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Schistosoma mansoni
cluster # 9938 cluster # 9938       Sequences # 12       consensus # 7


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9938#0 length = 729 sequences # 2  
consensus_9938#1 length = 601 sequences # 1  
consensus_9938#2 length = 494 sequences # 1  
consensus_9938#3 length = 483 sequences # 2  
consensus_9938#4 length = 465 sequences # 1  
consensus_9938#5 length = 442 sequences # 2  
consensus_9938#6 length = 417 sequences # 3  

consensusID : consensus_9938#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 729
fasta sequence
                              [TACTTGTTAGCGTTATTTTATCCATTTTCTGTGGAAGAAATGTATACTGTGTATTCCGATTAGTGAAAGATCATCGTCGAATTACCATACGCTAATTTAGCTAAACTAAAATTTTGCTTTCATTTATTATTCAAGTTAAGAATAGTTGTAACTTTTACTATCTAAGAGAGTCCCACATTTTGTTCACATTTATATAGACCTGACGCTTTCAGTTTTATGCCGTACATATCTGGTTCGTTTGAAAATAAACTTATTAAGATATCTGCCGGTCTATTAAACCCACCATACCTCAAAGAAGGATATTCAATGTCTGAAAAATATGGGACTATTGGTTGGTTTATTGGTCGCCAGCTTATGTATGAAGTGAATAATAACAAGGAAGAAGATAATCATGTGAATTCGCAGTCCTCCTGTTTATCAAAAGAAGCAACAGATTCTGAAGCTCAAATATGTTGCCTGCAGGAACAAGACAGCTTCAAAGACTACAACAAAACGGATTTGAGATCTTTGTCAGCCGATATTAATGGTCTCATGTTATCATTTAAAACATCCGCGAGTGATGGAGATTTGGATGGAAAGAAAGTTGTTTTTCTCATCGTTTGCAAAATGGGTGTGTACTAGATACTCCGCAGATGTCATTCACACAAACTTACAGTCTTCCACTCCAGATCAAATTCAGTGTGAATGAAATTCTGAACACAGTCAAGAATTTTCCATATACACCAATGT]

[+] EMBL BF936609             [TACTTGTTAGCGTTATTTTATCCATTTTCTGTGGAAGAAATGTATACTGTGTATTCCGATTAGTGAAAGATCATCGTCGAATTACCATACGCTAATTTAGCTAAACTAAAATTTTGCTTTCATTTATTATTCAAGTTAAGAATAGTTGTAACTTTTACTATCTAAGAGAGTCCCACATTTTGTTCACATTTATATAGACCTGACGCTTTCAGTTTTATGCCGTACATATCTGGTTCGTTTGAAAATAAACTTATTAAGATATCTGCCGGTCTATTAAACCCACCATACCTCAAAGAAGGATATTCAATGTCTGAAAAATATGGGACTATTGGTTGGTTTATTGGTCGCCAGCTTATGTATGAAGTGAATAATAACAAGGAAGAAGATAATCATGTGAATTCGCAGTCCTCCTGTTTATCAAAAGAAGCAACAGATTCTGAAGCTCAAATATGTTGCCTGCAGGAACAAGACAGCTTCAAAGACTACAACAAAACGGATTTGAGATCTTTGTCAGCCGATATTAATGGTCTCATGTTATCATTTAAAACATCCGCGAGTGATGGAGATTTGGATGGAAAGAAAGTTGTTTTTCTCATCGTTTGCAAAATGGGTGTGTACTAGATACTCCGCAGATGTCATTCACACAAACTTACAGTCTTCCACTCCAGATCAAATTCAGTGTGAATGAAATTCTGAACACAGTCAAGAATTTTCCATATACACCAATGT]
[+] EMBL BF936343             [TACTTGTTAGCGTTATTTTATCCATTTTCTGTGGAAGAAATGTATACTGTGTATTCCGATTAGTGAAAGATCATCGTCGAATTACCATACGCTAATTTAGCTAAACTAAAATTTTGCTTTCATTTATTATTCAAGTTAAGAATAGTTGTAACTTTTACTATCTAAGAGAGTCCCACATTTTGTTCACATTTATATAGACCTGACGCTTTCAGTTTTATGCCGTACATATCTGGTTCGTTTGAAAATAAACTTATTAAGATATCTGCCGGTCTATTAAACCCACCATACCTCAAAGAAGGATATTCAATGTCTGAAAAATATGGGACTATTGGTTGGTTTATTGGTCGCCAGCTTAT                                                                                                                                                                                                                                                                                                                                                                                     ]


>consensus_9938#0 TACTTGTTAGCGTTATTTTATCCATTTTCTGTGGAAGAAATGTATACTGTGTATTCCGAT TAGTGAAAGATCATCGTCGAATTACCATACGCTAATTTAGCTAAACTAAAATTTTGCTTT CATTTATTATTCAAGTTAAGAATAGTTGTAACTTTTACTATCTAAGAGAGTCCCACATTT TGTTCACATTTATATAGACCTGACGCTTTCAGTTTTATGCCGTACATATCTGGTTCGTTT GAAAATAAACTTATTAAGATATCTGCCGGTCTATTAAACCCACCATACCTCAAAGAAGGA TATTCAATGTCTGAAAAATATGGGACTATTGGTTGGTTTATTGGTCGCCAGCTTATGTAT GAAGTGAATAATAACAAGGAAGAAGATAATCATGTGAATTCGCAGTCCTCCTGTTTATCA AAAGAAGCAACAGATTCTGAAGCTCAAATATGTTGCCTGCAGGAACAAGACAGCTTCAAA GACTACAACAAAACGGATTTGAGATCTTTGTCAGCCGATATTAATGGTCTCATGTTATCA TTTAAAACATCCGCGAGTGATGGAGATTTGGATGGAAAGAAAGTTGTTTTTCTCATCGTT TGCAAAATGGGTGTGTACTAGATACTCCGCAGATGTCATTCACACAAACTTACAGTCTTC CACTCCAGATCAAATTCAGTGTGAATGAAATTCTGAACACAGTCAAGAATTTTCCATATA CACCAATGT



consensusID : consensus_9938#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence
                              [TGAAATTCCCTTGAAGAGGAACATTTATTATAGTTTAGGTGCTCAGATAGTATCACAACTCTCATAGAAAAAATGACAGATATGAGGTTCCTGCTTCGGCTTATGAAGACGTGCGAACCAAATATTTTGTCACTCAGAGGTTTATCTTACATTATTTAATACTGACGAGTTGCTTTATTCCCCATAAGATTTGCTTTTTCTGATGTATGACTCCTAAAATAGACAGCCGAAATAATACCAGGTCTTCCTCACGACAAGAGTTGTTTATACTATGGTGAGTTGAAAGTTTCGGTGAAGGTAAGAAGTGGCTAGCAAACCAAAAGTGTGGATTGAGCAAGTATATTATGCCAAAATGACGCACCACTAAAACCACTACATTTTTTAATAGTCAGTCAGTCAGCTACAACGTAGGACCAGGCACATATATACATCGGTCCAAGTTGCCATATTTCGTTAGCACAACAAGATGAACACTGGATTCATAGAAGTAATTAATTTAGTGGTGGTAGTAGTATATAAATTATAGGTTGTATATAAGGATATAGTACAGGAAGGGAGATATGAAGCAATTTTAATCTTACGGTTTAAGGGAAGATAAAGA]

[+] EMBL CD167790             [TGAAATTCCCTTGAAGAGGAACATTTATTATAGTTTAGGTGCTCAGATAGTATCACAACTCTCATAGAAAAAATGACAGATATGAGGTTCCTGCTTCGGCTTATGAAGACGTGCGAACCAAATATTTTGTCACTCAGAGGTTTATCTTACATTATTTAATACTGACGAGTTGCTTTATTCCCCATAAGATTTGCTTTTTCTGATGTATGACTCCTAAAATAGACAGCCGAAATAATACCAGGTCTTCCTCACGACAAGAGTTGTTTATACTATGGTGAGTTGAAAGTTTCGGTGAAGGTAAGAAGTGGCTAGCAAACCAAAAGTGTGGATTGAGCAAGTATATTATGCCAAAATGACGCACCACTAAAACCACTACATTTTTTAATAGTCAGTCAGTCAGCTACAACGTAGGACCAGGCACATATATACATCGGTCCAAGTTGCCATATTTCGTTAGCACAACAAGATGAACACTGGATTCATAGAAGTAATTAATTTAGTGGTGGTAGTAGTATATAAATTATAGGTTGTATATAAGGATATAGTACAGGAAGGGAGATATGAAGCAATTTTAATCTTACGGTTTAAGGGAAGATAAAGA]


>consensus_9938#1 TGAAATTCCCTTGAAGAGGAACATTTATTATAGTTTAGGTGCTCAGATAGTATCACAACT CTCATAGAAAAAATGACAGATATGAGGTTCCTGCTTCGGCTTATGAAGACGTGCGAACCA AATATTTTGTCACTCAGAGGTTTATCTTACATTATTTAATACTGACGAGTTGCTTTATTC CCCATAAGATTTGCTTTTTCTGATGTATGACTCCTAAAATAGACAGCCGAAATAATACCA GGTCTTCCTCACGACAAGAGTTGTTTATACTATGGTGAGTTGAAAGTTTCGGTGAAGGTA AGAAGTGGCTAGCAAACCAAAAGTGTGGATTGAGCAAGTATATTATGCCAAAATGACGCA CCACTAAAACCACTACATTTTTTAATAGTCAGTCAGTCAGCTACAACGTAGGACCAGGCA CATATATACATCGGTCCAAGTTGCCATATTTCGTTAGCACAACAAGATGAACACTGGATT CATAGAAGTAATTAATTTAGTGGTGGTAGTAGTATATAAATTATAGGTTGTATATAAGGA TATAGTACAGGAAGGGAGATATGAAGCAATTTTAATCTTACGGTTTAAGGGAAGATAAAG A



