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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1128#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence
[TTAAGGAAGAAACGCTTAAAGAAGAAAACCATGGTGGCCAAACAGAGGATCCGAATGGCGAACGAGAAACACAGTAAAAACATCACCCAGCGAGGCAACGTGGCCAAGACAACGAGGAGTTTGTCCGAGGACAAAGGTGTGGGTCCGTGGCTGCTGGCGCTCTTCATCTTCGTGGTGTGTGGTTCAGCCATCTTCCAGATCATCCAGAGCATCAGGATGGGCATTTAGAGTGACGCCATCAGTCCGGAGACGGGGCTTTCCTGGAGAGAAGCCTAAATCGGAGAAGAAGAGAAGAGCAAATTACCATCCTAATTAGTCCCTCTTCCCTCCGAGACTGATCCCAAACATTCCTGAACATTCCTGAACTCAAGGACCACATGAATCCGACTCCGCCCCAGCATAATCAATGTTTACTCCAGCCGCCGACCTTCCCACCCCTGAAAACAAGCTGAGCGCCTGCCCATCGGTGTTTACCTGCGCTCTGACCCCACCTGCCCTCAGGGGCCAGAGTACAGCCACGCTGATGTGTAATCCCTGTCCTGGTCATGGGATCCCATGTGTCCCTCCTCTTCAGACTCCTCCTCAGTGAAATGAGACGGAGGTCTTTTGTATCAGAAGGTTCCGAGGTGTGACATGTGGGTTTGCAGCATGTGCAGCTTCAC]
[+] EMBL CA844762 [TTAAGGAAGAAACGCTTAAAGAAGAAAACCATGGTGGCCAAACAGAGGATCCGAATGGCGAACGAGAAACACAGTAAAAACATCACCCAGCGAGGCAACGTGGCCAAGACAACGAGGAGTTTGTCCGAGGACAAAGGTGTGGGTCCGTGGCTGCTGGCGCTCTTCATCTTCGTGGTGTGTGGTTCAGCCATCTTCCAGATCATCCAGAGCATCAGGATGGGCATTTAGAGTGACGCCATCAGTCCGGAGACGGGGCTTTCCTGGAGAGAAGCCTAAATCGGAGAAGAAGAGAAGAGCAAATTACCATCCTAATTAGTCCCTCTTCCCTCCGAGACTGATCCCAAACATTCCTGAACATTCCTGAACTCAAGGACCACATGAATCCGACTCCGCCCCAGCATAATCAATGTTTACTCCAGCCGCCGACCTTCCCACCCCTGAAAACAAGCTGAGCGCCTGCCCATCGGTGTTTACCTGCGCTCTGACCCCACCTGCCCTCAGGGGCCAGAGTACAGCCACGCTGATGTGTAATCCCTGTCCTGGTCATGGGATCCCATGTGTCCCTCCTCTTCAGACTCCTCCTCAGTGAAATGAGACGGAGGTCTTTTGTATCAGAAGGTTCCGAGGTGTGACATGTGGGTTTGCAGCATGTGCAGCTTCAC]
consensusID : consensus_1128#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence
[TTGGCACGGCTGTGGCGAGCAACACGGCACCAGAGCAGGAGCCTCTCCTTCAGCGGGACATTTCCTCTCCCACCGGACTGCTATCTTCACGTCCCCGCCCTCCAGCTCCAGATCCGGGTCGAACCTGAAACATGTCGGCGGTGCAGCGAATGAAAGTGGCGAATGAGCGACATAGCAAGACCATAACACAGCGGGGACACGTCCAGGAAACCTCGCGGCCCGTGAACGAGGAAAAGTCTCCGGTGGGTCCATGGCTGCTCGCGCTCTTCGTCTTTGTGGTCTGTGGATCAGCCATCTTCCAGATCATCCAGAGCATCAGGCAGGGCATGTGATAACCTTTGACCCTGGAGCCAAGCTGTTCGCCTGCCATCATAACCCAACCCACCCATCACACACACACACACACACACACACACACACGTTCCTGTGGAGTTGAATTCTCAGCTGTGCGTTTTCCCCTCACTCTTGCCCCCTTCTCGTTTTTAAATTGCCTTCCTTGATGAAGCTGATTAACGAGATATTGTTTATTGATTTGATCATCAGATGAAGTCT]
[+] EMBL BU805299 [TTGGCACGGCTGTGGCGAGCAACACGGCACCAGAGCAGGAGCCTCTCCTTCAGCGGGACATTTCCTCTCCCACCGGACTGCTATCTTCACGTCCCCGCCCTCCAGCTCCAGATCCGGGTCGAACCTGAAACATGTCGGCGGTGCAGCGAATGAAAGTGGCGAATGAGCGACATAGCAAGACCATAACACAGCGGGGACACGTCCAGGAAACCTCGCGGCCCGTGAACGAGGAAAAGTCTCCGGTGGGTCCATGGCTGCTCGCGCTCTTCGTCTTTGTGGTCTGTGGATCAGCCATCTTCCAGATCATCCAGAGCATCAGGCAGGGCATGTGATAACCTTTGACCCTGGAGCCAAGCTGTTCGCCTGCCATCATAACCCAACCCACCCATCACACACACACACACACACACACACACACACGTTCCTGTGGAGTTGAATTCTCAGCTGTGCGTTTTCCCCTCACTCTTGCCCCCTTCTCGTTTTTAAATTGCCTTCCTTGATGAAGCTGATTAACGAGATATTGTTTATTGATTTGATCATCAGATGAAGTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1128#0 TTAAGGAAGAAACGCTTAAAGAAGAAAACCATGGTGGCCAAACAGAGGATCCGAATGGCG 60
consensus_1128#1 ------------------------------------------------------------
consensus_1128#0 AACGAGAAACACAGTAAAAACATCACCCAGCGAGGCAACGTGGCCAAGACAACGAGGAGT 120
consensus_1128#1 ----------------TTGGCACGGCTGTGGCGAGCAACACGGC-ACCAGAGCAGGAGCC 43
** * * ***** *** * * * * *
consensus_1128#0 TTGTCCGAGGACAAAGGTGTGGGTCCGTGGCTGCTGGCGCTCTTCATCTTCGTGGTGTGT 180
consensus_1128#1 TCTCCTTCAGCGGGACATTTCCTCTCCCACCGGACTGCTATCTTCACGTCCCCGCCCTCC 103
* * * * * * * * * ** ****** * * * *
consensus_1128#0 GGTTC---AGCCATCTTCCAGATCATCCAGAGCATCAGGATGGGCATTTAGAGTGACGCC 237
consensus_1128#1 AGCTCCAGATCCGGGTCGAACCTGAAACATGTCGGCGGTGCAGCGAATGAAAGTGGCGA- 162
* ** * ** * * * * ** * * * * * * * **** **
consensus_1128#0 ATCAGTCCGGAGACGGGGCTTTCCTGGAGAGAAGCCTAAATCGGAGAAGAAGAGAAGAGC 297
consensus_1128#1 ATGAGCGACATAGCAAGACCATAACACAGCGGGGAC-ACGTCCAGGA--AACCTCGCGGC 219
** ** * * * * ** * * * * ** ** ** **
consensus_1128#0 AAATTACCATCCTAATTAGTCCCTCTTCCCTCCGAGACTGATCCCAAACATTCCTGAACA 357
consensus_1128#1 CCGTGAACGAGGAAA--AGTCTCCGGTGGGTCCATGGCTGCTC----GCGCTCTTCGTC- 272
* * * ** **** * * *** * *** ** * ** * *
consensus_1128#0 TTCCTGAACTCAAGGACCACATGAATCCGACTCCGCCCCAGCAT-AATCAATGTTTACTC 416
consensus_1128#1 TTTGTGGTCTGTGGATCAGCCATCTTCCAGATCATCCAGAGCATCAGGCAGGGCATGTGA 332
** ** ** * * * *** ** ** ***** * ** * *
consensus_1128#0 CAGCCGCCGACCTTCCCACCCCTGAAAACAAGCTGAGCGCCTGCCCATCGGTGTTTACCT 476
consensus_1128#1 TAACCTTTGACC---------CTGGAGCCAAGCTGTTCGCCTGCC-ATCA-----TAACC 377
* ** **** *** * ******* ******** *** ** *
consensus_1128#0 GCGCTCTGACCCCACCTGCCCTCAGGGGCCAGAGTACAGCCACGCTGATGTGTAATCCCT 536
consensus_1128#1 CAACCCACCCATCACACACACACACACACACACACACACACACGTTCCTGTGGAGTTGAA 437
* * * *** * * ** * *** **** * **** * *
consensus_1128#0 GTCCTGGTCATGGGATCCCATGTGTCCCTCCTCTTCAGACTCCTCCTCAGTGAAATGAGA 596
consensus_1128#1 TTCTCAGCTGTGCGTTT-------TCCCCTCACTCTTGCCCCCTTCTCGTTT---TTAAA 487
** * ** * * **** * ** * * *** *** * * * *
consensus_1128#0 CGGAGGTCTTTTGTATCAGAAGGTTCCGAGGTGTGACATGTGGGTTTG--CAGCATGTGC 654
consensus_1128#1 TTGCCTTCCTTGATGAAGCTGATTAACGAGATATTGTTTATTGATTTGATCATCAGATGA 547
* ** ** * * **** * * * * * **** ** ** **
consensus_1128#0 AGCTTCAC 662
consensus_1128#1 AGTCT--- 552
** *
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |