These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9926#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1377 fasta sequence [AGACGTGGTGGGTAGCAACTTACAATCTTTGGATATTGTTAACGTCGTCACTCCAAATCCTTTAGATAATTAGTGCCTGAGGAGTCAGTGTATTTGATGTTTGATGGANAATAAGCTCTTCGTCTCTGAAATGCCAGTTGATGGTTGTGAAAAATCTTCAAGACCTTCTGCCGACACTGGTGTTATC-CTCA-CGGTCATCATGATCAAGAAAAAAGAG-TCGTAGGGAAATTGCTAATAGCAATGAGCGGCGGCGGATGCAAAGTATCAACGCTGGGTTCGACTCTCTGCGGATCCTATTGCCATCCATATCAGACGGAGAAAAAATGAGCAAGGCGACAATTTTACAACTGACTGCCAAATATATCAACACATTACTCATGCGCGTTAGTTTGCTGGAAAGCGAAGTAGCTGTGTACCGACAATCAGCTGGTTTGCAACTAAATCCAGTCTCGTCAGAGTTGTCTGGTTCATCCGTGACTTCCAGAAAACGCAGATCTGATGATTTAAAGGACCGGCCGGACTGTATTCGGAATCGACGTCGACGAGTTGAGATCGAAGGGATATACGATTCATCTCGCACGAATTACGTCCACTTTTCTCCTGAAAGCACCGATACACACCAGTCATCCCCACTTACATCTTTCAATAGTAGCACATCGATTTGTTCAGCATCTCCTCAGCCTGACAGCACAAGCAGTACTGCTGCACGACTTGAACATTTGGTGATGGCAATTGAGCAGATTGAGGGGGGTGGTGCTCTTAACGTGTCTCCACAACCTGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCACTCACCTCCGGAAACATACTGGCATAGTCCACAAGAAAATTATCACGGATATGCCTATGTTGATGCCCAAACATCTAATCAAAAGTCTAACAATTTGTTTGCTGATTCCCTCCTGCTTACTCCAGTAT-CGGAAATTAATCCCTCTTTAAATACTAGTGACAATGTCCAGACTCACAATACTGAGGATTACCCTATTGTAGCAAAACTCCTTAACCGCCCTATTCCTCACAAATACTTCCACAGGCCTCAAGTTGTGGTTAATAGTTCCCACTGATTTCCTATTTCTTTTAGTTTCGCATTTTCAACTCCTAACTTTGTCTGGATTAATCCGCATGAACTCTGCTTGCGGAATTTTTCTTAGCACGGTGTATATACGTATATTTGGGGTTTATCATGTTATTTCCCTGGAACCTAACTATATATTTTGTGATCTTTTATATCTTTAGTTTTTCGTTTGTTTTGGGTGTGGTTTACTAAGTTTTAAGCCGTCTAAGGTTCTTAATGTCTAGCACTTTTTGTACTTTGTAAAATAATGGTTTGTTTTCTGTTGTGTAAAACTGATC] [-] EMBL CD183350 [AGACGTGGTGGGTAGCAACTTACAATCTTTGGATATTGTTAACGTCGTCACTCCAAATCCTTTAGATAATTAGTGCCTGAGGAGTCAGTGTATTTGATGTTTGATGGANAATAAGCTCTTCGTCTCTGAAATGCCAGTTGATGGTTGTGAAAAATCTTCAAGACCTTCTGCCGACACTGGTGTTATCGCTCA CGGTCATCATGATCAAGAAAAAAGAGTTCGTAGGGAAATTGCTAATAGCAATGAGCGGCGGCGGATGCAAAGTATCAACGCTGGGTTCGACTCTCTGCGGATCCTATTGCCATCCATATCAGACGGAGAAAAAATGAGCAAGGCGACAATTTTACAACTGACTGCCAAATATATCAACACATTACTCATGCGCGTTAGTTTGCTGGAAAGCGAAGTAGCTGTGTACCGACAATCAGCTGGTTTGCAACTAAATCCAGTCTCGTCAGAGTTGTCTGGTTCATCCGTGACTTCCGGAAAACGCAGATCTGATGATTTA ] [+] EMBL CD061842 [ C CCCATCGGGAATCATGATCAAGAAAAAAGAG TCGTAGGGAAATTGCTAATAGCAATGAGCGACGGCGGATGCAAAGTATCAACGCTGGGTTCGACTCTCTGCGGATCCTATTGCCATCCATATCAGACGGAGAAAAAATGAGCAAGGCGACAATTTTACAACTGACTGCCAAATATATCAACACATTACTCATGCGCGTTAGTTTGCTGGAAAGCGAAGTAGCTGTGTACCGACAATCAGCTGGTTTGCAACTAAATCCAGTCTCGTCAGAGTTGTCTGGTTCATCCGTGACTTCCAGAAAACGCAGATCTGATGATTTAAAGGACCGGCCGGACTGTATTCGGAATCGACGTCGACGAGTTGAGATCGAAGGGATATACGATTCATCTCGCACGAATTACGTCCACTTTTCTCCTGAAAGCACCGATACACACCAGTCATCCCCACTTACATCTTTCAATAGTAGCACATCGATTTGTTCAGCATCTCCTCA ] [+] EMBL CD200626 [ CTGCGGATCCTATTGCCATCCATATCAGACGGAGAAAAAATGAGCAAGGCGACAATTTTACAACTGACTGCCAAATATATCAACACATTACTCATGCGCGTTAGTTTGCTGGAAAGCGAAGTAGCTGTGTACCGACAATCAGCTGGTTTGCAACTAAATCCAGTCTCGTCAGAGTTGTCTGGTTCATCCGTGACTTCCAGAAAACGCAGATCTGATGATTTAAAGGACCGGCCGGACTGTATTCGGAATCGACGTCGACGAGTTGAGATCGAAGGGATATACGATTCATCTCGCACGAATTACGTCCACTTTTCTCCTGAAAGCACCGATACACACCAGTCATCCCCACTTACATCTTTCAATAGTAGCACATCGATTTGTTCAGCATCTCCTCAGCCTGACAGCACAAGCAGTACTGCTGCACGACTTGAACATTTGGTGATGGCAATTGAGCAGATTGAGGGGGGTGGTGCTCTTAACGTGTCTCCACAACCTGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCACTCACCTCCGGAAACATACTGGCATAGTCCACAAGAAAATTATCACGGATATGCCTAT ] [-] EMBL CD095974 [ TATCAACACATTACTCATGCGCGTTAGTTTGCTGGAAAGCGAAGTAGCTGTGTACCGACAATCAGCTGGTTNGCAACTAAATCCAGTCTCGTCAGAGTTGTCTGGTTCATCCGTGACTTCCAGAAAACGCAGATCTGATGATTTAA GACCGGCCGGACTGTATTCGGAATCGACGTCGACGAGTTGAGATCGAAGGGATATACGATTCATCTCGCACGAATTACGTCCACTTTTCTCCTGAAAGCACCGATACACACCAGTCATCCCCACTTACATCTTTCAATAGTAGCACATCGATTTGTTCAGCATCTCCTCAGCCTGACAGCACAAGCAGTACTGCTGCACGACTTGAACATTTGGTGATGGCAATTGAGCAGATTGAGGGGGGTGGTGCTCTTAACGTGTCTCCACAACCTGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCACTCACCTCCGGAAACATACTGGCATAGTCCACAAGAAAATTATCACGGATATGCCTATGTTGATGCCCAAACATCTAATCAAAAGTCTAACAATTTGT ] [+] EMBL CD127879 [ aagtcAAATGGTAGGTCTGATGATTT TTTGACCGGCCGGACTGTATTCGGACTCGACGTCGACGAGTTGAGATCGAAGGGATATACGATTCATCTCGCACGAATTACGTCCACTTTTCTCCTGAGAGCACCGATACACACCAGTCATCCCCACTTACATCTTTCAATAGTAGCACATCGATTTGTTCAGCATCTCCTCAGCCTGACAGCACAAGCAGTACTGCTGCACGACTTGAACATTTGGTGATGGCAATTGAGCAGATTGAGGGGGGTGGTGCTCTTAACGTGTCTCCACAACCTGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCACTCACCTCCGGAAACATACTGGCATAGTCCACAAGAAAATTATCACGGATATGCCTATGTTGATGCCCAAACATCTAATCAAAAGTCTAACAATTTGTTTGCTGATTCCCTCCTGCTTACTCCAGTAT CGGAAATTAATCCCTCTTTAAATACTAGTGACAATGTCCAGACTCACAATACTGAGGATTACCCTATTGTAGCA ] [+] EMBL CD060577 [ CGACGTCGACGAGTTGAGATCGAAGGGATATACGATTCATCTCGCACGAGTTACGTCCACTTTTCTCCTGAAAGCACCGATACACACCAGTCATCCCCACTTACATCTTTCAATAGTAGCACATCGATTTGTTCAGCATCTCCTCAGCCTGACAGCACAAGCAGTACTGCTGCACGACTTGAACATTTGGTGATGGCAATTGAGCAGATTGAGGGGGGTGGTGCTCTTAACGTGTCTCCACAACCTGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCACTCACCTCCGGAAACATACTGGCATAGCCCACAAGAAAATTATCACGGATATGCCTATGTTGATGCCCAAACATCTAATCAAAAGTCTAACAATTTGTTTGCTGATTCCCTCCTGCTTACTCCAGTAT CGGAAATTAATCCCTCTTTAAATACTAGTGACAATGTCCAGACTCACAATACTGAGGATTA CCTATTGTAGCA ] [-] EMBL CD130899 [ AGTTGAGATCGAAGGGATATACGATTCATCTCGCACGAATTACGTCCACTTTTCTCCTGAAAGCACCGATACACACCAGTCATCCCCACTTACATCTCTCAATAGTAGCACATCGATTTGTTCAGCATCTCCTCAGCCTGACAGCACAAGCAGTACTGCTGCACGACTTGAACATTTGGTGATGGCAATTGAGCAGATTGAGGGGGGTGGTGCTCTTAACGTGTCTCCACAACCTGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCGCTCACCTCCGGAAACATACTGGCATAGTCCACAAGAAAATTATCACGGATATGCCTATGTTGATGCCCAAACATCTAATCAAAAGTCTAACAAT ] [+] EMBL CD133671 [ ATTCATCTCGCACGAATTACGTCCACTTTTCTCCTGAAAGCACCGATACACACCAGTCATCCCCACTTACATCTTTCAATAGTAGCACATCGATTTGTTCAGCATCTCCTCAGCCTGACAGCACAAGCAGTACTGCTGCACGACTTGAACATTTGGTGAAGGCAATTGAGCAGATTGAGGGGGGTGGTGCTCTTAACGTGTCTCCACAACCCGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCACTCACCTCCGGAAACATACTGGCATAGTCCACAAGAAAA TATCACGGATATGCCTATGTTGGTGCCCAAACATCTAATGAAAAGTCTAACAATTTGTTTGCTGGTTCCCTGCTGGCTACTCCAGAATGCGGAAA TAATCCCg ] [-] EMBL CD128114 [ ATCCCCACTTACATCTTTCAATAGTAGCACATCGATTTGTTCAGCATCTCCTCAGCCTGACAGCACAAGCAGTACTGCTGCACGACTTGAACATTTGGTGATGGCAATTGAGCAGATTGAGGGGGGTGGTGCTCTTAACGTGTCTCCACAACCTGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCACTCACCTCCGGAAACATACTGGCATAGTCCACAAGAAAATTATCACGGATATGCCTATGTTGATGCCCAAACATCTAATCAAAAGTCTAACAATTTGTTTGCTGATTCCCTCCTGCTTACTCCAGTAT CGGAAATTAATCCCTCTTTAAATACTAGTGACAATGTCCAGACTCACAATACTGAGGATTACCCTATTGTAGCAA ] [+] EMBL BG932354 [ aaGGTGCTCTTAACGTGTCTCCACAACCTGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCACTCACCTCCGGAAACATACTGGCATAGTCCACAAGAAAATTATCACGGATATGCCTATGTTGATGCCCAAACATCTAATCAAAAGTCTAACAATTTGTTTGCTGATTCCCTCCTGCTTACTCCAGTAT CGGAAATTAATCCCTCTTTAAATACTAGTGACAATGTCCAGACTCACAATACTGAGGATTACCCTATTGTAGCAAAACTCCTTAACCGCCCTATTCCTCACAAATACT ] [-] EMBL CD202825 [ CTAGTGACAATGTCCAGACTCACAATACTGAGGATTACCCTATTGTAGCAAAACTCCTTAACCGCCCTATTCCTCACAAATACCTCCACAGGCCTCAAGTTGTGGTTAATAGTTCCCACTGATTTCCTATTTCTTTTAGTTTCGCATTTTCAACTCCTAACTTTGTCTGGATTAATCCGCATGAACTCTGCTTGCGGAATTTTTCTTAGCACGGTGTATATACGTATATTTGGGGTTTATCATGTTATTTCCCTGGAACCTAACTATATATTTTGTGATCTTTTATATCTTTAGTTTTTCGTTTGTTTTGGGTGTGGTTTACTAAGTTTTAAGCCGTCTAAGGTTCTTAATGTCTAGCACTTTTTGTACTTTGTAAAATAATGGTTTGTTTTCTGTTGTGTAAAACTGATC] consensusID : consensus_9926#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [ATATTGTTAACGTCGTCACTCCAAATCCTCTAGATAATTAGTGCCTGAGGAGTCAGTGTATNTGATGTNTGATGGAAAATAAGCTCTTCGTCTCTGAAATGCCAGTTGATGGTNNNNAAAAATCTTCAAGGTAAGCTTCCTCACGTGACGCCATATTGCTTTTTACTTATGGTCTAGAATTTTTGTATACAGGCTCCCTAATACATTTTTTACTTGTTTTGATATGCTTGTTGATTATATTAAGTGATTGTATGTTAAGTCGATTGTGATTTTTGTCGAAGTCTTAAAATTCTTTGGCTGTCTATTCCTTATCTTATACACAGACCTTCTGCCGACACTGGTGTTATCGCTCACGGTCATCATGATCAAGAAAAAAGAGTTCGTAGGGAAATTGCTAATAGCAATGAGCGACGGCGGATGCAAAGTATCAACGCTGGGTTCGACTCTCTGCGGATCCTATTG] [-] EMBL CD088583 [ATATTGTTAACGTCGTCACTCCAAATCCTCTAGATAATTAGTGCCTGAGGAGTCAGTGTATNTGATGTNTGATGGAAAATAAGCTCTTCGTCTCTGAAATGCCAGTTGATGGTNNNNAAAAATCTTCAAGGTAAGCTTCCTCACGTGACGCCATATTGCTTTTTACTTATGGTCTAGAATTTTTGTATACAGGCTCCCTAATACATTTTTTACTTGTTTTGATATGCTTGTTGATTATATTAAGTGATTGTATGTTAAGTCGATTGTGATTTTTGTCGAAGTCTTAAAATTCTTTGGCTGTCTATTCCTTATCTTATACACAGACCTTCTGCCGACACTGGTGTTATCGCTCACGGTCATCATGATCAAGAAAAAAGAGTTCGTAGGGAAATTGCTAATAGCAATGAGCGACGGCGGATGCAAAGTATCAACGCTGGGTTCGACTCTCTGCGGATCCTATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9926#0 AGACGTGGTGGGTAGCAACTTACAATCTTTGGATATTGTTAACGTCGTCACTCCAAATCC 60 consensus_9926#1 --------------------------------ATATTGTTAACGTCGTCACTCCAAATCC 28 **************************** consensus_9926#0 TTTAGATAATTAGTGCCTGAGGAGTCAGTGTATTTGATGTTTGATGGANAATAAGCTCTT 120 consensus_9926#1 TCTAGATAATTAGTGCCTGAGGAGTCAGTGTATNTGATGTNTGATGGAAAATAAGCTCTT 88 * ******************************* ****** ******* *********** consensus_9926#0 CGTCTCTGAAATGCCAGTTGATGGTTGTGAAAAATCTTCAAGACCTTCTGCCGACACTGG 180 consensus_9926#1 CGTCTCTGAAATGCCAGTTGATGGTNNNNAAAAATCTTCAAGGTAAGCTTCCTCACGTGA 148 ************************* ************* ** ** ** consensus_9926#0 TGTTATCCTCACGGTCA-TCATGATCAAGAAAAAAGAGTCGTAGGGAAATTGCTAATAGC 239 consensus_9926#1 CGCCATATTGCTTTTTACTTATGGTCTAGAATTTTTGTATACAGGCTCCCTAATACATTT 208 * ** * * * * *** ** **** *** * ** consensus_9926#0 AATGAGCGGCGGCGGATGCAAAGTATCAACGCTGGGTTCGACTCTCTGCGGATCCTATTG 299 consensus_9926#1 TTTACTTGTTTTGATATGCTTGTTGATTATATTAAGT--GATTGTATGTTAAGTCGATTG 266 * * **** * * * ** ** * * ** * * **** consensus_9926#0 CCATCCATATCAGACGGAGAAAAAATGAGCAAGGCGACAATTTTACAACTGACTGCCAAA 359 consensus_9926#1 TGATTTTTGTCGAA--GTCTTAAAATTCTTTGGCTGTCTATTCCTTATCTTATACACAGA 324 ** * ** * * ***** * * * *** * ** * ** * consensus_9926#0 ---TATATCAACACATTACTCATGCGCGTTAGTTTGCTGGAAAGCGAAGTAGCTGTGTAC 416 consensus_9926#1 CCTTCTGCCGACACTGGTGTTATCGCTCACGGTCATCATGATCAAGAAAAAAGAGTTCGT 384 * * * **** * ** ** * ** *** * ** consensus_9926#0 CGACAATCAGCTGGTTTGCAACTAAATCCAGTCTCGTCAGAGTTGTCTGGTTCATCCGTG 476 consensus_9926#1 AGGGAAATTGCTAATA-GCAATGAGCGACGGCGGATGCAAAGTA-------TCAACGCTG 436 * ** *** * **** * * * ** *** *** * ** consensus_9926#0 ACTTCCAGAAAACGCAGATCTGATGATTTAAAGGACCGGCCGGACTGTATTCGGAATCGA 536 consensus_9926#1 GGTTCGACTCTCTGCGGATCCTATTG---------------------------------- 462 *** * ** **** ** consensus_9926#0 CGTCGACGAGTTGAGATCGAAGGGATATACGATTCATCTCGCACGAATTACGTCCACTTT 596 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 TCTCCTGAAAGCACCGATACACACCAGTCATCCCCACTTACATCTTTCAATAGTAGCACA 656 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 TCGATTTGTTCAGCATCTCCTCAGCCTGACAGCACAAGCAGTACTGCTGCACGACTTGAA 716 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 CATTTGGTGATGGCAATTGAGCAGATTGAGGGGGGTGGTGCTCTTAACGTGTCTCCACAA 776 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 CCTGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCACTCACCTCCGGAAACATACTGG 836 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 CATAGTCCACAAGAAAATTATCACGGATATGCCTATGTTGATGCCCAAACATCTAATCAA 896 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 AAGTCTAACAATTTGTTTGCTGATTCCCTCCTGCTTACTCCAGTATCGGAAATTAATCCC 956 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 TCTTTAAATACTAGTGACAATGTCCAGACTCACAATACTGAGGATTACCCTATTGTAGCA 1016 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 AAACTCCTTAACCGCCCTATTCCTCACAAATACTTCCACAGGCCTCAAGTTGTGGTTAAT 1076 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 AGTTCCCACTGATTTCCTATTTCTTTTAGTTTCGCATTTTCAACTCCTAACTTTGTCTGG 1136 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 ATTAATCCGCATGAACTCTGCTTGCGGAATTTTTCTTAGCACGGTGTATATACGTATATT 1196 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 TGGGGTTTATCATGTTATTTCCCTGGAACCTAACTATATATTTTGTGATCTTTTATATCT 1256 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 TTAGTTTTTCGTTTGTTTTGGGTGTGGTTTACTAAGTTTTAAGCCGTCTAAGGTTCTTAA 1316 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 TGTCTAGCACTTTTTGTACTTTGTAAAATAATGGTTTGTTTTCTGTTGTGTAAAACTGAT 1376 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 C 1377 consensus_9926#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||