Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9944 cluster # 9944       Sequences # 12       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9944#0 length = 909 sequences # 10  
consensus_9944#1 length = 362 sequences # 2  

consensusID : consensus_9944#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 909
fasta sequence
                              [GGTGGTACTTGAAACTGGAAAGCTTGGTTGTTGTCTCTGAGATGATTATCTTCGCGCTATTTCTTCTCACGATCAATTACATTGTCTCGGTTCCTGTCATACCCACTTTTGACAATGCTGAGGAAGCTGCCCAATACAAGAAATATTTAGAAGAGGCACCTAAAGCAATAAACGTGGATCCTAAAACATTGGATTCGGCTCGAAAAGTTTTTGTAGAAAATTCTTTAGATGATTTATTACTACTTTGGAATACAAGTTTACGGGATAAAGACGATGAAACAAAACGTTATCTAGTCGAAAAACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGT-AAC-ACTATGGGCGGTGTTGTTCACAAAACTTTGCCAGGATATG-AAGCGGAATCACCGAATAAAATTGTTGATAAGTTAAAAAAATTGGATGATGAGCAGGAAAGGAAGTACCAAGAGCATGTAGCTAAAGAAAAAAGTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATA-TTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCGATACAGATGGTAATTACTTGGTTTCTCGTGATGAATTTCTAAGAGGTGTTAATCAGCCTTATCCATCAT]

[+] EMBL CD183249             [GGTGGTACTTGAAACTGGAAAGCTTGGTTGTTGTCTCTGAGATGATTATCTTCGCGCTATTTCTTCTCACGATCAATTACATTGTCTCGGTTCCTGTCATACCCACTTTTGACAATGCTGAGGAAGCTGCCCAATACAAGAAATATTTAGAAGAGGCACCTAAAGCAATAAACGTGGATCCTAAAACATTGGATTCGGCTCGAAAAGTTTTTGTAGAAAATTCTTTAGATGATTTATTACTACTTTGGAATACAAGTTTACGGGATAAAGACGATGAAACAAAACGTTATCTAGTCGAAAAACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGT AAC ACTATGGGCGGTGTTGTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD189732             [       CTTGAAACTGGAAAGCTTGGTTGTTGTCTCTGAGATGATTATCTTCGCGCTATTTCTTCTCACGATCAATTACATTGTCTCGGTTCCTGTCATACCCACTTTTGACAATGCTGAGGAAGCTGCCCAATACAAGAAATATTTAGAAGAGGCACCTAAAGCAATAAACGTGGATCCTAAAACATTGGATTCGGCTCGAAAGGTTTTTGTAGAAAATTCTTTAGATGATTTATTACTACTTTGGAATACAAGTTTACGGGATAAAGACGATGAAACAAAACGTTATCTAGTCGAAAAACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGT AAC ACTATGGGCGGTGTTGTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD132817             [               TGGAAAGCTTGGTTGTTGTCTCTGAGATGATTATCTTCGCGCTATTTCTTCTCACGATCAATTACATTGTCTCGGTTCCTGTCATACCCACTTTTGACAATGCTGAGGAAGCTGCCCAATACAAGAAATATTTAGAAGAGGCACCTAAAGCAATAAACGTGGATCCTAAAACATTGGATTCGGCTCGAAAAGTTTTTGTAGAAAATTCTTTAGATGATTTATTACTACTTTGGAATACAAGTTTACGGGATAAAGACGATGAAACAAAACGTTATCTAGTCGAAAAACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGT AAC ACTATGGGCGGTGTTGTTCACAAAACTTTGCCAGGATATG AAGCGGAATCACCGAATAAAATTGTTGATAAGTTAAAAAAATTGGATGATGAGCAGGGAAGGAAGTACCAAGAGCATGTAGCTAAAGAAAAAAGTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGANNAACAC AGCGTCATCCCAG                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD122733             [                                        GATGATTATCTTCGCGCTATTTCTTCTCACGATCAATTACATTGTCTCGGTTCCTGTCATACCCACTTTTGACAATGCTGAGGAAGCTGCCCAATACAAGAAATATTTAGAAGAGGCACCTAAAGCAATAAACGTGGATCCTAAAACATTGGATTCGGCTCGAAAAGTTTTTGTAGAAAATTCTTTAGATGATTTATTACTACTTTGGAATACAAGTTTACGGGATAAAGACGATGAAACAAAACGTTATCTAGTCGAAAAACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGT AAC ACTATGGGCGGTGTTGTTCACAAAACTTTGCCAGGATATG AAGCGGAATCACCGAATAAAATTGTTGATAAGTTAAAAAAATTGGATGATGAGCAGGAAAGGAAGTACCAAGAGCATGTAGCTAAAGAAAAAAGTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGAGCCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCC                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD157315             [                                                                                                                                                                                                                                                                                 ATGAAACAAAACGTTATCTAGTCGAAAAACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGTAAACAACTATGGNCGGTGTTGTTCACAAAACTTTGCCAGGATATGAAAGCGGAATCACCGAATAAAATTGTTGATAAGTTAAAAAAATTGGATGATGAGCAGGAAAGGAAGTACCAAGAGCATGTAGCTAAAGAAAAAAGTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCTTCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATATTTGGGAAAAATAT                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD155101             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATA TTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCGATACAGA                                                              ]
[-] EMBL CD155020             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATA TTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCGATACAGA                                                              ]
[-] EMBL CD155102             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATA TTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCGATACAGA                                                              ]
[-] EMBL CD155021             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATA TTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGA TTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCGATACAGA                                                              ]
[+] EMBL CD139973             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCGATACAGATGGTAATTACTTGGTTTCTCGTGATGAATTTCTAAGAGGTGTTAATCAGCCTTATCCATCAT]


>consensus_9944#0 GGTGGTACTTGAAACTGGAAAGCTTGGTTGTTGTCTCTGAGATGATTATCTTCGCGCTAT TTCTTCTCACGATCAATTACATTGTCTCGGTTCCTGTCATACCCACTTTTGACAATGCTG AGGAAGCTGCCCAATACAAGAAATATTTAGAAGAGGCACCTAAAGCAATAAACGTGGATC CTAAAACATTGGATTCGGCTCGAAAAGTTTTTGTAGAAAATTCTTTAGATGATTTATTAC TACTTTGGAATACAAGTTTACGGGATAAAGACGATGAAACAAAACGTTATCTAGTCGAAA AACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGTAACACTATGGGCGGTG TTGTTCACAAAACTTTGCCAGGATATGAAGCGGAATCACCGAATAAAATTGTTGATAAGT TAAAAAAATTGGATGATGAGCAGGAAAGGAAGTACCAAGAGCATGTAGCTAAAGAAAAAA GTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGA GTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTC AAGATCAGCTTAAAGAATATTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATT CTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGG TTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACG ACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCG ATACAGATGGTAATTACTTGGTTTCTCGTGATGAATTTCTAAGAGGTGTTAATCAGCCTT ATCCATCAT



consensusID : consensus_9944#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 362
fasta sequence
                              [ACTGCCGCCTTCATAAGTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATATTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAATAAAAAATGCGACAGAAATT]

[+] EMBL CD137042             [ACTGCCGCCTTCATAAGTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATATTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAATAAAAAATGCGACAGAAATT]
[+] EMBL CD185510             [                                              CAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATATTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAGCGTTATTTGCTGATATCGATCTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAA                                ]


>consensus_9944#1 ACTGCCGCCTTCATAAGTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGT GCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATT CACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATATTGGGAAAAATATGAGGGATTGGAT GAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTAT CTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCT GAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAATAAAAAATGCGACAGAAA TT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9944#0      GGTGGTACTTGAAACTGGAAAGCTTGGTTGTTGTCTCTGAGATGATTATCTTCGCGCTAT 60
consensus_9944#1      ------------------------------------------------------------
                                                                                  

consensus_9944#0      TTCTTCTCACGATCAATTACATTGTCTCGGTTCCTGTCATACCCACTTTTGACAATGCTG 120
consensus_9944#1      ------------------------------------------------------------
                                                                                  

consensus_9944#0      AGGAAGCTGCCCAATACAAGAAATATTTAGAAGAGGCACCTAAAGCAATAAACGTGGATC 180
consensus_9944#1      ------------------------------------------------------------
                                                                                  

consensus_9944#0      CTAAAACATTGGATTCGGCTCGAAAAGTTTTTGTAGAAAATTCTTTAGATGATTTATTAC 240
consensus_9944#1      ------------------------------------------------------------
                                                                                  

consensus_9944#0      TACTTTGGAATACAAGTTTACGGGATAAAGACGATGAAACAAAACGTTATCTAGTCGAAA 300
consensus_9944#1      ------------------------------------------------------------
                                                                                  

consensus_9944#0      AACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGTAACACTATGGGCGGTG 360
consensus_9944#1      ------------------------------------------------------------
                                                                                  

consensus_9944#0      TTGTTCACAAAACTTTGCCAGGATATGAAGCGGAATCACCGAATAAAATTGTTGATAAGT 420
consensus_9944#1      ------------------------------------------------------------
                                                                                  

consensus_9944#0      TAAAAAAATTGGATGATGAGCAGGAAAGGAAGTACCAAGAGCATGTAGCTAAAGAAAAAA 480
consensus_9944#1      --------------------------------------------ACTGCCGCCTTCATAA 16
                                                                     **       * **

consensus_9944#0      GTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGA 540
consensus_9944#1      GTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGA 76
                      ************************************************************

consensus_9944#0      GTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTC 600
consensus_9944#1      GTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTC 136
                      ************************************************************

consensus_9944#0      AAGATCAGCTTAAAGAATATTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATT 660
consensus_9944#1      AAGATCAGCTTAAAGAATATTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATT 196
                      ************************************************************

consensus_9944#0      CTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGG 720
consensus_9944#1      CTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGG 256
                      ************************************************************

consensus_9944#0      TTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACG 780
consensus_9944#1      TTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACG 316
                      ************************************************************

consensus_9944#0      ACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCG 840
consensus_9944#1      ACCCATGGGAAGAAAGACATGATCAATAAAAAATGCGACAGAAATT-------------- 362
                      ************************** *******************              

consensus_9944#0      ATACAGATGGTAATTACTTGGTTTCTCGTGATGAATTTCTAAGAGGTGTTAATCAGCCTT 900
consensus_9944#1      ------------------------------------------------------------
                                                                                  

consensus_9944#0      ATCCATCAT 909
consensus_9944#1      ---------
                               




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)