consensusID : consensus_9938#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence
                              [GTGCGGTACCCCAAAAACTTCTGAGCATCACCGTTACACAACTATTATTTACTCTTTTATTACTCGACATAATTAGCGCCACAACCAGTTCGTACAAACACCAAATCACACCAACTCTCGTAACACTCAACAGAACACCATCCTCGTCCAATCAGTCACCACCGTTACACAACTATGATGAACCCCATAAATACTCGACGTAATCAGCGCCACAACCAGTTGGGACAAACACCAAATCACACCAACGCTGGTTACAATCAACAGACTGCATACTCGTGCAAGCAGTCACCACCGTCACACAACTATTATGTACCCTGTTATTACTCGACGTACTTAGCGCCACTACCAGTTGGTACCAACACCACATCACACCAACGCTGTCTTTTATTACTCGACATAATTAGCGCCACAACCAGTTCGTACAGACACCAAATCACACCAACTCTCGTTACACTCAACAGGACACCATACTCCGTCAAGCAGTCACCAACGGT]

[+] EMBL CD128784             [GTGCGGTACCCCAAAAACTTCTGAGCATCACCGTTACACAACTATTATTTACTCTTTTATTACTCGACATAATTAGCGCCACAACCAGTTCGTACAAACACCAAATCACACCAACTCTCGTAACACTCAACAGAACACCATCCTCGTCCAATCAGTCACCACCGTTACACAACTATGATGAACCCCATAAATACTCGACGTAATCAGCGCCACAACCAGTTGGGACAAACACCAAATCACACCAACGCTGGTTACAATCAACAGACTGCATACTCGTGCAAGCAGTCACCACCGTCACACAACTATTATGTACCCTGTTATTACTCGACGTACTTAGCGCCACTACCAGTTGGTACCAACACCACATCACACCAACGCTGTCTTTTATTACTCGACATAATTAGCGCCACAACCAGTTCGTACAGACACCAAATCACACCAACTCTCGTTACACTCAACAGGACACCATACTCCGTCAAGCAGTCACCAACGGT]


>consensus_9938#2 GTGCGGTACCCCAAAAACTTCTGAGCATCACCGTTACACAACTATTATTTACTCTTTTAT TACTCGACATAATTAGCGCCACAACCAGTTCGTACAAACACCAAATCACACCAACTCTCG TAACACTCAACAGAACACCATCCTCGTCCAATCAGTCACCACCGTTACACAACTATGATG AACCCCATAAATACTCGACGTAATCAGCGCCACAACCAGTTGGGACAAACACCAAATCAC ACCAACGCTGGTTACAATCAACAGACTGCATACTCGTGCAAGCAGTCACCACCGTCACAC AACTATTATGTACCCTGTTATTACTCGACGTACTTAGCGCCACTACCAGTTGGTACCAAC ACCACATCACACCAACGCTGTCTTTTATTACTCGACATAATTAGCGCCACAACCAGTTCG TACAGACACCAAATCACACCAACTCTCGTTACACTCAACAGGACACCATACTCCGTCAAG CAGTCACCAACGGT



consensusID : consensus_9938#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 483
fasta sequence
                              [GGCGACTCCACCAAATAATCCTTTGATGTCTGATTCTTTTGCATCAGCCGGAAAACCCCAAACTATGGCAGTCTTGAGCTCTGGTCCGCCTGATAATGCCAGTCTCAGTTTTTTACCGGCATGGAACTTTGGCTGTGCGACAGCGGCCTTTCGGACTTCCAAGGAAGGAAATGTAAGAAATGCTTTTCTTATGTGACATCCTTGATTCACCAGCATCGCCGCCCAACACACCCAACTCAACGTCCACATCACTCTCGTCGCTGCCGACAGGGACTGGACGCTTGGATCCACCTCTTACTGGAGTGACTTTACCGTTGACGNGATGCTTGTTCTTTGATTCCGGAGTAGCACTAGGCTTGGAAGGTGTAATTGTTGAATTATTTAACAACTGCTTTGAACGACCCTAAAAAAATGGAAAAAAAAACGCGTTAATCATAAGAACGACGGAAACACACATAACAACCCATGAGCCCCATCCCACTC]

[+] EMBL CD139533             [GGCGACTCCACCAAATAATCCTTTGATGTCTGATTCTTTTGCATCAGCCGGAAAACCCCAAACTATGGCAGTCTTGAGCTCTGGTCCGCCTGATAATGCCAGTCTCAGTTTTTTACCGGCATGGAACTTTGGCTGTGCGACAGCGGCCTTTCGGACTTCCAAGGAAGGAAATGTAAGAAATGCTTTTCTTATGTGACATCCTTGATTCACCAGCATCGCCGCCCAACACACCCAACTCAACGTCCACATCACTCTCGTCGCTGCCGACAGGGACTGGACGCTTGGATCCACCTCTTACTGGAGTGACTTTACCGTTGACGNGATGCTTG                                                                                                                                                          ]
[-] EMBL CD131131             [                                                               TATGGCAGTCTTGAGCTCTGGTCCGCCTGATAATGCCAGTCTCAGTTTTTNACCGGCATGGAACTTTGGCTGTGCGACAGCGGCCTTTCGGACTTCCAAGGAAGGAAATGTAAGAAATGCTTTTCTTATGTGACATCCTTGATTCACCAGCATCGCCGCCCAACACACCCAACTCAACGTCCACATCACTCTCGTCGCTGCCGACAGGGACTGGACGCTTGGATCCACCTCTTACTGGAGTGACTTTACCGTTGACGGGATGCTTGTTCTTTGATTCCGGAGTAGCACTAGGCTTGGAAGGTGTAATTGTTGAATTATTTAACAACTGCTTTGAACGACCCTAAAAAAATGGAAAAAAAAACGCGTTAATCATAAGAACGACGGAAACACACATAACAACCCATGAGCCCCATCCCACTC]


>consensus_9938#3 GGCGACTCCACCAAATAATCCTTTGATGTCTGATTCTTTTGCATCAGCCGGAAAACCCCA AACTATGGCAGTCTTGAGCTCTGGTCCGCCTGATAATGCCAGTCTCAGTTTTTTACCGGC ATGGAACTTTGGCTGTGCGACAGCGGCCTTTCGGACTTCCAAGGAAGGAAATGTAAGAAA TGCTTTTCTTATGTGACATCCTTGATTCACCAGCATCGCCGCCCAACACACCCAACTCAA CGTCCACATCACTCTCGTCGCTGCCGACAGGGACTGGACGCTTGGATCCACCTCTTACTG GAGTGACTTTACCGTTGACGNGATGCTTGTTCTTTGATTCCGGAGTAGCACTAGGCTTGG AAGGTGTAATTGTTGAATTATTTAACAACTGCTTTGAACGACCCTAAAAAAATGGAAAAA AAAACGCGTTAATCATAAGAACGACGGAAACACACATAACAACCCATGAGCCCCATCCCA CTC



consensusID : consensus_9938#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence
                              [CTATTATTTACTCTTTTATTACTCGACATAATTAGCGCCACAACCAGTTCGTACAAACACCAAATCACACCAACTCTCGTTACACTCAACAGAACACCGTCCTCGTCCAATCAGTCACCACCGTTACACAACTATTATTTACTCTTTTATTACTCGACATAATTAGCGCCACAACCAGTTCGTACAAACACCAAATCACACCAACTCTCGTAACACTCAACAGAACACCATCCTCGTCCAATCAGTCACCACCGTTACACAACTATTATTTACGAATTACAAACAGATTTTCACAACAACAGCAACAGCGGCCTGTTTGAATACCCGGGCTACCTGTTTCTGCCATGTAAATATTTCATCAAGTTATCTGTTTTTTTAGTTGTTTCAACTTATCCTTATGTTTGTTAATTGCATAACCTATACAGGCGCGTTTATGAAACGCTTACGTCCTTTCGAGATTATCCA]

[+] EMBL CD146722             [CTATTATTTACTCTTTTATTACTCGACATAATTAGCGCCACAACCAGTTCGTACAAACACCAAATCACACCAACTCTCGTTACACTCAACAGAACACCGTCCTCGTCCAATCAGTCACCACCGTTACACAACTATTATTTACTCTTTTATTACTCGACATAATTAGCGCCACAACCAGTTCGTACAAACACCAAATCACACCAACTCTCGTAACACTCAACAGAACACCATCCTCGTCCAATCAGTCACCACCGTTACACAACTATTATTTACGAATTACAAACAGATTTTCACAACAACAGCAACAGCGGCCTGTTTGAATACCCGGGCTACCTGTTTCTGCCATGTAAATATTTCATCAAGTTATCTGTTTTTTTAGTTGTTTCAACTTATCCTTATGTTTGTTAATTGCATAACCTATACAGGCGCGTTTATGAAACGCTTACGTCCTTTCGAGATTATCCA]


>consensus_9938#4 CTATTATTTACTCTTTTATTACTCGACATAATTAGCGCCACAACCAGTTCGTACAAACAC CAAATCACACCAACTCTCGTTACACTCAACAGAACACCGTCCTCGTCCAATCAGTCACCA CCGTTACACAACTATTATTTACTCTTTTATTACTCGACATAATTAGCGCCACAACCAGTT CGTACAAACACCAAATCACACCAACTCTCGTAACACTCAACAGAACACCATCCTCGTCCA ATCAGTCACCACCGTTACACAACTATTATTTACGAATTACAAACAGATTTTCACAACAAC AGCAACAGCGGCCTGTTTGAATACCCGGGCTACCTGTTTCTGCCATGTAAATATTTCATC AAGTTATCTGTTTTTTTAGTTGTTTCAACTTATCCTTATGTTTGTTAATTGCATAACCTA TACAGGCGCGTTTATGAAACGCTTACGTCCTTTCGAGATTATCCA



