These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9944#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 909 fasta sequence [GGTGGTACTTGAAACTGGAAAGCTTGGTTGTTGTCTCTGAGATGATTATCTTCGCGCTATTTCTTCTCACGATCAATTACATTGTCTCGGTTCCTGTCATACCCACTTTTGACAATGCTGAGGAAGCTGCCCAATACAAGAAATATTTAGAAGAGGCACCTAAAGCAATAAACGTGGATCCTAAAACATTGGATTCGGCTCGAAAAGTTTTTGTAGAAAATTCTTTAGATGATTTATTACTACTTTGGAATACAAGTTTACGGGATAAAGACGATGAAACAAAACGTTATCTAGTCGAAAAACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGT-AAC-ACTATGGGCGGTGTTGTTCACAAAACTTTGCCAGGATATG-AAGCGGAATCACCGAATAAAATTGTTGATAAGTTAAAAAAATTGGATGATGAGCAGGAAAGGAAGTACCAAGAGCATGTAGCTAAAGAAAAAAGTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATA-TTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCGATACAGATGGTAATTACTTGGTTTCTCGTGATGAATTTCTAAGAGGTGTTAATCAGCCTTATCCATCAT] [+] EMBL CD183249 [GGTGGTACTTGAAACTGGAAAGCTTGGTTGTTGTCTCTGAGATGATTATCTTCGCGCTATTTCTTCTCACGATCAATTACATTGTCTCGGTTCCTGTCATACCCACTTTTGACAATGCTGAGGAAGCTGCCCAATACAAGAAATATTTAGAAGAGGCACCTAAAGCAATAAACGTGGATCCTAAAACATTGGATTCGGCTCGAAAAGTTTTTGTAGAAAATTCTTTAGATGATTTATTACTACTTTGGAATACAAGTTTACGGGATAAAGACGATGAAACAAAACGTTATCTAGTCGAAAAACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGT AAC ACTATGGGCGGTGTTGTTCA ] [+] EMBL CD189732 [ CTTGAAACTGGAAAGCTTGGTTGTTGTCTCTGAGATGATTATCTTCGCGCTATTTCTTCTCACGATCAATTACATTGTCTCGGTTCCTGTCATACCCACTTTTGACAATGCTGAGGAAGCTGCCCAATACAAGAAATATTTAGAAGAGGCACCTAAAGCAATAAACGTGGATCCTAAAACATTGGATTCGGCTCGAAAGGTTTTTGTAGAAAATTCTTTAGATGATTTATTACTACTTTGGAATACAAGTTTACGGGATAAAGACGATGAAACAAAACGTTATCTAGTCGAAAAACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGT AAC ACTATGGGCGGTGTTGTTCA ] [+] EMBL CD132817 [ TGGAAAGCTTGGTTGTTGTCTCTGAGATGATTATCTTCGCGCTATTTCTTCTCACGATCAATTACATTGTCTCGGTTCCTGTCATACCCACTTTTGACAATGCTGAGGAAGCTGCCCAATACAAGAAATATTTAGAAGAGGCACCTAAAGCAATAAACGTGGATCCTAAAACATTGGATTCGGCTCGAAAAGTTTTTGTAGAAAATTCTTTAGATGATTTATTACTACTTTGGAATACAAGTTTACGGGATAAAGACGATGAAACAAAACGTTATCTAGTCGAAAAACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGT AAC ACTATGGGCGGTGTTGTTCACAAAACTTTGCCAGGATATG AAGCGGAATCACCGAATAAAATTGTTGATAAGTTAAAAAAATTGGATGATGAGCAGGGAAGGAAGTACCAAGAGCATGTAGCTAAAGAAAAAAGTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGANNAACAC AGCGTCATCCCAG ] [-] EMBL CD122733 [ GATGATTATCTTCGCGCTATTTCTTCTCACGATCAATTACATTGTCTCGGTTCCTGTCATACCCACTTTTGACAATGCTGAGGAAGCTGCCCAATACAAGAAATATTTAGAAGAGGCACCTAAAGCAATAAACGTGGATCCTAAAACATTGGATTCGGCTCGAAAAGTTTTTGTAGAAAATTCTTTAGATGATTTATTACTACTTTGGAATACAAGTTTACGGGATAAAGACGATGAAACAAAACGTTATCTAGTCGAAAAACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGT AAC ACTATGGGCGGTGTTGTTCACAAAACTTTGCCAGGATATG AAGCGGAATCACCGAATAAAATTGTTGATAAGTTAAAAAAATTGGATGATGAGCAGGAAAGGAAGTACCAAGAGCATGTAGCTAAAGAAAAAAGTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGAGCCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCC ] [-] EMBL CD157315 [ ATGAAACAAAACGTTATCTAGTCGAAAAACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGTAAACAACTATGGNCGGTGTTGTTCACAAAACTTTGCCAGGATATGAAAGCGGAATCACCGAATAAAATTGTTGATAAGTTAAAAAAATTGGATGATGAGCAGGAAAGGAAGTACCAAGAGCATGTAGCTAAAGAAAAAAGTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCTTCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATATTTGGGAAAAATAT ] [-] EMBL CD155101 [ CAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATA TTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCGATACAGA ] [-] EMBL CD155020 [ CAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATA TTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCGATACAGA ] [-] EMBL CD155102 [ GAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATA TTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCGATACAGA ] [-] EMBL CD155021 [ GAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATA TTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGA TTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCGATACAGA ] [+] EMBL CD139973 [ ATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCGATACAGATGGTAATTACTTGGTTTCTCGTGATGAATTTCTAAGAGGTGTTAATCAGCCTTATCCATCAT] consensusID : consensus_9944#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 362 fasta sequence [ACTGCCGCCTTCATAAGTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATATTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAATAAAAAATGCGACAGAAATT] [+] EMBL CD137042 [ACTGCCGCCTTCATAAGTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATATTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAATAAAAAATGCGACAGAAATT] [+] EMBL CD185510 [ CAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATATTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAGCGTTATTTGCTGATATCGATCTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9944#0 GGTGGTACTTGAAACTGGAAAGCTTGGTTGTTGTCTCTGAGATGATTATCTTCGCGCTAT 60 consensus_9944#1 ------------------------------------------------------------ consensus_9944#0 TTCTTCTCACGATCAATTACATTGTCTCGGTTCCTGTCATACCCACTTTTGACAATGCTG 120 consensus_9944#1 ------------------------------------------------------------ consensus_9944#0 AGGAAGCTGCCCAATACAAGAAATATTTAGAAGAGGCACCTAAAGCAATAAACGTGGATC 180 consensus_9944#1 ------------------------------------------------------------ consensus_9944#0 CTAAAACATTGGATTCGGCTCGAAAAGTTTTTGTAGAAAATTCTTTAGATGATTTATTAC 240 consensus_9944#1 ------------------------------------------------------------ consensus_9944#0 TACTTTGGAATACAAGTTTACGGGATAAAGACGATGAAACAAAACGTTATCTAGTCGAAA 300 consensus_9944#1 ------------------------------------------------------------ consensus_9944#0 AACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGTAACACTATGGGCGGTG 360 consensus_9944#1 ------------------------------------------------------------ consensus_9944#0 TTGTTCACAAAACTTTGCCAGGATATGAAGCGGAATCACCGAATAAAATTGTTGATAAGT 420 consensus_9944#1 ------------------------------------------------------------ consensus_9944#0 TAAAAAAATTGGATGATGAGCAGGAAAGGAAGTACCAAGAGCATGTAGCTAAAGAAAAAA 480 consensus_9944#1 --------------------------------------------ACTGCCGCCTTCATAA 16 ** * ** consensus_9944#0 GTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGA 540 consensus_9944#1 GTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGA 76 ************************************************************ consensus_9944#0 GTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTC 600 consensus_9944#1 GTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTC 136 ************************************************************ consensus_9944#0 AAGATCAGCTTAAAGAATATTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATT 660 consensus_9944#1 AAGATCAGCTTAAAGAATATTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATT 196 ************************************************************ consensus_9944#0 CTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGG 720 consensus_9944#1 CTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGG 256 ************************************************************ consensus_9944#0 TTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACG 780 consensus_9944#1 TTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACG 316 ************************************************************ consensus_9944#0 ACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCG 840 consensus_9944#1 ACCCATGGGAAGAAAGACATGATCAATAAAAAATGCGACAGAAATT-------------- 362 ************************** ******************* consensus_9944#0 ATACAGATGGTAATTACTTGGTTTCTCGTGATGAATTTCTAAGAGGTGTTAATCAGCCTT 900 consensus_9944#1 ------------------------------------------------------------ consensus_9944#0 ATCCATCAT 909 consensus_9944#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||