cluster # 9907

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Schistosoma mansoni
cluster # 9907 cluster # 9907 Sequences # 12 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9907#0 length = 388 sequences # 8
consensus_9907#1 length = 375 sequences # 1

consensus_9907#2 length = 351 sequences # 2
consensus_9907#3 length = 347 sequences # 1

consensusID : consensus_9907#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 388
fasta sequence

                              [CATCGTACACC-TCAGTCAAACCATCACAGATCCC-GGCAACGCCACGT-ACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAA----TTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTG]

[+] EMBL CD122606             [CATCGTACACC TCAGTCAAACCATCACAGATCCC GGCAACGCCACGT ACCAATCCACTTCGCTTCAATGATACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTTGCTTCAATGTTACGTACGAATCACTTAATCACCATCAATCAAACCATCACACATCCAGGCAACGCCACGAACCAATCCACTTTGCTTGAATGTTACGCACGAA    TTAATCACTATCAGTCAAACCATCACTGATCCAGGCGACGCTACTGACTAATCCACTTG]
[-] EMBL CD128758             [  ttaatCACCATCAGTCAAACCATCACAGATCCC GGCAACGCAACGT ACCAATCCACTTCGCTTCAATGTCACGAACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACC                                                                                                                                     ]
[+] EMBL CD122695             [               GTCAAACCATCACAGATCCC GGGAACGCCACGTGACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAA    TTACTCACTATCAGTCAAACCATCACAGATCCCGGCAGCGCCACGTACCAATCC     ]
[+] EMBL CD159922             [                         CACAGATCCC GGCAACGCCACGT ACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCATAGATCCCGGCAATGCCACGTACCAGTCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAA                                                                                                                            ]
[+] EMBL CD159834             [                         CACAGATCCC GGCAACGCCACGT ACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAGTCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCA                                                                                                                             ]
[-] EMBL CD159848             [                          ACAGATCCCGGGCAACGCCACGT ACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGT                                            ]
[-] EMBL CD122626             [                          ACAGATCCC CGCAACGCCACGT ACCAATCCACATCGCTTCAATGTTACGTACGAATCACTTAATCACCGTCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAA    TTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCA    ]
[-] EMBL CD133007             [                               TCCC GGCAACGCCACGT ACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACG              ]




>consensus_9907#0
CATCGTACACCTCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTC
GCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGC
AACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCA
GTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACG
TACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCA
ATCCACTTCGCTTCAATGTTACGTACGAATTAATCACCATCAGTCAAACCATCACAGATC
CCGGCAACGCCACGTACCAATCCACTTG

consensusID : consensus_9907#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 375
fasta sequence

                              [AAGAGTGAATGATTGAATAGGAAGCAGGAGTGTATGGATGGTGCTTTTGATTGTGTTTGTGTTGCTAATTCTTACTACTGATATTGTTGATAATAATAATGACAGTGACTGATTGTTGGTGTTCGGTATTGTTGTAAGTGTGATTGAATTAGTGTTATGATTGAAATGTAGTGACACTGTTTCGTAGTTGTGTGCTACCGTAGTAGTATTTGTTGTTGTTGTTGTTGTTGTTGATTATGATGATGACGGTGGTGTTGTTATTGTTGTTTCGTTGGTATTGTTTGGTGGTTGTGGCGCATAAGTTGAGTTGATGTTTATGTTGGTGGAAATGCGTGTATCGGAATGAAGGAGTGTGTACATGGTGAGTCAATTGAG]

[+] EMBL CD146122             [AAGAGTGAATGATTGAATAGGAAGCAGGAGTGTATGGATGGTGCTTTTGATTGTGTTTGTGTTGCTAATTCTTACTACTGATATTGTTGATAATAATAATGACAGTGACTGATTGTTGGTGTTCGGTATTGTTGTAAGTGTGATTGAATTAGTGTTATGATTGAAATGTAGTGACACTGTTTCGTAGTTGTGTGCTACCGTAGTAGTATTTGTTGTTGTTGTTGTTGTTGTTGATTATGATGATGACGGTGGTGTTGTTATTGTTGTTTCGTTGGTATTGTTTGGTGGTTGTGGCGCATAAGTTGAGTTGATGTTTATGTTGGTGGAAATGCGTGTATCGGAATGAAGGAGTGTGTACATGGTGAGTCAATTGAG]




>consensus_9907#1
AAGAGTGAATGATTGAATAGGAAGCAGGAGTGTATGGATGGTGCTTTTGATTGTGTTTGT
GTTGCTAATTCTTACTACTGATATTGTTGATAATAATAATGACAGTGACTGATTGTTGGT
GTTCGGTATTGTTGTAAGTGTGATTGAATTAGTGTTATGATTGAAATGTAGTGACACTGT
TTCGTAGTTGTGTGCTACCGTAGTAGTATTTGTTGTTGTTGTTGTTGTTGTTGATTATGA
TGATGACGGTGGTGTTGTTATTGTTGTTTCGTTGGTATTGTTTGGTGGTTGTGGCGCATA
AGTTGAGTTGATGTTTATGTTGGTGGAAATGCGTGTATCGGAATGAAGGAGTGTGTACAT
GGTGAGTCAATTGAG

consensusID : consensus_9907#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 351
fasta sequence

