These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1238 fasta sequence [CCATATAAATCAGAATTTTCAAATTCTCGACGTAATTGACCATTTTCTTGTTCTAAATCTTTTATACGTAATAGCATGCTTGCACGATTTGTAATCAAAGCATTCAGTTCAGATGAGAACTGAAAATTTTGGCATGAAAGTTCATCAATCCGTCCAATTAAGTCATTTGTAACTATTTTAAGTGCATTTTTTGTTTGAACTAATTCTTGATTCTCTTTTATTAAATTTTGTATTTCTCTCCGCACGCCAGCATAATCGGTAAGATCACCATCTACCTCCAGTTCAACAGGTTCAGCAAACTCGTTACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGACTTTTTATATCGTGTCCATCGTCTT-CCGGTAAATCACCTTGCGATAATTCATCAAAACATGGTTCTGAAAGCGATGAATTATTG-AAAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTTTCCATGATAATCCTCATAATTCTCTGTCGTTCTGTCTCTAAAGTTTCTGAATTCAGCATATTGCCTAGTCGGTTTAACTGATCAACTCCTGTACTGTGGTTAGATGTTTGAGCAGCCAATCCAACTTCAAAGCAAGTATTATCACTGGTATAGGGACAGTCAGGAAGACAATGATTGTCTAATTTGCTTTTAATAAACATTGACCTAACACGTTCTACATATTCAAGGTACACACGCAGAAGATTGGTGTATAAATCATGTAGACGCTGATACTCTCCTTTCATTTCCGCCTCTTGTTCTTCAAACCTCGAAATTTGATCATTCAAGCTTTTCACTTTGTTTTCAAG-TATACGAA-TATTGGCATCGTAAGATGCAGCTTTTTCCTCGTGCTGTCTACGTTCCTCTTCCAGATCATCTTCCAAGCGGAATAACTTATTCTCAGCAACCTTCCTTAGTTTCTTCTCTTTTTCATATTCACCTGAAAGTAGTCTATGGTCATCACTTAGCACAAGTGACTTTAGATGGAGGTCAGAGTTTTCAGAGTGCAAGCTATCGAGGTTCTCTAGTGCACGGATGACCAACGGCATTAAATTGTGAAGGAAGCCATTCCCATATAATTTGATCAAAGACTCGAACTCCTTATATATATCATTTGCCAAGTCCTGAACGCTTTGAGATATTGGCTGAGACCCGTCATCAGTGCTGCTAATCGCGTCCTCGCGATCATCTGATGATCGAAGACGTCGATCAGCTTGGATATA] [+] EMBL CD187523 [CCATATAAATCAGAATTTTCAAATTCTCGACGTAATTGACCATTTTCTTGTTCTAAATCTTTTATACGTAATAGCATGCTTGCACGATTTGTAATCAAAGCATTCAGTTCAGATGAGAACTGAAAATTTTGGCATGAAAGTTCATCAATCCGTCCAATTAAGTCATTTGTAACTATTTTAAGTGCATTTTTTGTTTGAACTAATTCTTGATTCTCTTTTATTAAATTTTGTATTTCTCTCCGCACGCCAGCATAATCGGTAAGATCACCATCTACCTCCAGTTCAACAGGTTCAGCAAACTCGTTACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGACTTTTTATATCGTGT ] [-] EMBL CD167776 [ ATTTTAAGTGCATTTTTTGTTTGAACTAATTCTTGATTCTCTTTTATTAAATTTTGTATTTCTCTCCGCACGCCAGCATAATCGGTAAGATCACCATCTACCTCCAGTTCAACAGGTTCAGCAAACTCGTTACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGATTTTTTATATCGTGTCCATCGTCTT CCGGTAAATCACCTTGCGATAATTCATCAAAACATGGTTCTGAAAGCGATGAATTATTG AAAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTTTCCATGATAATCCTCATAATTCTCTGTCGTTCTGTCTCTAAAGTTTCTGAATTCAGCATATTGCCTAGTCGGTTTAACTGATCAACCCCTGTACTGTGGTTAGATGTTTGAGCAGCCAATCCAACTTCAAAGCAAGTATTATCACTGGTATAGGGACAGTCAGGAAGACAA ] [-] EMBL CD163759 [ AATCGGTAAGATCACCATCTACCTCCAGTTCAACAGGTTCAGCAAACTCGTTACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGACTTTTTATATCGTGTCCATCGTCTT CCGGTAAATCACCTTGCGATAATTCATCAAGACATGGTTC ] [-] EMBL CD188115 [ TCGGTAAGATCACCATCTACCTNCAGTTCAACAGGTTCAGCAAACTCGTTACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGACTTTTTATATCGTGTCCATCGTCTTCCCGGTAAATCACCTTGCGATAATTCATCAANACATGGTTCTGAAAGCGATGAATTATTGAAAAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTTTCCATGATAATCCTCATAATTCTCTGTCGTTCTGTCTCTAAAGTTTCTGAATTCAGCATATTGCCTAGTCGGTTTAACTGATCAACTCCTGTACTGTGGTTAGATGTTTGAGCAGCCAATCCAACTTCAAAGCAAGTATTATCACCGGT ] [+] EMBL CD151667 [ TAAGATCACCATCTACCTCCAGTTCAACAGGTTCAGCAAACTCGTTACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGACTTTTTATATCGTGTCCATCGTCTT CCGGTAAATCACCTTGCGATAATTCATCAAAACATGGTTCTGAAAGCGATGAATTATTG AAAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTTTCCATGATAATCCTCATAATTCTCTGTCGTTCTGTCT TTTCTGAATTCAGCATATTGCCTAGTCGGTTTAACTGATCAACTCCTGTACTGTGGTTAGATGCTTGAGCAGCCAATCCAACTTCAAAGCAAGTATTATCACTGGTATAGGGACAGTCAGGAAGACAATGATTGTCTAATTTGCTTTTAATAAACATTGACCTAACGCGTTCTACATATTCAAGGTACACACGCAGAAGATTGGTGTATAAATCATGTAGACGCTGATACTCTCCTTTCATTTCCGCCTCTTGTTCTTCA ] [+] EMBL CD151686 [ TAAGATCACCATCTACCTCCAGTTCAACAGGTTCAGCAAACTCGTTACCTAAGGGCTCACCAGACTGCGGTTGTGGTGTAGTCCATGAGCCATCATGACTTTTTATATCGTGTCCCTCGTCTT CCGGTGAATCACCTTGCGATAATTCATCAACACATGGTTCTGACCGCGATGAATTATTG AAAATTCTCCCGCCTCTATAGAGCTCAGGCGTTGTTTCCATGATAATCCTCATAATTCTCTGTCGTTCTGTCT TTTCTGAATTCCGCCTATTGCCTAGT ] [-] EMBL CD122554 [ CGATAATTCATCAAAACATGGTTCTGAAAGCGATGGATTATTG AAAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTTTCCATGATAATCCTCATAATTCTGGGGGGTTCTGTCTCTAAAGTTTCTGAATTCAGCATATTGCCTAGTCGGTTTAACTGATCCCCTCCTGTACTGTGGTTAGATGTTTGAGCAAAAAATCCAACTTCAAAGCAAGTATTATCACTGGTATAGGGACGGTCAGGAAGACAATGATTGTCTAATTTGCTTTTAATAA ] [+] EMBL CD068672 [ GATGAATTA TG AAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTTTCCATGATAATCCTCAT ATTCTCTGTCGTTCTGTCTCTAAAGTTTCTGAATTCAGCATATTGCCTAGTCGGTTTAACTGATCAACTCCTGTACTGTGGTTAGATGTTTGAGCAGCCAATCCAACTTCAAAGCAAGTATTATCACTGGTATAGGGACAGTCAGGAAGACAATGATTGTCTAATTTGCTTTTAATAAACATTGACCTAACACGTTCTACATATTCAAGGTACACACGCAGAAGATTGGTGTATAAATCATGTAGACGCTGATACTCTCCTTTCATTTCCGCCTCTTGTTCTTCAAACCTCGAAATTTGATCATTCAAGCTTTTCACTTTGTTTTCAAG TATACGAA TATTGGCATCGTAAGAT ] [+] EMBL CD137249 [ CGTTCTGTCTCTAAAGTTTCTGAATTCAGCATATTGCCTAGTCGGTTTAACTGATCAACTCCTGTACTGTGGTTAGATGTTTGAGCAGCCAATCCAACTTCAAAGCAAGTATTATCACTGGTATAGGGACAGTCAGGAAGACAATGATTGTCTAATTTGCTTTTAATAAACATTGACCTAACACGTTCTACATATTCAAGGTACACACGCAGAAGATTGGTGTATAAATCATGTAGACGCTGATACTCTCCTTTCATTTCCGCCTCTTGTTCTTCAAACCTCGAAATTTGATCATTCAAGCTTTTCACTTTGTTTTCAAG TATACGAA TATTGGCATCGTAAGATGCAGCTTTTTCCTCGTGCTGTCTACGTTCCTCTTCCAGATCATCTTCCAAGCGGAATAACTTATTCTCAGCAACCTTCCTTAGTTTCTTCTCTTTTTCATATTCACCTGAAA ] [-] EMBL CD098044 [ ACGTTCTACATATTCAAGGTACACACGCAGAAGATTGGTGTATAAATCATGTAGACGCTGATACTCTCCTTTCATTTCCGCCTCTTGTTCCTCAAACCTCGAAATTTGATCATTCAAGCTTTTCACTTTGTTTTCAAGTTATACGAATTATTGGCATCGTAAGATG ] [+] EMBL CD161252 [ CTCTTCCAGATCATCTTCCAAGCGGAATAACTTATTCTCAGCAACCTTCCTTAGTTTCTTCTCTTTTTCATATTCACCTGAAAGTAGTCTATGGTCATCACTTAGCACAAGTGACTTTAGATGGAGGTCAGAGTTTTCAGAGTGCAAGCTATCGAGGTTCTCTAGTGCACGGATGACCAACGGCATTAAATTGTGAAGGAAGCCATTCCCATATAATTTGATCAAAGACTCGAACTCCTTATATATATCATTTGCCAAGTCCTGAACGCTTTGAGATATTGGCTGAGACCCGTCATCAGTGCTGCTAATCGCGTCCTCGCGATCATCTGATGATCGAAGACGTCGATCAGCTTGGATATA] consensusID : consensus_9933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [ATTGGGAACTATTTTAAGTGCATTTCTTGGTTGAAACTAATTCCGGATTCTCTGTTATGAAATTTAGTATTTCTCTCCGCACGCCAGCAAACATCGTAACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGACTTTTAATATCGTGTCACATCGTCTTCCGGTAAATCACCTGGCGATAATTCACTCAAAACATGGTTCTGAAAGCGATGAATTAGAGAAAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTTCCCATGATAATCCTCATAATTCTCTGTCGTTCTGTCTTTAAAGTTTCTGAATTCAGCATATTGCATAGTCGGTTTAACTGATCAACTCCTGTACTG] [-] EMBL CD098266 [ATTGGGAACTATTTTAAGTGCATTTCTTGGTTGAAACTAATTCCGGATTCTCTGTTATGAAATTTAGTATTTCTCTCCGCACGCCAGCAAACATCGTAACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGACTTTTAATATCGTGTCACATCGTCTTCCGGTAAATCACCTGGCGATAATTCACTCAAAACATGGTTCTGAAAGCGATGAATTAGAGAAAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTTCCCATGATAATCCTCATAATTCTCTGTCGTTCTGTCTTTAAAGTTTCTGAATTCAGCATATTGCATAGTCGGTTTAACTGATCAACTCCTGTACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9933#0 CCATATAAATCAGAATTTTCAAATTCTCGACGTAATTGACCATTTTCTTGTTCTAAATCT 60 consensus_9933#1 ------------------------------------------------------------ consensus_9933#0 TTTATACGTAATAGCATGCTTGCACGATTTGTAATCAAAGCATTCAGTTCAGATGAGAAC 120 consensus_9933#1 ------------------------------------------------------------ consensus_9933#0 TGAAAATTTTGGCATGAAAGTTCATCAATCCGTCCAATTAAGTCATTTGTAACTATTTTA 180 consensus_9933#1 --------------------------------------------ATTGGGAACTATTTTA 16 *** * ********** consensus_9933#0 AGTGCATTTTTTGTTTGAA-CTAATTCTTGATTCTCTTTTATTAAATTTTGTATTTCTCT 239 consensus_9933#1 AGTGCATTTCTTGGTTGAAACTAATTCCGGATTCTCTGTTATGAAATTTAGTATTTCTCT 76 ********* *** ***** ******* ******** **** ****** ********** consensus_9933#0 CCGCACGCCAGCATAATCGGTAAGATCACCATCTACCTCCAGTTCAACAGGTTCAGCAAA 299 consensus_9933#1 CCGCACGCCAGCA--------------------------------AACA----------- 93 ************* **** consensus_9933#0 CTCGTTACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGACT 359 consensus_9933#1 -TCGTAACCTAAGGGCTCACCAGACTGCGGTTGTGGAGTAGTACATGAGCCATCATGACT 152 **** ****************************************************** consensus_9933#0 TTTTATATCGTGTC-CATCGTCTTCCGGTAAATCACCTTGCGATAATTCA-TCAAAACAT 