|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9950#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 997 fasta sequence
[GAGCCATATTCGGCAAATTTGATCGTTGTCGATATTTGTTTTCTTCGCTCTACTACTGAGCAGAAAACACTGAAGATATATAGTTCTACTGAGTCGTCGTGCTAATTGCTCGCACGCATAAATTTCGTCTTAGCAATGGCGTCTAGGGTTGGTCATAGACCTGAAGGTACAGATGGTGCTGATTTTCGTCATAGAGAACGAGTTTGTACTCAGTACAGCTTGAGCCCATTATTGAAACGTCGCATCAAATTTGTTTATTTTCTCCACCTGATGTTGTGGGTGCTCATGTTCGCACGCTTGTTACCAGAACTGTGCTTAAGACTTGGATTCCGAACAAGGCTTATGGTGGAAAAGTGGCCGTTTCCTCAAGGCGAGTTGTGGGAGTACGTTTGGTTTTTCGGTAGTATCTTCCCTACCCTATTCGGATATATTTCATTACAAAGAAGCCGAGCTGGATTAATGCGAGTTTCTCTTACTGGAACTGTCGTCTTCGGTCTTGGCACTGTAGCTGTTGGATGCTTCACAAACGCATTCGAGCTGATGACCTATTACCAAAGTCGTGTGGCTAAGCACTATTTCTATGAATTTCCCGTTATCGTTCTGGCCTACATATTTTTCTCTTTATGTGTTCAGGTACACGGCTTTTCTGTCTATTTCGGTTACAAGTTATACTGTATCTGGTCTGTCAAAGTGCGCAAGGCGCGGTGATTGTTGTTCCTAAACTCATTTGCTTCACAGTGATCAATGGATGCAGAGAGTATTCCCTCTTTTTGCGTTACTTGTGTTGGGAACCTGACTGTTTAGAAAGACCGAGTACATTTTTTAAATGAATGCAGCAGTTTCCAAATGTTTGTGTACAGTTCTTCGTTAAAAAGTACTGTTCGGTTTTTGTAATTATTCTCGCTAAATTTAAACAGTCGTTATCAACTCTTCCTTATGTATATAGAACATAGCTTTAATATATATGGCATATCGACAGTCAAAAAAAAAAAAAAAA]
[+] EMBL CD081759 [GAGCCATATTCGGCCGAGGTGATCGTTGTCGATATTTGTTTTCTTCGCTCTACTACTGAGCAGAAAACACTGAAGATATATAGTTCTACTGAGTCGTCGTGCTAATTGCTCGCACGCATAAATTTCGTCTTAGCAATGGCGTCTAGGGTTGGTCATAGACCTGAAGGTACAGATGGTGCTGATTTTCGTCATAGAGAACGAGTTTGTACTCAGTACAGCTTGAGCCCATTATTGAAACGTCGCATCAAATTTGTTTATTTTCTCCACCTGATGTTGTGGGTGCTCATGTTCGCACGCTTGTTACCAGAACTGTGCTTAAGACTTGGATTCCGAACAAGGCTTATGGTGGAAAAGTGGCCGTTTCCTCAAGGCGAGTTGTGGGAGTACGTTTGGTTTTTCGGTAGTATCTTCCCTACCCTATTCGGATATATTTCATTACAAAGAAGCCGAGCTGGATTAATGCGAGTTTCTCTTACTGGAACTGTCGTCTTCGGTCTTGGCACTGTAGCTGTTGGATGCTTCACAAACGCATTCGAGCTGATGACCTATTACCAAAGTCGTGTGGCTAAGCACTATTTCTATGAATTTCCCGTTATCGTTCTGGCCTACATATTTTTCTCTTTATGTGTTCAGGTACACGGCTTTTCTGTCTATTTCGGTTACAAGTTATACTGTATCTGGTCTGTCAAAGTGCGCAAGGCGCGGTGATTGTTGTTCCTAAACTCATTTGCTTCACAGTGATCAATGGATGCAGAGAGTATTCCCTCTTTTTGCGTTACTTGTGTTGGGAACCTGACTGTTTAGAAAGACCGAGTACATTTTTTAAATGAATGCAGCAGTTTCCCAATGGTTGTGTACAGTTCTTCGTT AAAAGTACTGTTCGGTTTTTGTAA TATTCTCGCTAAATTaa ]
[+] EMBL CD159628 [ AAATTTGATCGTTGTCGATATTTGTTTTCTTCGCTCTACTACTGAGCAGAAAACACTGAAGATATATAGTTCTACTGAGTCGTCGTGCTAATTGCTCGCACGCATAAATTTCGTCTTAGCAATGGCGTCTAGGGTTGGTCATAGACCTGAAGGTACAGATGGTGCTGATTTTCGTCATAGAGAACGAGTTTGTACTCAGTACAGCTTGAGCCCATTATTGAAACGTCGCATCAAATTTGTTTATTTTCTCCACCTGATGTTGTGGGTGCTCATGTTCGCACGCTTGTTACCAGAACTGTGCTTAAGACTTGGATTCCGAACAAGGCTTATGGTGGAAAAGTGGCCGTTTCCTCAAGGCGAGTTGTGGGAGTACGTCTGGTTTCTCGGTA ]