consensusID : consensus_9938#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 442
fasta sequence
                              [GTTTGTCAGTGGCTACTCTGGGAATGCATCTCCTTACGTTGCTTCATTGAGTTATGGATCAGACCTATAGATATCAGGTTGTGGGCGTGGCCCCCTGGGAAACCACCTACTTCGCTTTGGACATCCGGATAGTATCCCAGCCTTCAAATAAATCTAATGATTTATGTAGCTCATATCTGTTTCATGCCCACTTGAACCAATATTTATGTATTTACATAGATCAATAAATAAATATCATTACATACTCTAGTTGATCATCTTGGAAAATAATTTAATGACAATGTTTAAATGCAATTCGTCAGTGTTACTGTAAGGATGGCTCGTTGACAAACTCAAGGAAGCCTCAAGAAACCCAGAAAGAGCCGAAGACATTCCATCCAATCATCACTAGAGGAACGTTCTATAATGTCAACATGTAGCTTCCCTATTGGATAAATACATG]

[+] EMBL CD155497             [GTTTGTCAGTGGCTACTCTGGGAATGCATCTCCTTACGTTGCTTCATTGAGTTATGGATCAGACCTATAGATATCAGGTTGTGGGCGTGGCCCCCTGGGAAACCACCTACTTCGCTTTGGACATCCGGATAGTATCCCAGCCTTCAAATAAATCTAATGATTTATGTAGCTCATATCTGTTTCATGCCCACTTGAACCAATATTTATGTATTTACATAGATCAATAAATAAATATCATTACATACTCTAGTTGATCATCTTGGAAAATAATTTAATGACAATGTTTAAATGCAATTCGTCAGTGTTACTGTAAGGATGGCTCGTTGACAAACTCAAGGAAGCCTCAAGAAACCCAGAAAGAGCCGAAGACATTCCATCCAATCATCACTAGAGGAACGTTCTATAATGTCAACATGTAGCTTCCCTATTGGAT         ]
[+] EMBL CD116235             [                                                                                                                                     ATCCCAGCCTTCAAATAAATCTAATGATTTATGTAGCTCATATCTGTTTCATGCCCACTTGAACCAATATTTATGTATTTACTTAGATAAATAAATAAATATCATTACATACTCTAGTTGATCATCTTGGAAAATAATTTAATGACAATGTTTAAATGCAATTCGTCA TGTTACTGTAAGGATGGCTCGTTGACAAGCTCAAGGAAGCCTCAAGAAACCCAGAAAGAGCCGAAGACATTCCACCCAATCATCACTAGAGGAACGTTCTATAATGTCAACATGTAGCTTCCCTATTGGATAAATACATG]


>consensus_9938#5 GTTTGTCAGTGGCTACTCTGGGAATGCATCTCCTTACGTTGCTTCATTGAGTTATGGATC AGACCTATAGATATCAGGTTGTGGGCGTGGCCCCCTGGGAAACCACCTACTTCGCTTTGG ACATCCGGATAGTATCCCAGCCTTCAAATAAATCTAATGATTTATGTAGCTCATATCTGT TTCATGCCCACTTGAACCAATATTTATGTATTTACATAGATCAATAAATAAATATCATTA CATACTCTAGTTGATCATCTTGGAAAATAATTTAATGACAATGTTTAAATGCAATTCGTC AGTGTTACTGTAAGGATGGCTCGTTGACAAACTCAAGGAAGCCTCAAGAAACCCAGAAAG AGCCGAAGACATTCCATCCAATCATCACTAGAGGAACGTTCTATAATGTCAACATGTAGC TTCCCTATTGGATAAATACATG



consensusID : consensus_9938#6
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 417
fasta sequence
                              [TTGGAGAGTTCCTTGAAGTGTTCTGTCCATCTGTTCCACTTTTCTTGAATTTCAGTGATTGTCTTTCCTTCTTTGTTCTTGACTGGTCTCTCTGGTTTGCTAAATTTCCCTGCTAGTTTCTTCGTCGTTTCATATAGTTGTTTCATATTTTCTTCTCTTACAGCTCTTCCCTCTGTCGTTGTCATATCTTCCACGTACTTGTACTTGTCGGCTCTAATGCTCTTCATCACTTTCTTGTTTACTTCTGTGTATTCAGATTGTGCCTTGACCTTCTCTGTTCATGT-TCGACT-GTTGTT--AATTGCTAGTTTC--TTGTTCTTCCTTTCTTGAATCTTGTCCAGGGTTTCGATAGAGATCCATTCCTTATGATGATGCTTGTTGCGTCACAGAACCTCTTGACACGTTGAAGTTAGTGCTTCT]

