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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9951#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 747 fasta sequence
[TTTGCAGCTCTTGAATACAATTTTCTAGGTTCTTTTCGTTGGATGACTTTGAAGATTTGAGTGATTCCAACTGGTCGAGTAATGACGACTTTTGCTGAGAACAACTGGACAGTTCAAATTCAAGCTCTTCAATGCGACATTGAAGTCGGCTAATATCTGCGATGGGTAACTTTGGAATATCTGCATGATCCTCACGTAATTTAGCCAACTCTGCTTCAGCAGAAGCAAGTTTTGCATTCGATTTTTCAAGATCATCCATGAGTAACTCAAGTTCGGAAGACCTGCCAGTTTCAGTAGCGTTCACTTCTGTTTTAAGCCTAAATAATTCAGATTGTGCCATTTCCAGTGCTTTGGAAATGGCTATATTTTTAGATTCAAAGCTACCAAGCTTCTCCTCTGCCTCAGCTTTAAAGATGGCAAACTCTTGCTCTTTGGACTCCAACTTCCTTTGATATTCGTCCACTATCTTCGAACTGTTCAGCTGAATTTGAGTTTCCAAAGAAACCGTCAACTCGTCAAGACGTTTCTTCAGGCGTTTATTTTCGCGTTCTAAAATAAGCTCTTAATTTGGGAAATACCGTAATTTTTGAGCTCCTGAACTTTCGTTTTTAATTCGTCACAGCTTTCCTTGAATTTCCGTGATTCGAACTCAAATTCTACAGCTTTGTCAGCTCGTTTTTGTAGGGAATGAAGTTCGCCAAGTGCGAACGAGGGATCTGGAAGCTCCATAAGTTGTTTGTACATTGA]
[+] EMBL CD124799 [TTTGCAGCTCTTGAATACAATTTTCTAGGTTCTTTTCGTTGGATGACTTTGAAGATTTGAGTGATTCCAACTGGTCGAGTAATGACGACTTTTGCTGAGAACAACTGGACAGTTCAAATTCAAGCTCTTCAATGCGACATTGAAGTCGGCTAATATCTGCGATGGGTAACTTTGGAATATCTGCATGATCCTCACGTAATTTAGCCTACTCTGCTTCAGCAGAAGCAAGTTTTGCATTCGATTTTTCAAGATCATCCATGAGTAACTCAAGTTCGGAAGACCTGCCAGTTTCAGTAGCGTTCACTTCTGTTTTAAGCCTAAATAATTCAGATTGTGCCATTTCCAGTGCTTTGGAAATGGCTATATTTTTAGATTCAAAGCTACCAAGCTTCTCCTCTGCCTCAGCTTTAAAGATGGCAAACTCTTGCTCTTTGGACTCCAACTTCCTTTGATATTCGTCCACTATCTTCGAACTGTTCAGCTGAATTTGAGTTTCCAAAGAAACCG ]
[+] EMBL CD124794 [TTTGCAGCTCTTGAATACAATTTTCTAGGTTCTTTTCGTTGGATGACTTTGAAGGTTTGAGTGATTCCAACTGGTCGAGTAATGACGACTTTTGCTGAGAACAACTGGACAGTTCAAATTCAAGCTCTTCAATGCGACATTGAAGACGGCTAATATCTGCGATGGGTAACTTTGGAATATCTGCATGATCCTCACGTAATTTAGCCAACTCTGCTTCAGCAGAAGCAAGTTTTGCATTCGATTTTTCAAGATCATCCATGAGTAACTCAAGTTCGGAAGACCTGCCAGTTTCAGTAGCGTTCACTTCTGTTCTAAGCCTAAATAATTCAGATTGTGCCATTTCCAGTGCTTTGGAAATGGCTATATTTTTAGATTCAAAGCTACCAAGCTTCTCCTCTGCCTCAGCTTTAAAGATGGCAAACTCTTGCTCTTTGGACTCCAACTTCCTTTGATATTCGTCCACTATCTTCGAACTGTTCAGCTGAATTTGAGTTTCCAAAGAAACCG ]
[-] EMBL CD065111 [ GTAATGACGACTTTTGCTGAGAACAGCTGGACAGTTCAAATTCAAGCTCTTCAATGCGACACTGAAGTCGGCTAATATCTGCGATGGGTAACTTTGGAATATCTGCATGATCCTCACGTAATTTAGCCAACTCTGCTTCAGCAGAAGCAAGTTTTGCATTCGATTTTTCAAGATCATCCACGAGTAACTCAAGTTCGGAAGACCTGCCAGTTTCAGTAGCGTTCACTTCTGTTTTAAGCCTAAATAATTCAGATTGTGCCATTTCCAGTGCTTTGGAAATGGCTATATTTTTAGATTCAAAGCTACCAAGCTTCTCCTCTGCCTCAGCTTTAAAGATGGCAAACTCTTGCTCTTTGGACTC ]
[+] EMBL CD195854 [ TAATGACGACTTTTGCTGAGAACAACTGGACAGTTCAAATTCAAGCTCTTCAATGCGACATTGAAGTCGGCTAATATCTGCGATGGGTAACTTTGGAATATCTGCATGATCCTCACGTAATTTAGCCAACTCTGCTTCAGCAGAAGCAAGTTTTGCATTCGATTTTTCAAGATCATCCATGAGTAACTCAAGTTCGGAAGACCTGCCAGTTTCAGTAGCGTTCACTTCTGTTTTAAGCCTAAATAATTCAGATTGTGCCATTTCCAGTGCTTTGGAAATGGCTATATTTTTAGATTCAAAGCTACCAAGCTTCTCC ]
[+] EMBL CD186522 [ TAAATAATTCAGATTGTGCCATTTCCAGTGCTTTGGAAATGGCTATATTTTTAGATTCAAAGCTACCAAGCTTCTCCTCTGCCTCAGCTTTAAAGATGGCAAACTCTTGCTCTTTGGACTCCAACTTCCTTTGATATTCGTCCACTATCTTCGAACTGTTCAGCTGAATTTGAGTTTCCAAAGAAACCGTCAACTCGTCAAGACGTTTCTTCAGGCGTTTATTTTCGCGTTCTAAAATAAGCTCTTAATTTGGGAAATACCGTAATTTTTGAGCTCCTGAACTTTCGTTTTTAATTCGTCACAGCTTTCCTTGAATTTCCGTGATTCGAACTCAAATTCTACAGCTTTGTCAGCTCGTTTTTGTAGGGAATGAAGTTCGCCAAGTGCGAACGAGGGATCTGGAAGCTCCATAAGTTGTTTGTACATTGA]
consensusID : consensus_9951#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 408 fasta sequence
[AAAAGAACCTAGAAAATTGTATTCAAGAGCTGCAAACAACAATTTGTCAGACTAAAGCTTCTCTAGAAGCAGCTAATATTAAACTTGACAGTCAATCTGATTATGAAGAAATAAAACGCGAACTATCTCTTTTACGCTCAATTGAATTTCCTGAAAATGTCCAGCTAAATGGATCGGATAATTTTATTCAAGATGAAATATCCAATCGTGCTCCATTGGAAGTACTTCTTTTAAAAAAGAATAAATCATTGGAGAATCAGCTGGCAGAAGTAAACATTTTACGTGAAAAGTTACAAATTGAACTTACTCAAGTCCAATCAAATGAAGTTGAAGCCAATCAACGAATCAAAGAACATACAGAATTGATAAAGTTATTAGAATCTGATCTTTATCGTTTGCAGACAAATC]
[+] EMBL CD157779 [AAAAGAACCTAGAAAATTGTATTCAAGAGCTGCAAACAACAATTTGTCAGACTAAAGCTTCTCTAGAAGCAGCTAATATTAAACTTGACAGTCAATCTGATTATGAAGAAATAAAACGCGAACTATCTCTTTTACGCTCAATTGAATTTCCTGAAAATGTCCAGCTAAATGGATCGGATAATTATATTCAAGATGAAATATCCAATCGTGCTCCATTGGAAGTACTTCTTTTAAAAAAGAATAAATCATTGGAGAATCAGCTGGCAGAAGTAAACATTTTACGTGA ]
[+] EMBL CD157700 [AAAAGAACCTAGAAAATTGTATTCAAGAGCTGCAAACAACAATTTGTCAGACTAAAGCTTCTCTAGAAGCAGCTAATATTAAACTTGACAGTCAATCTGATTATGAAGAAATAAAACGCGAACTATCTCTTTTACGCTCAATTGAATCTCCTGAAAATGTCCAGCTAAATGGATCGGATAATTTTATTCAAGATGAAATATCCAATCGTGCTCCTTTGGAAGTACTTCTTTTAAAA ]
[+] EMBL CD157621 [AAAAGAACCTAGAAAATTGTATTCAAGAGCTGCAAACAACAATTTGTCAGACTAAAGCTTCTCTAGAAGCAGCTAATATTAAACTTGACAGTCAATCTGATTATGAAGAAATAAAACGCGAACTATCTCTTTTACGCTCAATTG ATTTCCTTGAAATGTCC ]
[+] EMBL CD157796 [gaaatggCCTATAAAATTGTATTAAAGAGCTGCAAACAACAATTTGTCAGACTAAAGCTTCTCTAGAAGCAGCTAATATTAAACTTGACAGTCAATCTGATTATGAAGAAATAAAACGCGAACTATCTCTTTTACGCTCAATTGAATTTCCTGAAAATGTCCAGCTAAATGGATCGGATAATTTTATTCAAGATGAAATATCCAATCGTGCTCCATTGGAAGTACTTCTTTTAAAAAAGAATAAATCATTGGAGAATCAGCTGGCAGAAGTAAACATTTTACGTGAAAAGTTACAAATTGAACTTACTCAAGTCCAATCAAATGAAGTTGAAGCCAATCAACGAATCAAAGAACATACAGAATTGATAAAGTTATTAGAATCTGATCTTTATCGTTTGCAGACAAATC]
[+] EMBL CD157629 [ atAAACTGTATTCTAGAGCAGCAAACAACAATTTGTCAGACTAAAGCTTCTCTAGAAGCAGCTAATATTAAACTTGACAGTCAATCTGATTATGAAGAAATAAAACGCGAACTATCTCTTTTACGCTCAATTGAATTTCCTGAAAATGTCCAGCTAAATGGATCGGATAANTTTATTCAAGATGAAATATCCAATCGTGCTCCATTGGAAGTACTTCTTTTAAAAAAG ATAAATCATTGGAGAt ]
[+] EMBL CD157645 [ ATTCTGGAGCAGCATACAACAGTTTGTCAGACTAAAGCTTCTCTAGAAGCAGCTAATATTAAACTTGACAGTCAATCTGATTATGAAGAAATAAAACGCGAACTATCTCTTTTACGCTCAATTGAATTTCCTGAAAATGTCCAGCTAAATAGGTCGGATAATTTTATTCAAGATGAAATATCCAATCGTGCTCCATTGGAAGTACTTCTTTTAAAAAAGAATAAATCATTGGAGAATCAGTTGGCAGAAGTAAACATTTTACGTGAAAAAGTACAANATGAACTTACTCAAGTCCAA ]
consensusID : consensus_9951#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence
[AAGATGGCAAACTCTTGCTCTTTGGACTCCAACTTCCTTTGATATTCGTCCACTATCTTCGAACTGTTCAGCTGAATTTGAGTTTCCAAAGAAGCCGTCAACTCGTCAAGACGTTTCTTCAGGCGTTTATTTTCGCGTTAGTAATTTTTGAGCTCCTGAACTTTCGTTTTTAATTAGTCACAGCTTTCCTTGAATTTCCGTGATTCGAACTCAAATTTAACAGCTTTGTCAGCTCGTTTTTGTAGGGAATGAAGTTCGCCAAGTGCGAACGAGGGATCTGGAAGCTCAATAAGTTGTCTGTACATTGAAAGATAAGCATTGCTCGGCATATATACACCTCTTTTGAAGTGC]
[-] EMBL CD124037 [AAGATGGCAAACTCTTGCTCTTTGGACTCCAACTTCCTTTGATATTCGTCCACTATCTTCGAACTGTTCAGCTGAATTTGAGTTTCCAAAGAAGCCGTCAACTCGTCAAGACGTTTCTTCAGGCGTTTATTTTCGCGTTAGTAATTTTTGAGCTCCTGAACTTTCGTTTTTAATTAGTCACAGCTTTCCTTGAATTTCCGTGATTCGAACTCAAATTTAACAGCTTTGTCAGCTCGTTTTTGTAGGGAATGAAGTTCGCCAAGTGCGAACGAGGGATCTGGAAGCTCAATAAGTTGTCTGTACATTGAAAGATAAGCATTGCTCGGCATATATACACCTCTTTTGAAGTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9951#0 TTTGCAGCTCTTGAATACAATTTTCTAGGTTCTTTTCGTTGGATGACTTTGAAGATTTGA 60
consensus_9951#2 ------------------------------------------------------------
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 GTGATTCCAACTGGTCGAGTAATGACGACTTTTGCTGAGAACAACTGGACAGTTCAAATT 120
consensus_9951#2 ------------------------------------------------------------
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 CAAGCTCTTCAATGCGACATTGAAGTCGGCTAATATCTGCGATGGGTAACTTTGGAATAT 180
consensus_9951#2 ------------------------------------------------------------
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 CTGCATGATCCTCACGTAATTTAGCCAACTCTGCTTCAGCAGAAGCAAGTTTTGCATTCG 240
consensus_9951#2 ------------------------------------------------------------
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 ATTTTTCAAGATCATCCATGAGTAACTCAAGTTCGGAAGACCTGCCAGTTTCAGTAGCGT 300
consensus_9951#2 ------------------------------------------------------------
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 TCACTTCTGTTTTAAGCCTAAATAATTCAGATTGTGCCATTTCCAGTGCTTTGGAAATGG 360
consensus_9951#2 ------------------------------------------------------------
consensus_9951#1 ------------------------------------------------------------
consensus_9951#0 CTATATTTTTAGATTCAAAGCTACCAAGCTTCTCCTCTGCCTCAGCTTTAAAGATGGCAA 420
consensus_9951#2 --------------------------------------------------AAGATGGCAA 10
consensus_9951#1 -------------------------AAAAGAACCTAGAAAATTGTATTCAAGAGCTGCAA 35
* ****
consensus_9951#0 ACTCTTGCTCTTTGGACTCCAACTTCCTTTGATATTCGTCCACTATCTTCGAACTGTTCA 480
consensus_9951#2 ACTCTTGCTCTTTGGACTCCAACTTCCTTTGATATTCGTCCACTATCTTCGAACTGTTCA 70
consensus_9951#1 ACAACAATTTGTCAGACTAAAGCTTCTCTAGAAG-----CAGCTAATATTAAACTTGACA 90
** * * **** * **** * ** * *** * **** **
consensus_9951#0 GCTGAATTTGAGTTTCCAAAGAAACCGTCAACTCGTCAAGACGTTTCTTCAGGCGTTTAT 540
consensus_9951#2 GCTGAATTTGAGTTTCCAAAGAAGCCGTCAACTCGTCAAGACGTTTCTTCAGGCGTTTAT 130
consensus_9951#1 GTC-AATCTGA--TTATGAAGAAAT----AAAACG-CGAACTATCTCTTTTA-CGCTCAA 141
* *** *** ** ***** ** ** * * * **** ** * *
consensus_9951#0 TTTCGCGTTCTAAAATAAGCTCTTAATTTGGGAAATACCGTAATTTTTGAGCTCCTGAAC 600
consensus_9951#2 TTTCGCGTTA-----------------------------GTAATTTTTGAGCTCCTGAAC 161
consensus_9951#1 TTGAATTTCCTGAAAATGTCCAGCTAAATGGATCGGATAATTTTATTCAAGATGAAATAT 201
** * * * ** ** * *
consensus_9951#0 TT--TCGTTTTTAATTCGTCACAGCTTTCCTTGAATTTCCGTGATTCGAACTCAAATTCT 658
consensus_9951#2 TT--TCGTTTTTAATTAGTCACAGCTTTCCTTGAATTTCCGTGATTCGAACTCAAATTTA 219
consensus_9951#1 CCAATCGTGCTCCATTGGAAGTA-CTTCTTTTAAAAAAGAATAAATCATTGGAGAATCAG 260
**** * *** * * *** ** ** * * ** ***
consensus_9951#0 ACAGCTTTGTCAGCTCGTTTTTGTAGGGAAT--------GAAGTTCGCCAAGTGCGAACG 710
consensus_9951#2 ACAGCTTTGTCAGCTCGTTTTTGTAGGGAAT--------GAAGTTCGCCAAGTGCGAACG 271
consensus_9951#1 CTGGCAGAAGTAAACATTTTACGTGAAAAGTTACAAATTGAACTTACTCAAGTCCAATCA 320
** * *** ** * * *** ** ***** * * *
consensus_9951#0 AGGGATCTGGAAGC---TCCATAAGTTGTTTG-TACATTGA------------------- 747
consensus_9951#2 AGGGATCTGGAAGC---TCAATAAGTTGTCTG-TACATTGAAAGATAAGCATTGCTCGGC 327
consensus_9951#1 AATGAAGTTGAAGCCAATCAACGAATCAAAGAACATACAGAATTGATAAAGTTATTAGAA 380
* ** * ***** ** * * * * * **
consensus_9951#0 ----------------------------
consensus_9951#2 ATATATACACCTCTTTTGAAGTGC---- 351
consensus_9951#1 TCTGATCTTTATCGTTTGCAGACAAATC 408
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||