[+] EMBL CD159643 [ AAATTTGATCGTTGTCGATATTTGTTTTCTTCGCTCTACTACTGAGCAGAAAACACTGAAGATATATAGTTCTACTGAGTCGTCGTGCTAATTGCTCGCACGCATAAATTTCGTCTTAGCAATGGCGTCTAGGGTTGGTCATAGACCTGAAGGTACAGATGGTGCTGATTTTCGTCATAGAGAACGAGTTTGTACTCAGTACAGCTTGAGCCCATTATTGAAACGTCGCATCAAATTTGTTTATTTTCTCCACCTGATGTTGTGGGTGCTCATGTTCGCACGCTTGTTACCAGAACTGTGCTTAAGACTTGGATTCCGAACAAGGCTTATGGTGGAAAAGTGGCCGTTTCCTCAAGGCGAGTTGTGGGAGTACGTTTGGTTTTTCGGTAGTATCTTCCCTACCCTATTCGGATATATCTCATTACAAAGAAGCCGAGCTGGATTAATGCGAGTTTCTCTTACTGGAACTGTCGTCTTCGGTCT ]
[+] EMBL CD188600 [ TTTGATCGTTGTCGATATTTGTTTTCTTCGCTCTACTACTGAGCAGAAAACACTGAAGATATATAGTTCTACTGAGTCGACGTGCTAATTGCTCGCACGCATAAATTTCGTCTTAGCAATGGCGTCTAGGGTTGGTCATAGACCTGAAGGTACAGATGGTGCTGATTTTCGTCATAGAGAACGAGTTTGTACTCAGTACAGCTCGAGCCCATTATTGAAACGTCGCATCAAATTTGTTTATTTTCTCCACCTGATGTTGTGGGTGCTCATGTTCGC ]
[-] EMBL CD159680 [ AATTGCTCGCACGCATAAATTTCGTCTTAGCAATGGCGTCTAGGGTTGGTCATAGACCTGAAGGTACAGATGGTGCTGATTTTCGTCATAGAGAACGAGTTTGTACTCAGTACAGCTTGAGCCCATTATTGAAACGTCGCATCAAATTTG TTATTTTCTCCACCTGATGTTGTGGGTGCTCATGTTCGCACGCTTGTTACCAGAACTGTGCTTAAGACTTGGATTCCGAACAAGGCTTGTGGTGGAAAAGTGGCCGTTTCCTCAAGGCGAGTTGTGGGAGTACGTTTGGTTTTTCGGTAGTATCTTCCCTACCCTATTCGGATATATTTCATTACAAAGAAGCCGAGCTGGATTAATGCGAGTTTCTCTTACTGGAACTGTCGTCTTCGGTCTTGGCACTGTAGCTGTTGGATGCTTCACAAACGCAT ]
[-] EMBL CD075492 [ TTGGTCATAGACCTGAAGGTACAGATGGTGCTGATTTTCGTCATAGAGAACGAGTTTGTACTCAGTACAGCTTGAGCCCATTATTGAAACGTCGCATCAAATTTGTTTATTTTCTCCACCTGATGTTGTGGGTGCTCATGTTCGCACGCTTGTTACCAGAACTGTGCTTAAGACTTGGATTCCGAACAAGGCTTATGGTGGAAAAGTGGCCGTTTCCTCAAGGCGAGTTGTGGGAGTACGTTTGGTTTTTCGGTAGTATCTTCCCTACCCTATTCGGATATATTTCATTACAAAGAAGCCGAGCTGGATTAATGCGAGTTTCTCTTACTGGAACTGTCGTCTTCGGTCTTGGCACTGTAGCTGTTGGATGCTTCACAAACGCATTCGAGCTGATGACCTATTACCAAAGTCGTGTGGCTAAGCACTATTTCTATGAATTTCCCGTTATCGTTCTGGCCTACATATTTTTCTCTTTATGTGTTCAGGTACACGGCTTTTCTGTCTATTTCGGTTACAAGTTATACTGTATCTGGTCTGTCAAAGTGCGCAAGGCGCGGTGATTGTTGTTCCTAAACTCATTTGCTTCACAGTGATCAATGGATGCAGAGAGTATTCCCTCTTTTTGCGTTACTTGTGTTGGGAACCTGACTGTTTAGAAAGACCGAGTACATTTTTTAAATGAATGCAGCAGTTTCCAAATGTTTGTGTACAGTTCTTCGTTAAAAAGTACTGTTCGGTTTTTGTAATTATTGTCGCTAAATTTAAACA ]