[+] EMBL CD146984             [TTGGAGAGTTCCTTGAAGTGTTCTGTCCATCTGTTCCACTTTTCTTGAATTTCAGTGATTGTCTTTCCTTCTTTGTTCTTGACTGGTCTCTCTGGTTTGCTAAATTTCCCTGCTAGTTTCTTCGTCGTTTCATATAGTTGTTTCATATTTTCTTCTCTTACAGCTCTTCCCTCTGTCGTTGTCATATCTTCCACGTACTTGTACTTGTCGGCTCTAATGCTCTTCATCACTTTCTTGTTTACTTCTGTGTATTCAGATTGTGCCTTGACCTTCTCTGTTCATGT TCGACT GTTGTT  AATTGCTAGTTTC  TTGTTCTTCCTTTCTTGAATCTTGTCCAGGGTTTCGATAGAGATCCATTCCTTATGATGATGCTTGTTGCGTCACAGAACCTCTTGACACGTTGAAGTTAGTGCTTCT]
[+] EMBL CD146973             [TTGGAGAGTTCCTTGAAGTGTTCTGTCCATCTGTTCCACTTTTCTTGAATTTCAGTGATTGTCTTTCCTTCTTTGTTCTTGACTGGTCTCTCTGGTTTGCTAAATTTCCCTGCTAGTTTCTTCGTCGTTTCATATAGTTGTTTCATATTTTCTTCTCTTACAGCTCTTCCCTCTGTCGTTGTCATATCTTCCACGTACTTGTACTTGTCGGCTCTAATGCTCTTCATCACTTTCTTGTTTACTTCTGTGTATTCAGATTGTGCCTTGACCTTCTCTGTTCATGT TCGACT GTTGTT  AATTGCTAGTTTC  TTGTTCTTCCTTTCTTGAATCTTGTCCAGGGTTTCGATAGAGATCCATTCCTTATGATGATGCTTGTTGCGTCACAGAACCTCTTGACACGTTGAAGTTAGTGCTTCT]
[+] EMBL CD146962             [TTGGAGAGTTCCTTGAAGTGTTCTGTCCATCTGTTCCACTTTTCTTGAATTTCAGTGATTGTCTTTCCTTCTTTGTTCTTGACTGGTCTCTCTGGTTTGCTAAATTTCCCTGCTAGTTTCTTCGTCGTTTCATATAGTTGTTTCATATTTTCTTCTCTTACAGCTCTTCCCTCTGTCGTTGTCATATCTTCCACGTACTTGTACTTGTCGGCTCTAATGCTCTTCATCACTTTCTTGTTTACTTCTGTGTATTCAGATTGTGCCTTGACCTTCTCTGTTCATGTNTCGACTGGTTGTTNNAATTGCTAGTTTCTTTTGTTCTTC                                                                                                   ]


>consensus_9938#6 TTGGAGAGTTCCTTGAAGTGTTCTGTCCATCTGTTCCACTTTTCTTGAATTTCAGTGATT GTCTTTCCTTCTTTGTTCTTGACTGGTCTCTCTGGTTTGCTAAATTTCCCTGCTAGTTTC TTCGTCGTTTCATATAGTTGTTTCATATTTTCTTCTCTTACAGCTCTTCCCTCTGTCGTT GTCATATCTTCCACGTACTTGTACTTGTCGGCTCTAATGCTCTTCATCACTTTCTTGTTT ACTTCTGTGTATTCAGATTGTGCCTTGACCTTCTCTGTTCATGTTCGACTGTTGTTAATT GCTAGTTTCTTGTTCTTCCTTTCTTGAATCTTGTCCAGGGTTTCGATAGAGATCCATTCC TTATGATGATGCTTGTTGCGTCACAGAACCTCTTGACACGTTGAAGTTAGTGCTTCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9938#2      ------------------------------------------------------------
consensus_9938#4      ------------------------------------------------------------
consensus_9938#6      ------------------------------------------------------------
consensus_9938#0      TACTTGTTAGCGTTATTTTATCCATTTTCTGTGGAAGAAATGTATACTGTGTATTCCGAT 60
consensus_9938#3      ------------------------------------------------------------
consensus_9938#5      ------------------------------------------------------------
consensus_9938#1      ------------------------------------------------------------
                                                                                  

consensus_9938#2      ------------------------------------------------------------
consensus_9938#4      ------------------------------------------------------------
consensus_9938#6      ------------------------------------------------------------
consensus_9938#0      TAGTGAAAGATCATCGTCGAATTACCATACGCTAATTTAGCTAAACTAAAATTTTGCTTT 120
consensus_9938#3      ------------------------------------------------------------
consensus_9938#5      ------------------------------------------------------------
consensus_9938#1      ------------------------------TGAAATTCCCTTGAAGAGGAACATTTATTA 30
                                                                                  

consensus_9938#2      -------------------------GTGCGGTACCCCAAAAACTTCTGAGCATCACCGTT 35
consensus_9938#4      ------------------------------------------------------------
consensus_9938#6      ------------------------------------------------------------
consensus_9938#0      CATTTATTATTCAAGTTAAGAATAGTTGTAACTTTTACTATCTAAGAGAGTCCCACATTT 180
consensus_9938#3      -----------------------------------------------------------G 1
consensus_9938#5      ------------------------------------------------------------
consensus_9938#1      TAGTTTAGGTGCTCAGATAGTATCACAACTCTCATAGAAAAAATGACAGATATGAGGTTC 90
                                                                                  

