These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [TATTACGTACCGTCAGTTTAAAGGTGCTGATTTGCGGGCCTAACGATTAATCGCCGCCATGAATTACGGTAGGCCTCCGCCAGATGTTGAAGGTATGGTTTCTCTTAAAGTGGACAACCTAACTTACCGAACAGCCCCCGAAACCCTCAGGCGCGTATTCGAGAAATATGGCCGAGTCGGTGATGTTTACATCCCGCGGGATCGCTACACCAAAGAAAGTCGAGGTTTCGCATTTGTACGTTTCTTCGACAAACGGGACGCCGAGGATGCGATGGACGCCATGGACGGCGCGCTCCTGGATGGCCGGGAGTTGCGGGTTCAGATGGCTCGATATGGCAGACCGCCCGATTCTCACTACGGTGGGGGGCGACGTGGGCCGCCAAAGAAGCATAGCGGACGGCGGAGCAGAGGGTATAGTATGGACGTTTACGGTAATTAGGTGGATATTTTAGTAATGAAAGAATTCTTTCATCCCTTGGCCATACGTTAGCTGCACGAGGTGTTGCCTGCAATTAGCTAGTGGCAAACCTGTTAAACATAAATGGCAGGACCTTTGGAAGCACTTCCACCGTTTTATTTTTATTACCTAAGACCATT] [+] EMBL CA590968 [TATTACGTACCGTCAGTTTAAAGGTGCTGATTTGCGGGCCTAACGATTAATCGCCGCCATGAATTACGGTAGGCCTCCGCCAGATGTTGAAGGTATGGTTTCTCTTAAAGTGGACAACCTAACTTACCGAACAGCCCCCGAAACCCTCAGGCGCGTATTCGAGAAATATGGCCGAGTCGGTGATGTTTACATCCCGCGGGATCGCTACACCAAAGAAAGTCGAGGTTTCGCATTTGTACGTTTCTTCGACAAACGGGACGCCGAGGATGCGATGGACGCCATGGACGGCGCGCTCCTGGATGGCCGGGAGTTGCGGGTTCAGATGGCTCGATATGGCAGACCGCCCGATTCTCACTACGGTGGGGGGCGACGTGGGCCGCCAAAGAAGCATAGCGGACGGCGGAGCAGAGGGTATAGTATGGACGTTTACGGTAATTAGGTGGATATTTTAGTAATGAAAGAATTCTTTCATCCCTTGGCCATACGTTAGCTGCACGAGGTGTTGCCTGCAATTAGCTAGTGGCAAACCTGTTAAACATAAATGGCAGGACCTTTGGAAGCACTTCCACCGTTTTATTTTTATTACCTAAGACCATT] consensusID : consensus_1351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [CTCCGCCAGATGTTGAAGGTATGGTTTCTCTTAAAGTGGACAACCTAACTTACCGAACAGCCCCCGAAACCCTCAGGCGCGTATTCGAGAAATATGGCCGAGTCGGTGATGTTTACATCCCGCGGGATCTTTTCTCCAAAGAAAGTCGAGGTTTCGCATTTGTACGTTTCTTCGACAAACGGGACGCCGAGGATGCGATGGACGCCATGGACGGCGCGCTCCTGGATGGCCGGGAGTTGCGGGTTCAGATGGCTCGATATGGCAGACCGCCCGATTCTCACTACGGTGGGGGGCGACGTGGGCCGCCAAAGAATCATAGCGGACGGCGGAGCAGAAGCCATTCTCCTAGCCCAAGAAACAAACGACGCAGCAGGTCCCGCAGCAGGAGCCGTTCTCGTTCCCGAAGCAGGTCCCGCTACAGTAAATCCAGATCCAGATCTCGATCCCGATCCTACTCACCAGCTCGCCGCAGCAAAATCAGGTCCCGGTCCTAC] [+] EMBL BU807313 [CTCCGCCAGATGTTGAAGGTATGGTTTCTCTTAAAGTGGACAACCTAACTTACCGAACAGCCCCCGAAACCCTCAGGCGCGTATTCGAGAAATATGGCCGAGTCGGTGATGTTTACATCCCGCGGGATCTTTTCTCCAAAGAAAGTCGAGGTTTCGCATTTGTACGTTTCTTCGACAAACGGGACGCCGAGGATGCGATGGACGCCATGGACGGCGCGCTCCTGGATGGCCGGGAGTTGCGGGTTCAGATGGCTCGATATGGCAGACCGCCCGATTCTCACTACGGTGGGGGGCGACGTGGGCCGCCAAAGAATCATAGCGGACGGCGGAGCAGAAGCCATTCTCCTAGCCCAAGAAACAAACGACGCAGCAGGTCCCGCAGCAGGAGCCGTTCTCGTTCCCGAAGCAGGTCCCGCTACAGTAAATCCAGATCCAGATCTCGATCCCGATCCTACTCACCAGCTCGCCGCAGCAAAATCAGGTCCCGGTCCTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1351#0 TATTACGTACCGTCAGTTTAAAGGTGCTGATTTGCGGGCCTAACGATTAATCGCCGCCAT 60 consensus_1351#1 ------------------------------------------------------------ consensus_1351#0 GAATTACGGTAGGCCTCCGCCAGATGTTGAAGGTATGGTTTCTCTTAAAGTGGACAACCT 120 consensus_1351#1 --------------CTCCGCCAGATGTTGAAGGTATGGTTTCTCTTAAAGTGGACAACCT 46 ********************************************** consensus_1351#0 AACTTACCGAACAGCCCCCGAAACCCTCAGGCGCGTATTCGAGAAATATGGCCGAGTCGG 180 consensus_1351#1 AACTTACCGAACAGCCCCCGAAACCCTCAGGCGCGTATTCGAGAAATATGGCCGAGTCGG 106 ************************************************************ consensus_1351#0 TGATGTTTACATCCCGCGGGATCGCTACACCAAAGAAAGTCGAGGTTTCGCATTTGTACG 240 consensus_1351#1 TGATGTTTACATCCCGCGGGATCTTTTCTCCAAAGAAAGTCGAGGTTTCGCATTTGTACG 166 *********************** * * ******************************* consensus_1351#0 TTTCTTCGACAAACGGGACGCCGAGGATGCGATGGACGCCATGGACGGCGCGCTCCTGGA 300 consensus_1351#1 TTTCTTCGACAAACGGGACGCCGAGGATGCGATGGACGCCATGGACGGCGCGCTCCTGGA 226 ************************************************************ consensus_1351#0 TGGCCGGGAGTTGCGGGTTCAGATGGCTCGATATGGCAGACCGCCCGATTCTCACTACGG 360 consensus_1351#1 TGGCCGGGAGTTGCGGGTTCAGATGGCTCGATATGGCAGACCGCCCGATTCTCACTACGG 286 ************************************************************ consensus_1351#0 TGGGGGGCGACGTGGGCCGCCAAAGAAGCATAGCGGACGGCGGAGCAGAGGGTATAGTAT 420 consensus_1351#1 TGGGGGGCGACGTGGGCCGCCAAAGAATCATAGCGGACGGCGGAGCAGAAGCCATTCTCC 346 *************************** ********************* * ** * consensus_1351#0 GGACGTTTACGGTAATTAG-GTGGATATTTTAGTAATGAAAGAATTCTTTCATCCCTTGG 479 consensus_1351#1 TAGCCCAAGAAACAAACGACGCAGCAGGTCCCGCAGCAGGAGCCGT-TCTCGTTCCCGAA 405 * ** * * * * * ** * * ** * ** consensus_1351#0 CCATACGTTAGCTGCACGAGGTGTTGCCTGCAATTAGCTAGTGGCAAACCTGTTAAACAT 539 consensus_1351#1 GCAGGTCCC-GCTACAGTAAATCCAGATCCAGATC--TCGATCCCGATCCTACTCACCA- 461 ** *** ** * * * ** * * * *** * * ** consensus_1351#0 AAATGGCAGGACCTTTGGAAGCACTTCCACCGTTTTATTTTTATTACCTAAGACCATT 597 consensus_1351#1 -GCTCGCCGCAGC---AAAATCAGGTCC-CGGTCCTAC-------------------- 494 * ** * * * ** ** *** * ** ** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |