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Takifugu rubripes
cluster # 1262 cluster # 1262       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1262#0 length = 523 sequences # 1  
 consensus_1262#1 length = 469 sequences # 1  
consensusID : consensus_1262#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence 
                              [ACTGTTTGTCCTTGTAGGAGGATGAAGCTGAGACCCGGTTCACTGCTGCTCATCTCAGTATGGGTCGGGGTGTGGTCGGTTCCTATCGAGCGCAATGATGTTCAGCAGGAGGCTAAAGAAGAGGTGCAGGAGGAGACTGAAGACACCGGGCTGTACTACGACCGTGACCTCAGAGAGGTGATCGAGGTTCTGGAGACGGACCCTCATTTCAGAGAGAAACTGCAAACAGCAAATACAGAAGACATCAAGAACGGACATCTGGCAAAAGAACTGGACCTGGTGAGTCACCACGTGAGGACGCGGCTTGATGAGCTGAAGCGCCAGGAGGGTTCTCGTCTCAGGATGCTGTTCAAGGCCAAACTGGACAGCACCAACATACAGACTCAGCAGATGGACCACGCCTTCCTTCTGAAGCAGTTTGAACATCTGGATCCTCACAATCAAAACACATTTGAAGCCCAAAGATCTGGAGCTGCTCATCTCCACGGCCACCAAAGATCTTGGAGACTACGATGCTGACCGA]

[+] EMBL FR0058599            [ACTGTTTGTCCTTGTAGGAGGATGAAGCTGAGACCCGGTTCACTGCTGCTCATCTCAGTATGGGTCGGGGTGTGGTCGGTTCCTATCGAGCGCAATGATGTTCAGCAGGAGGCTAAAGAAGAGGTGCAGGAGGAGACTGAAGACACCGGGCTGTACTACGACCGTGACCTCAGAGAGGTGATCGAGGTTCTGGAGACGGACCCTCATTTCAGAGAGAAACTGCAAACAGCAAATACAGAAGACATCAAGAACGGACATCTGGCAAAAGAACTGGACCTGGTGAGTCACCACGTGAGGACGCGGCTTGATGAGCTGAAGCGCCAGGAGGGTTCTCGTCTCAGGATGCTGTTCAAGGCCAAACTGGACAGCACCAACATACAGACTCAGCAGATGGACCACGCCTTCCTTCTGAAGCAGTTTGAACATCTGGATCCTCACAATCAAAACACATTTGAAGCCCAAAGATCTGGAGCTGCTCATCTCCACGGCCACCAAAGATCTTGGAGACTACGATGCTGACCGA]




>consensus_1262#0
ACTGTTTGTCCTTGTAGGAGGATGAAGCTGAGACCCGGTTCACTGCTGCTCATCTCAGTA
TGGGTCGGGGTGTGGTCGGTTCCTATCGAGCGCAATGATGTTCAGCAGGAGGCTAAAGAA
GAGGTGCAGGAGGAGACTGAAGACACCGGGCTGTACTACGACCGTGACCTCAGAGAGGTG
ATCGAGGTTCTGGAGACGGACCCTCATTTCAGAGAGAAACTGCAAACAGCAAATACAGAA
GACATCAAGAACGGACATCTGGCAAAAGAACTGGACCTGGTGAGTCACCACGTGAGGACG
CGGCTTGATGAGCTGAAGCGCCAGGAGGGTTCTCGTCTCAGGATGCTGTTCAAGGCCAAA
CTGGACAGCACCAACATACAGACTCAGCAGATGGACCACGCCTTCCTTCTGAAGCAGTTT
GAACATCTGGATCCTCACAATCAAAACACATTTGAAGCCCAAAGATCTGGAGCTGCTCAT
CTCCACGGCCACCAAAGATCTTGGAGACTACGATGCTGACCGA

consensusID : consensus_1262#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 469
fasta sequence 
                              [CATAATTGGCTCTTTAAAGACCAACAACTGGAGGATGAAGCTCATACCCGGTTCACTGCTGCTCATCTCAGTATGGGTCGGGGTGTGGTCGGTTCCTATCGAGCGCAATGATGTTCAGCAGGAGGCTAAAGAAGAGGTGCAGGAGGAGACTGAAGACACCGGGCTGTACTACGACCGGTACCTCAGAGAGGTGATCGAGGTTCTGGAGACGGACCCTCATTTCAGAGAGAAACTGCAAACAGCAAATACAGAAGACATCAAGAACGGACATCTGGCAAAAGAACTGGACCTGGTGAGTCACCACGTGAGGACGCGGCTGGATGAGCTGAAGCGCCAGGAGGTTTCTCGTCTCAGGATGCTGTTCAAGGCCAAACTGGACAGCACCAACATACAGACTCAGCAGATGGACCACGCCTCCCTCCTGAAGCAGTTTGAACATCTGGATCCTCACAATCAAAACACATTTGAA]

[+] EMBL CA846287             [CATAATTGGCTCTTTAAAGACCAACAACTGGAGGATGAAGCTCATACCCGGTTCACTGCTGCTCATCTCAGTATGGGTCGGGGTGTGGTCGGTTCCTATCGAGCGCAATGATGTTCAGCAGGAGGCTAAAGAAGAGGTGCAGGAGGAGACTGAAGACACCGGGCTGTACTACGACCGGTACCTCAGAGAGGTGATCGAGGTTCTGGAGACGGACCCTCATTTCAGAGAGAAACTGCAAACAGCAAATACAGAAGACATCAAGAACGGACATCTGGCAAAAGAACTGGACCTGGTGAGTCACCACGTGAGGACGCGGCTGGATGAGCTGAAGCGCCAGGAGGTTTCTCGTCTCAGGATGCTGTTCAAGGCCAAACTGGACAGCACCAACATACAGACTCAGCAGATGGACCACGCCTCCCTCCTGAAGCAGTTTGAACATCTGGATCCTCACAATCAAAACACATTTGAA]




>consensus_1262#1
CATAATTGGCTCTTTAAAGACCAACAACTGGAGGATGAAGCTCATACCCGGTTCACTGCT
GCTCATCTCAGTATGGGTCGGGGTGTGGTCGGTTCCTATCGAGCGCAATGATGTTCAGCA
GGAGGCTAAAGAAGAGGTGCAGGAGGAGACTGAAGACACCGGGCTGTACTACGACCGGTA
CCTCAGAGAGGTGATCGAGGTTCTGGAGACGGACCCTCATTTCAGAGAGAAACTGCAAAC
AGCAAATACAGAAGACATCAAGAACGGACATCTGGCAAAAGAACTGGACCTGGTGAGTCA
CCACGTGAGGACGCGGCTGGATGAGCTGAAGCGCCAGGAGGTTTCTCGTCTCAGGATGCT
GTTCAAGGCCAAACTGGACAGCACCAACATACAGACTCAGCAGATGGACCACGCCTCCCT
CCTGAAGCAGTTTGAACATCTGGATCCTCACAATCAAAACACATTTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1262#0      --------ACTGTTT---GTCC--TTGTAGGAGGATGAAGCTGAGACCCGGTTCACTGCT 47
consensus_1262#1      CATAATTGGCTCTTTAAAGACCAACAACTGGAGGATGAAGCTCATACCCGGTTCACTGCT 60
                               ** ***   * **       ************* * ***************

consensus_1262#0      GCTCATCTCAGTATGGGTCGGGGTGTGGTCGGTTCCTATCGAGCGCAATGATGTTCAGCA 107
consensus_1262#1      GCTCATCTCAGTATGGGTCGGGGTGTGGTCGGTTCCTATCGAGCGCAATGATGTTCAGCA 120
                      ************************************************************

consensus_1262#0      GGAGGCTAAAGAAGAGGTGCAGGAGGAGACTGAAGACACCGGGCTGTACTACGACCGTGA 167
consensus_1262#1      GGAGGCTAAAGAAGAGGTGCAGGAGGAGACTGAAGACACCGGGCTGTACTACGACCGGTA 180
                      *********************************************************  *

consensus_1262#0      CCTCAGAGAGGTGATCGAGGTTCTGGAGACGGACCCTCATTTCAGAGAGAAACTGCAAAC 227
consensus_1262#1      CCTCAGAGAGGTGATCGAGGTTCTGGAGACGGACCCTCATTTCAGAGAGAAACTGCAAAC 240
                      ************************************************************

consensus_1262#0      AGCAAATACAGAAGACATCAAGAACGGACATCTGGCAAAAGAACTGGACCTGGTGAGTCA 287
consensus_1262#1      AGCAAATACAGAAGACATCAAGAACGGACATCTGGCAAAAGAACTGGACCTGGTGAGTCA 300
                      ************************************************************

consensus_1262#0      CCACGTGAGGACGCGGCTTGATGAGCTGAAGCGCCAGGAGGGTTCTCGTCTCAGGATGCT 347
consensus_1262#1      CCACGTGAGGACGCGGCTGGATGAGCTGAAGCGCCAGGAGGTTTCTCGTCTCAGGATGCT 360
                      ****************** ********************** ******************

consensus_1262#0      GTTCAAGGCCAAACTGGACAGCACCAACATACAGACTCAGCAGATGGACCACGCCTTCCT 407
consensus_1262#1      GTTCAAGGCCAAACTGGACAGCACCAACATACAGACTCAGCAGATGGACCACGCCTCCCT 420
                      ******************************************************** ***

consensus_1262#0      TCTGAAGCAGTTTGAACATCTGGATCCTCACAATCAAAACACATTTGAAGCCCAAAGATC 467
consensus_1262#1      CCTGAAGCAGTTTGAACATCTGGATCCTCACAATCAAAACACATTTGAA----------- 469
                       ************************************************           

consensus_1262#0      TGGAGCTGCTCATCTCCACGGCCACCAAAGATCTTGGAGACTACGATGCTGACCGA 523
consensus_1262#1      --------------------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)