consensus_9938#2      ACACAACTATTATTTACTCTTTTATTACTCGACATAATTAGCGCCACAACCAGTTCGTAC 95
consensus_9938#4      ------CTATTATTTACTCTTTTATTACTCGACATAATTAGCGCCACAACCAGTTCGTAC 54
consensus_9938#6      ----------------------------TTGGAGAGTTCCTTGAAGTGTTCTGTCCATCT 32
consensus_9938#0      TGTTCACATTTATATAGACCTGACGCTTTCAGTTTTATGCCGTACATATCTGGTTCGTTT 240
consensus_9938#3      GCGACTCCACCAAATAATCCTTTGATGTCTGATTCTTTTGCATCAGCCGGAAAACC--CC 59
consensus_9938#5      ------------GTTTGTCAGTGGCTACTCTGGGAATGCATCTCCTTACGTTGCTTCATT 48
consensus_9938#1      CTGCTTCGGCTTATGAAGACGTGCGAACCAAATATTTTGTCACTCAGAGGTTTATCTTAC 150
                                                                                  

consensus_9938#2      AAACACCAAATCACACCAACTCTCGTAACACTCAACAGAACACCATCCTC----GTCCAA 151
consensus_9938#4      AAACACCAAATCACACCAACTCTCGTTACACTCAACAGAACACCGTCCTC----GTCCAA 110
consensus_9938#6      G--TTCCACTTTTCTTGAATTTCAGTGATTGTCTTTCCTTCTTTGTTCTT----GACTGG 86
consensus_9938#0      GAAAATAAACTTATTAAGATATCTGCCGGTCTATTAAACCCACCATACCTCAAAGAAGGA 300
consensus_9938#3      AAACTATGGCAGTCTTGAGCTCTGGTCCGCCTGATAATGCCAGTCTCAGTTTTTTACCGG 119
consensus_9938#5      GAGTTATGGATCAGACCTATAGATATCAGGTTG-TGGGCGTGGCCCCCTGGGAAACCACC 107
consensus_9938#1      ATTATTTAATACTGACGAGTTGCTTTATTCCCCATAAGATTTGCTTTTTCTGATGTATGA 210
                                                                                  

consensus_9938#2      TCAGTCACCACCGTTACACA----ACTATGA-TGAACCCCATAAATAC-----TCGACGT 201
consensus_9938#4      TCAGTCACCACCGTTACACA----ACTATTA-TTTACTCTTTTATTAC-----TCGACAT 160
consensus_9938#6      TCTCTCTGGTTTGCTAAATT----TCC-CTG-CTAGTTTCTTCGTCGT-----TTCATAT 135
consensus_9938#0      TATTCAATGTCTGAAAAATATGGGACTATTGGTTGGTTTATTGGTCGCCAGCTTATGTAT 360
consensus_9938#3      CATGGAACTTTGGCTGTGCG-ACAGCGGCCTTTCGGACTTCCAAGGAAG----GAAATGT 174
consensus_9938#5      TACTTCGCTTTGGACATCCG----GATAGTATCCCAGCCTTCAAATAAATCTAATGATTT 163
consensus_9938#1      CTCCTAA-AATAGACAGCCGAAATAATACCAGGTCTTCCTCACGACAAGAGT-TGTTTAT 268
                                  *                                              *

consensus_9938#2      AATCAGCGCCACAACCAGTTGG--GACAAACACCAAATCACACCAACGCTGGTTACAATC 259
consensus_9938#4      AATTAGCGCCACAACCAGTTCG--TACAAACACCAAATCACACCAACTCTCGTAACACTC 218
consensus_9938#6      AGTT-GTTTCATATTTTCTTC----TCTTACAGCTCTTCCCTCTGTCGTT-GTCATATCT 189
consensus_9938#0      GAAGTGAATAATAACAAGGAAGAAGATAATCATGTGAATTCGCAGTCCTCCTGTTTATCA 420
consensus_9938#3      AAGAAATGCTTTTCTTATGTGAC-ATCCTTGATTCACCAGCATCGCCGCCCAACACACCC 233
consensus_9938#5      ATGTAGC-TCATATCTGTTTCATGCCCACTTGAACCAATATTTATGTATTTACATAGATC 222
consensus_9938#1      ACTATGGTGAGTTGAAAGTTTCGGTGAAGGTAAGAAGTGGCTAGCAAACCAAAAGTGTGG 328
                                                                                  

consensus_9938#2      AACAGACTGC-ATACTCGTGCAAGC-AGT--CACCACCGTCACACAACTATTATGTACCC 315
consensus_9938#4      AACAGAACACCATCCTCGTCCAATC-AGT--CACCACCGTTACACAACTATTATTTACGA 275
consensus_9938#6      TCCACGTACTTGTACTTGTCGGCTCTAAT--GCTCTTCATCACTT---TCTTGTTTACTT 244
consensus_9938#0      AAAGAAGCAACAGATTCTGAAGCTCAAATATGTTGCCTGCAGGAACAAGACAGCTTCAAA 480
consensus_9938#3      AACTCAACGTCCACATCACTCTCGTCGCT--GCCGACAGGGACTGGACGCTTGGATCCAC 291
consensus_9938#5      AATAAATAAATATCATTACATACTCTAGT-TGATCATCTTGGAAAATAATTTAATGACAA 281
consensus_9938#1      ATTGAGCAAGTATATTATGCCAAAATGAC-GCACCACTAAAACCACTACATTTTTTAATA 387
                                     *                                            

consensus_9938#2      TGTTATTACTCGACGTACTTAGCGCCACTACCAGTTGGTACCAACACCACATCACACCAA 375
consensus_9938#4      -ATTACAAACAGATTTTCACAACAACAGCAACAGCGG---CCTGTTTGA----ATACCCG 327
consensus_9938#6      CTGTGTATTCAGAT-TGTGCCTTGACCTTCTCTGTTCATGTTCGACTGTTGTTAATTGCT 303
consensus_9938#0      GACTACAACAAAACGGATTTGAGATCTTTGTCAGCCGATATTAATGGTCTCATGTTATCA 540
consensus_9938#3      --CTCTTACTGGAGTGACTT--TACCGTTGACGN--GATGCTTGTTCTTTGATTCCGGAG 345
consensus_9938#5      TGTTTAAATGCAATTCGT-CAGTGTTACTGTAAG-----GATGGCTCGTTGACAAACTCA 335
consensus_9938#1      GTCAGTCAGTCAGC-TACAACGTAGGACCAGGCACATATATACATCGGTCCAAGTTGCCA 446
                                                                                  

consensus_9938#2      CGCTGTCTTTTATTACTCGACATAATTAGCGCC-----ACA--ACCAGTTCGTACAGACA 428
consensus_9938#4      GGCTACCTGTTTCTGCCATGTAAATATTTCATC-----AAGTTATCTGTTTTTTTAGTTG 382
consensus_9938#6      AGTTTCTTGTTCTTCCTTTCTTGAATCTTGTCC-----AGG------GTTTCGATAGAGA 352
consensus_9938#0      TTTAAAACATCCGCGAGTGATGGAGATTTGGATGGA--AAGAAAGTTGTTTTTCTCATCG 598
consensus_9938#3      TAGCACTAGGCTTGGAAGGTGTAATTGTTGAATTAT--TTAACAACTGCTTTGAACGACC 403
consensus_9938#5      AGGAAGCCTCAAGAAACCCAGAAAGAGCCG--------AAGACATTCCATCCAATCATCA 387
consensus_9938#1      TATTTCGTTAGCACAACAAGATGAACACTGGATTCATAGAAGTAATTAATTTAGTGGTGG 506
                                             *                         *          

consensus_9938#2      C---CAAATCACACCAACT--CTCGTTAC-ACTCAACAGGACACCATACTCCGTC-AAGC 481
consensus_9938#4      TTT-CAACTTATCCTTATG--TTTGTTA--ATTGCATAACCTATACAGGCGCGTT-TATG 436
consensus_9938#6      TCCATTCCTTATGATGATG--CTTGTTG---CGTCACAGAACCTCTTGACACGTTGAAGT 407
consensus_9938#0      TTTGCAAAATGGGTGTGTA--CTAGATA---CTCCGCAGATGTCATTCACACAAACTTAC 653
consensus_9938#3      CTAAAAAAATGGAAAAAAAAACGCGTTA----ATCATAAGAACGACGGAAACACACATAA 459
consensus_9938#5      CTAGAGGAACGT-TCTATAATGTCAACA---TGTAGCTTCCCTATTGGATAAATACATG- 442
consensus_9938#1      TAGTAGTATATAAATTATAGGTTGTATATAAGGATATAGTACAGGAAGGGAGATATGAAG 566
                                                                                  

consensus_9938#2      AGTCACCAACGGT----------------------------------------------- 494
consensus_9938#4      AAACGCTTACGTCCTTTCGAGATTATCCA------------------------------- 465
consensus_9938#6      TAGTGCTTCT-------------------------------------------------- 417
consensus_9938#0      AGTCTTCCACTCCAGATCAAATTCAGTGTGAATGAAATTCTGAACACAGTCAAGAATTTT 713
consensus_9938#3      CAACCCATGAGCCCCATCCCACTC------------------------------------ 483
consensus_9938#5      ------------------------------------------------------------
consensus_9938#1      CAATTTTAATCTTACGGTTTAAGGGAAGATAAAGA------------------------- 601
                                                                                  

consensus_9938#2      ----------------
consensus_9938#4      ----------------
consensus_9938#6      ----------------
consensus_9938#0      CCATATACACCAATGT 729
consensus_9938#3      ----------------
consensus_9938#5      ----------------
consensus_9938#1      ----------------
                                      




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)