417 consensus_9933#1 TTTAATATCGTGTCACATCGTCTTCCGGTAAATCACCTGGCGATAATTCACTCAAAACAT 212 *** ********** *********************** *********** ********* consensus_9933#0 GGTTCTGAAAGCGATGAATTATTGAAAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTT 477 consensus_9933#1 GGTTCTGAAAGCGATGAATTAGAGAAAATTCTCCCGCCACTATAGAGCTCAGGCGTTGTT 272 ********************* ************************************* consensus_9933#0 TCCATGATAATCCTCATAATTCTCTGTCGTTCTGTCTCTAAAGTTTCTGAATTCAGCATA 537 consensus_9933#1 CCCATGATAATCCTCATAATTCTCTGTCGTTCTGTCTTTAAAGTTTCTGAATTCAGCATA 332 ************************************ ********************** consensus_9933#0 TTGCCTAGTCGGTTTAACTGATCAACTCCTGTACTGTGGTTAGATGTTTGAGCAGCCAAT 597 consensus_9933#1 TTGCATAGTCGGTTTAACTGATCAACTCCTGTACTG------------------------ 368 **** ******************************* consensus_9933#0 CCAACTTCAAAGCAAGTATTATCACTGGTATAGGGACAGTCAGGAAGACAATGATTGTCT 657 consensus_9933#1 ------------------------------------------------------------ consensus_9933#0 AATTTGCTTTTAATAAACATTGACCTAACACGTTCTACATATTCAAGGTACACACGCAGA 717 consensus_9933#1 ------------------------------------------------------------ consensus_9933#0 AGATTGGTGTATAAATCATGTAGACGCTGATACTCTCCTTTCATTTCCGCCTCTTGTTCT 777 consensus_9933#1 ------------------------------------------------------------ consensus_9933#0 TCAAACCTCGAAATTTGATCATTCAAGCTTTTCACTTTGTTTTCAAGTATACGAATATTG 837 consensus_9933#1 ------------------------------------------------------------ consensus_9933#0 GCATCGTAAGATGCAGCTTTTTCCTCGTGCTGTCTACGTTCCTCTTCCAGATCATCTTCC 897 consensus_9933#1 ------------------------------------------------------------ consensus_9933#0 AAGCGGAATAACTTATTCTCAGCAACCTTCCTTAGTTTCTTCTCTTTTTCATATTCACCT 957 consensus_9933#1 ------------------------------------------------------------ consensus_9933#0 GAAAGTAGTCTATGGTCATCACTTAGCACAAGTGACTTTAGATGGAGGTCAGAGTTTTCA 1017 consensus_9933#1 ------------------------------------------------------------ consensus_9933#0 GAGTGCAAGCTATCGAGGTTCTCTAGTGCACGGATGACCAACGGCATTAAATTGTGAAGG 1077 consensus_9933#1 ------------------------------------------------------------ consensus_9933#0 AAGCCATTCCCATATAATTTGATCAAAGACTCGAACTCCTTATATATATCATTTGCCAAG 1137 consensus_9933#1 ------------------------------------------------------------ consensus_9933#0 TCCTGAACGCTTTGAGATATTGGCTGAGACCCGTCATCAGTGCTGCTAATCGCGTCCTCG 1197 consensus_9933#1 ------------------------------------------------------------ consensus_9933#0 CGATCATCTGATGATCGAAGACGTCGATCAGCTTGGATATA 1238 consensus_9933#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||