[+] EMBL CD180279 [ TTATTGAAACGTCGCATCAAATTTGTTTATTTTCTCCACCTGATGTTGTGGGTGCTCATGTTCGCACGCTTGTTACCAGAACTGTGCTTAAGACTTGGATTCCGAACAAGGCTTATGGTGGAAAAGTGGCCGTGTCCTCAAGGCGAGTTGTGGGAGTACGTTTGGTTTTTCGGTAGTATCTTCCCTACCCTATTCGGATATATTTCATTACAAAGAAGCCGAGCTGGATTAATGCGAGTTTCTCTTACTGGAACTGTCGTCTTCGGTCTTGGCACTGTAGCTGTTGGATGCTTCACAAACGCATTCGAGCTGATGACCTATTACCAAAGTCGTGTGGCTAAGCACTATTTCTATGAA ]
[-] EMBL AI974974 [ GTCGTCTTCGGTCTTGGCACTGTAGCTGTTGGATGCTTCACAAACGCATTCGAGCTGATGACCTATTACCAAAGTCGTGTGGCTAAGCACTATTTCTATGAATTTCCCGTTATCGTTCTGGCCAACATATTTTTCTCTTAATGTGTTCAGGAACACGGCTTTTCTGTCTATTTCGGTTACAAGTTATACTGTATCTGGTCTGTCAAAGTGCGCAAGGCGCGGTGATTGTTGTTCCTAAACTCATTTGCTTCACAGTGATCAATGGATGCAGAGAGTATTCCCTCTTTTTGCGTTACTTGTGTTGGGAACCTGACTGTTTAGAAAGACCGAGTACATTTTTTAAATGAATGCAGCAGTTTCCAAATGTTTGTGAACAGTTCTTCGTTAAAAAGAACTGTTCGGTTTTTGTAATTATTCTC ]
[-] EMBL AI975161 [ AAGTTGTGTGGCTAAGCACTATTTCTATAAATTTCCCGTTATCGTTCTGGCCTACATATTTTTCTCTTTATGTGTTCAGGTACACGGCTTTTCTGTCTATTTCGGTTACAAGTTATACTGTATCTGGTCTGTCAAAGTGCGCAAGGAGCGGTTATTGTTGTTCCTAAACTCATTTGCTTCACAGTGATCAATGGATGCAAAGAGTATTCCCTCTTTTTGCGTTACTTGTGTTGGGAACCTAACTGTTTATAAAGACCGAGTACATTTTTTAAATGAATGCAACAGTTTCCAAATGTTTGTGTACAGTTCTTCGTTAAAAAGCACTGTTCGGTTTTTGTAATTATTCTC ]
[-] EMBL AI395161 [ gTCTGGCCCACATA TTTTCTCGCTATGTGTTCAGGTACACGGGTTTTCTGTCTATTTCGGTTACAAGGTTTACTGTATCTGGTCTGTCAAAGTGCGCAAGGCGCGGTGAATGTTGTTCCTAAACTCATTTGCTTCACAGTGATCAATGGATGCAGAGAGTATTCCCTCTTTTTGCGTTACTTGTGTTGGGAACCTGACTGTTTAGAAAGACCGAGTACATTTTTTAAATGAATGCAGCAGTTTCCAAATGTTTGTGTACAGTTCTTCGTTAAAAAGTACTGTTCGGTTTTTGTAATTATTCTCGCTAAATTTAAACAGTCGTTATCAACTCTTCCTTATGTATATAGAACATAGCTTTAATATATATGGCATATCGACAGTCAAAAAAAAAAAAAAAA]
consensusID : consensus_9950#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence
[TGTGTTCAGGTACGCGGCTTTTCAGTATATTTCGGTTACAAGTTAAACTGTATTTGGTCTGTCAAAGTGCGCAAGGCGCGGTGATTGTTGTTCATAAATTCATTTGCTTCACAGTGATCAATGGATGCAGAGAGTATTCCCTCTTTTTGAGTTACTTGTGTTGGGAACCTGTTTGTTTAAAAAGACCGAGAACATTTTTTAAATGAATGCAGCAGTTTCCAAATGTTTGTGTACAGTTGTTCGTTAAAAAGTACTGTTCGGTTTTTGTAATTATTCTCGCTAAATTTAAAAAAAAAAAAAAAAACATGCATGACATGCCCTCGCGC]
[-] EMBL BF936203 [TGTGTTCAGGTACGCGGCTTTTCAGTATATTTCGGTTACAAGTTAAACTGTATTTGGTCTGTCAAAGTGCGCAAGGCGCGGTGATTGTTGTTCATAAATTCATTTGCTTCACAGTGATCAATGGATGCAGAGAGTATTCCCTCTTTTTGAGTTACTTGTGTTGGGAACCTGTTTGTTTAAAAAGACCGAGAACATTTTTTAAATGAATGCAGCAGTTTCCAAATGTTTGTGTACAGTTGTTCGTTAAAAAGTACTGTTCGGTTTTTGTAATTATTCTCGCTAAATTTAAAAAAAAAAAAAAAAACATGCATGACATGCCCTCGCGC]
consensusID : consensus_9950#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 234 fasta sequence
[TCCCTCTTTTGGNGTTACTTGTGTTGGGAACCTGACTGTTTAGAAAGACCGAGTACATNTTTTAAATGAATGCAGAAGTTNCCAAATGTTGGTGTACAGTTCTCCGNTAAAAAGTNCTGTNCGGTTTTGGNAATTATNCTCGCTAAATTTAAACAGTCGTTATCAACTCTCCCTTATGTATATAGAACATAGCTTTANTATATATGGCATTTCGNACAAAACTAACNNNATCNA]
[+] EMBL SM6991 [TCCCTCTTTTGGNGTTACTTGTGTTGGGAACCTGACTGTTTAGAAAGACCGAGTACATNTTTTAAATGAATGCAGAAGTTNCCAAATGTTGGTGTACAGTTCTCCGNTAAAAAGTNCTGTNCGGTTTTGGNAATTATNCTCGCTAAATTTAAACAGTCGTTATCAACTCTCCCTTATGTATATAGAACATAGCTTTANTATATATGGCATTTCGNACAAAACTAACNNNATCNA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9950#0 GAGCCATATTCGGCAAATTTGATCGTTGTCGATATTTGTTTTCTTCGCTCTACTACTGAG 60
consensus_9950#2 ------------------------------------------------------------
consensus_9950#1 ------------------------------------------------------------
consensus_9950#0 CAGAAAACACTGAAGATATATAGTTCTACTGAGTCGTCGTGCTAATTGCTCGCACGCATA 120
consensus_9950#2 ------------------------------------------------------------
consensus_9950#1 ------------------------------------------------------------
consensus_9950#0 AATTTCGTCTTAGCAATGGCGTCTAGGGTTGGTCATAGACCTGAAGGTACAGATGGTGCT 180
consensus_9950#2 ------------------------------------------------------------
consensus_9950#1 ------------------------------------------------------------
consensus_9950#0 GATTTTCGTCATAGAGAACGAGTTTGTACTCAGTACAGCTTGAGCCCATTATTGAAACGT 240
consensus_9950#2 ------------------------------------------------------------
consensus_9950#1 ------------------------------------------------------------
consensus_9950#0 CGCATCAAATTTGTTTATTTTCTCCACCTGATGTTGTGGGTGCTCATGTTCGCACGCTTG 300
consensus_9950#2 ------------------------------------------------------------
consensus_9950#1 ------------------------------------------------------------
consensus_9950#0 TTACCAGAACTGTGCTTAAGACTTGGATTCCGAACAAGGCTTATGGTGGAAAAGTGGCCG 360
consensus_9950#2 ------------------------------------------------------------
consensus_9950#1 ------------------------------------------------------------
consensus_9950#0 TTTCCTCAAGGCGAGTTGTGGGAGTACGTTTGGTTTTTCGGTAGTATCTTCCCTACCCTA 420
consensus_9950#2 ------------------------------------------------------------
consensus_9950#1 ------------------------------------------------------------
consensus_9950#0 TTCGGATATATTTCATTACAAAGAAGCCGAGCTGGATTAATGCGAGTTTCTCTTACTGGA 480
consensus_9950#2 ------------------------------------------------------------
consensus_9950#1 ------------------------------------------------------------
consensus_9950#0 ACTGTCGTCTTCGGTCTTGGCACTGTAGCTGTTGGATGCTTCACAAACGCATTCGAGCTG 540
consensus_9950#2 ------------------------------------------------------------
consensus_9950#1 ------------------------------------------------------------
consensus_9950#0 ATGACCTATTACCAAAGTCGTGTGGCTAAGCACTATTTCTATGAATTTCCCGTTATCGTT 600
consensus_9950#2 ------------------------------------------------------------
consensus_9950#1 ------------------------------------------------------------
consensus_9950#0 CTGGCCTACATATTTTTCTCTTTATGTGTTCAGGTACACGGCTTTTCTGTCTATTTCGGT 660
consensus_9950#2 ------------------------------------------------------------
consensus_9950#1 ------------------------TGTGTTCAGGTACGCGGCTTTTCAGTATATTTCGGT 36
consensus_9950#0 TACAAGTTATACTGTATCTGGTCTGTCAAAGTGCGCAAGGCGCGGTGATTGTTGTTCCTA 720
consensus_9950#2 ------------------------------------------------------------
consensus_9950#1 TACAAGTTAAACTGTATTTGGTCTGTCAAAGTGCGCAAGGCGCGGTGATTGTTGTTCATA 96
consensus_9950#0 AACTCATTTGCTTCACAGTGATCAATGGATGCAGAGAGTATTCCCTCTTTTTGCGTTACT 780
consensus_9950#2 -----------------------------------------TCCCTCTTTTGGNGTTACT 19
consensus_9950#1 AATTCATTTGCTTCACAGTGATCAATGGATGCAGAGAGTATTCCCTCTTTTTGAGTTACT 156
********** * ******
consensus_9950#0 TGTGTTGGGAACCTGACTGTTTAGAAAGACCGAGTACATTTTTTAAATGAATGCAGCAGT 840
consensus_9950#2 TGTGTTGGGAACCTGACTGTTTAGAAAGACCGAGTACATNTTTTAAATGAATGCAGAAGT 79
consensus_9950#1 TGTGTTGGGAACCTGTTTGTTTAAAAAGACCGAGAACATTTTTTAAATGAATGCAGCAGT 216
*************** ****** ********** **** **************** ***
consensus_9950#0 TTCCAAATGTTTGTGTACAGTTCTTCGTTAAAAAGTACTGTTCGGTTTTTGTAATTATTC 900
consensus_9950#2 TNCCAAATGTTGGTGTACAGTTCTCCGNTAAAAAGTNCTGTNCGGTTTTGGNAATTATNC 139
consensus_9950#1 TTCCAAATGTTTGTGTACAGTTGTTCGTTAAAAAGTACTGTTCGGTTTTTGTAATTATTC 276
* ********* ********** * ** ******** **** ******* * ****** *
consensus_9950#0 TCGCTAAATTTAAACAGTCGTTATCAACTCTTCCTTATGTATA-TAGAACATAGCTTTAA 959
consensus_9950#2 TCGCTAAATTTAAACAGTCGTTATCAACTCTCCCTTATGTATA-TAGAACATAGCTTTAN 198
consensus_9950#1 TCGCTAAATTTAAAAAAAAAAAAAAAAACATGCATGACATGCCCTCGCGC---------- 326
************** * * ** * * * * * * * *
consensus_9950#0 TATATATGGCATATCGACAGTCAAAAAAAAAAAAAAAA 997
consensus_9950#2 TATATATGGCATTTCG--NACAAAACTAACNNNATCNA 234
consensus_9950#1 --------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||