAAAGTTG] consensusID : consensus_9905#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 153 fasta sequence [TGTAACCATGCTCATGAATCAATTTTATTATGCAATATTAATGTAATGATTGTCACTTTTAGTTATTTCAATGTTGTATCCAGGAGAATGTGC-CACAGTAGGACAGATGTTCCAGACTGTATTTCCCATGTGTGAAACTTTACTGTGTTAATA] [+] EMBL SMAA98638 [TGTAACCATGCTCATGAATCAATTTTATTATGCAATATTAATGTAATGATTGTCACTTTTAGTTATTTCAATGTTGTATCCAGGAGAATGTGC CACAGTAGGACAGATGTTCCAGACTGTATTTCCCATGTGTGAAACTTTACTGTGTTAATA] [+] EMBL AA952760 [TGTAACCATGCTCATGAATCAATTTTATTATGCAATATTAATGTAATGATTGTCACTTTTAGTTATTTCAATGTTGTATCCAGGAGAATGTGCACA AGTAGGACAGATGTTCCAGACTGTATTTCCCATGTGTGAAACTTTACTGTGTTAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9905#1 ------------------------------------------------------------ consensus_9905#2 ------------------------------------------------------------ consensus_9905#0 AGCCAAGATTCGGCACGAGGCAAATGAATAGGTTTACCACCTTATAGTGTAAAAACCCAA 60 consensus_9905#1 ------------------------------------------------------------ consensus_9905#2 ------------------------------------------------------------ consensus_9905#0 CTATTGCAATACAGTTGAGAAATGATAATTTCTCAAGTGAAATGTTAATATACTTCTAAA 120 consensus_9905#1 ------------------------------------------------------------ consensus_9905#2 ------------------------------------------------------------ consensus_9905#0 ATTTACTGTATTGATTAGGTTATTGTATGAAGTGAGTATGCTTTTGAAAAATATGGATTG 180 consensus_9905#1 ------------------------------------------------------------ consensus_9905#2 ------------------------------------------------------------ consensus_9905#0 AACATTGCTATATCATAGATGTTAGGATAGTCTAGCTTCAATTGACTCATGATTTTAACT 240 consensus_9905#1 ------------------------------------------------------------ consensus_9905#2 ------------------------------------------------------------ consensus_9905#0 ATGACAGACAACCTTAACTCTTGTATAAAAGGTAAAATTGGAAATAGAGTTATACATTGA 300 consensus_9905#1 ----------------------------AGGCCATTAATTCGGCACGAGGTTTGTAACCA 32 consensus_9905#2 ----------------------------------------------------TGTAACCA 8 consensus_9905#0 TATAAGAAAATGGAACCAAATAGCAAAAACACTTGAAGTATGTTGAATGTATTTTTTTGA 360 * * * consensus_9905#1 TCGTCATGAATCAATTTTATTATGCAAT--ATTAATGGTAATG----ATTGTCA-----C 81 consensus_9905#2 TGCTCATGAATCAATTTTATTATGCAAT--ATTAATG-TAATG----ATTGTCA-----C 56 consensus_9905#0 ACCAAATGGACTAACTTTTGTATATAATTTATTTATTTTTATACCTAATTGTCAAAATGT 420 *** * ** *** *** *** *** ** * ** ******* consensus_9905#1 TTTTAGTTATTTCAATGTTGTATC-AGGAGAATGTCGCACAGTAGGACAAGAATGTTCCA 140 consensus_9905#2 TTTTAGTTATTTCAATGTTGTATCCAGGAGAATGTGCCACAGTAGGACAG--ATGTTCCA 114 consensus_9905#0 CTGTATTTTCTTTTGTGTCTTTTC-AGGAGAATGTCGCACAGTAGGACAAGAATGTTCCA 479 * ** ** ** *** * ** ********** ************ ******** consensus_9905#1 AGACTGTATTTTCTCCATGTTGTGAAAACTTTTACTGTGGTTTAAATACATTATTTAGTG 200 consensus_9905#2 -GACTGTATTTCC--CATGT-GTGAAA--CTTTACTGTGTT---AATA------------ 153 consensus_9905#0 AGACTGTATTTTCTCCATGTTGTGAAAACTTTTACTGTGGTTTAAATACATTATTTAGTG 539 ********** * ***** ****** ********* * **** consensus_9905#1 GTCAATGTCAGCCATGTCTTGCAGGTGGATATTTCTGTTGGACTGATAAAGAATGTTGTT 260 consensus_9905#2 ------------------------------------------------------------ consensus_9905#0 GTCAATGTCAGCCATGTCTTGCAGGTGGATATTTCTGTTGGACTGATAAAGAATGTTGTT 599 consensus_9905#1 CTGGAAAATGCAGTTGGCTTAAATGTACAGATCCAATAAAAGATGTTGTTGAAAGGTTGA 320 consensus_9905#2 ------------------------------------------------------------ consensus_9905#0 CTGGAAAATGCAGTTGGCTTAAATGTACAGATCCAATAAAAGATGTTGTTGAAAGGTTGA 659 consensus_9905#1 CTGGTTAGAAATAAAAAGTATGGGAGATTATTACAAGTAGTAAAACAGTTTGTTACAATT 380 consensus_9905#2 ------------------------------------------------------------ consensus_9905#0 CTGGTTAGAAATAAAAAGTATGGGAGATTATTACAAGTAGTAAAACAGTTTGTTACAATT 719 consensus_9905#1 TAAATGTTCAATCATTCTAATGAGATTTTCTGTTTATCTACTCAATTCAAATTATCAGTA 440 consensus_9905#2 ------------------------------------------------------------ consensus_9905#0 TAAATGTTCAATCATTCTAATGAGATTTTCTGTTTATCTACTCAATTCAAATTATCAGTA 779 consensus_9905#1 GTACATTATATTCACTTCACATTTTTTTTGCGACAGAATAAAATACACACATTTGATTAT 500 consensus_9905#2 ------------------------------------------------------------ consensus_9905#0 GTACATTATATTCACTTCACATTTTTTTTGCGACAGAATAAAATACACACATTTGATTAT 839 consensus_9905#1 GTATGAAAATAATATTTAATTCAATTTGCTTCTATAGGTGATCATCTATTATTGATTTGT 560 consensus_9905#2 ------------------------------------------------------------ consensus_9905#0 GTATGAAAATAATATTTAATTCAATTTGCTTCTATAGGTGATCATCTATTATTGATTTGT 899 consensus_9905#1 TTTTGTATTGCCAAATTTTGTATGTTCAAAAAAATAAATACAAAGTTG 608 consensus_9905#2 ------------------------------------------------ consensus_9905#0 TTTTGTATTGCCAAATTTTGTATGTTCAAAAAAATAAATACAGAGTTG 947 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||