                              [AGATCCCGGCAACGCCACGTACCGATGCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAAGAATATTCTGAGTCTCTGTAGTGTTTCTATGTCATGCTGTGTAGTAGTA]

[-] EMBL CD098349             [AGATCCCGGCAACGCCACGTACCGATGCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAAGAATATTCTGAGTCTCTGTAGTGTTTCTATGTCAT              ]
[-] EMBL CD191360             [                                                                                       CCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAAGAATATTCTGAGTCTCTGTAGTGTTTCTATGTCATGCTGTGTAGTAGTA]




>consensus_9907#2
AGATCCCGGCAACGCCACGTACCGATGCACTTCGCTTCAATGTTACGTACGAATCACTTA
ATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTT
CAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACG
CCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCA
AACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACG
AAGAATATTCTGAGTCTCTGTAGTGTTTCTATGTCATGCTGTGTAGTAGTA

consensusID : consensus_9907#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence

                              [ACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAGCGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAACATGTACACACTCCTTCATTCCGATACACGCGTTTCCACCAACATAAACATCAACT]

[+] EMBL CD187253             [ACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAGCGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAACATGTACACACTCCTTCATTCCGATACACGCGTTTCCACCAACATAAACATCAACT]




>consensus_9907#3
ACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAG
TCAAACCATCACAGATCCCGGCAGCGCCACGTACCAATCCACTTCGCTTCAATGTTACGT
ACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAA
TCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAG
ATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAACATGTACAC
ACTCCTTCATTCCGATACACGCGTTTCCACCAACATAAACATCAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9907#0      CATCGTACACCTCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTC 60
consensus_9907#3      --------------------------------------ACGCCACGTACCAATCCACTTC 22
consensus_9907#2      ---------------------------AGATCCCGGCAACGCCACGTACCGATGCACTTC 33
consensus_9907#1      ------------------AAGAGTGAATGATTGAATAGGAAGCAGGAGTGTATGGATGGT 42
                                                                ** *     **  *    

consensus_9907#0      GCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGC 120
consensus_9907#3      GCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGC 82
consensus_9907#2      GCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGC 93
consensus_9907#1      GCTTTTG-ATTGTGTTTGTGTTGCT-AATTCTTACTACTGA---TATTGTTGATAATAAT 97
                      ****     **  **  *  *  ** ***    *  * * *    **    ***      

consensus_9907#0      AACGCCACGTACCAATCCACTTCGCTTCAATGTTAC-GTACGAATCACTTAATCACCATC 179
consensus_9907#3      AGCGCCACGTACCAATCCACTTCGCTTCAATGTTAC-GTACGAATCACTTAATCACCATC 141
consensus_9907#2      AACGCCACGTACCAATCCACTTCGCTTCAATGTTAC-GTACGAATCACTTAATCACCATC 152
consensus_9907#1      AATGACAGTGACTGATT-GTTGGTGTTCGGTATTGTTGTAAGTGTGATTGAATTAGTGTT 156
                      *  * **   **  **    *    ***  * **   *** *  * * * *** *   * 

consensus_9907#0      AGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTAC 239
consensus_9907#3      AGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTAC 201
consensus_9907#2      AGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTAC 212
consensus_9907#1      AT---GAT--TGAAATGTAGTGACACTGTTTCGTAGTTGTGTGCT--ACCGTAGTAGTAT 209
                      *     *   * * *  *   * **  *   ****    *   **   *   * *  ** 

consensus_9907#0      GTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACC 299
consensus_9907#3      GTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACC 261
consensus_9907#2      GTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACC 272
consensus_9907#1      TTGTTGTTGTTGTTGTTGTTGTTGATTATGATGATGACGGTGGTGTTGTTATTGTTGTTT 269
                       *     *    *  *     *   * *          * *   *               

consensus_9907#0      AATCCACTTCGCTTCAATGTTACGTACGAATTAAT-CACCATCAGTCAAACCATCACAGA 358
consensus_9907#3      AATCCACTTCGCTTCAATGTTACGTACGAACATGTACACACTCCTTCATTCCGATACACG 321
consensus_9907#2      AATCCACTTCGCTTCAATGTTACGTACGAAGAA---TATTCTGAGTC--TCTGTAGTGTT 327
consensus_9907#1      CGTTGGTATTGTTTGGTGGTTGTGGCGCATAAGTTGAGTTGATGTTTATGTTGGTGGAAA 329
                        *     * * **    ***  *    *                *              

consensus_9907#0      TCCCGGCAACGCCACGTACCAATCCACTTG---------------- 388
consensus_9907#3      CGTTTCCACCAACATAAAC--ATCAACT------------------ 347
consensus_9907#2      TCTATGTCATGCTGTGTAGTAGTA---------------------- 351
consensus_9907#1      TGCGTGTATCGGAATGAAGGAGTGTGTACATGGTGAGTCAATTGAG 375
                                       *    *