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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence
[ATGTTGGCGGGTGAACAATAATGGGCTGTAATGTGAAACCGAAGGGAATACAACAGAACCGCAGTGAAGGGGAGACCAAAGGCGCGTGCCGCTCATTCGTGCCACTACGCAGAGTGCAGGGGGATGACAAATTTGCACCCAAAAGGAGAGTGGTACTTGATTCCTACTTCCTGGAACACCTGGCGAGGGATGCCGATGTCGCACAGGAGTTGTGTCTTCGACGGAATCCTTTGGACTGGCCCGGAACCTCCAGGTGACGTTCTCCATAGCTTTTGGAGCAGTGCTGAGGAGAGTTCACGTTCTCCATAGACCTGGGGTCACCTTTGGGGACTGCAACTGGGGCACTACCAACATGAGCAGTGACTGGCTGCAGTTGGTGAAATACCTGACATCACAACAATTGAACATGATGACATCACATGGAGACCACCTCAGAGGTGTTTGCACGTGGCCACGCCCTCACGCTCTCCTTGTAGACATACTGCAGGTTACCCTGGATACTCCAGTGACTCAATGGCTTGCAGTCAAACTGACAACCGACCTGCAAACGCTCCCGCTGCAAGAGATTTCCTGAACAAAGTGCACAAAGAGAGGAATAAATCTGTCTCAGCGATACAGTGATTGCTGGTA]
[+] EMBL CA589814 [ATGTTGGCGGGTGAACAATAATGGGCTGTAATGTGAAACCGAAGGGAATACAACAGAACCGCAGTGAAGGGGAGACCAAAGGCGCGTGCCGCTCATTCGTGCCACTACGCAGAGTGCAGGGGGATGACAAATTTGCACCCAAAAGGAGAGTGGTACTTGATTCCTACTTCCTGGAACACCTGGCGAGGGATGCCGATGTCGCACAGGAGTTGTGTCTTCGACGGAATCCTTTGGACTGGCCCGGAACCTCCAGGTGACGTTCTCCATAGCTTTTGGAGCAGTGCTGAGGAGAGTTCACGTTCTCCATAGACCTGGGGTCACCTTTGGGGACTGCAACTGGGGCACTACCAACATGAGCAGTGACTGGCTGCAGTTGGTGAAATACCTGACATCACAACAATTGAACATGATGACATCACATGGAGACCACCTCAGAGGTGTTTGCACGTGGCCACGCCCTCACGCTCTCCTTGTAGACATACTGCAGGTTACCCTGGATACTCCAGTGACTCAATGGCTTGCAGTCAAACTGACAACCGACCTGCAAACGCTCCCGCTGCAAGAGATTTCCTGAACAAAGTGCACAAAGAGAGGAATAAATCTGTCTCAGCGATACAGTGATTGCTGGTA]
consensusID : consensus_1380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence
[CTCTGTGCTTCATCTGCCCATTCTTCACACCATTCTTTTTTGGTGTTGCTTGATTTGCCCCTCTGCTACTGGATGACCAGGAGTTGTGTCTTCGACGGAATCCTTTGGACTGGCCCGGAACCTCCAGGTGACGTTCTCCATAGCTTTTGGAGCAGTGCTGAGGAGAGTTCACGTTCTCCATAGACCTGGGGTCACCTTTGGGGACTGCAACTGGGGCACTACCAACATGAGCAGGTGCAGAAGTGCTGCCATTTCTGATATCCAAAATCTTAAGTTCTTTAATGTCCATCGCACTGAATGCGACCTCAGGGACGGGGCACTTGATTCCATTATGGAATGGATGTCTTAGGGAGATTGTTTGACTGGACTGGTCCACAAAAGCCACCTCTCCTTGATAGACTCCCAGTGTTGGCCCACAGTTAATAGACACCAAACTACCCAACCAATCCGAAGCCATGACGTCTAGTGCTAAATCCAAAACGTGAAAGCTGTACCTGATCAAGGACTCTGGGTCAACGTTCTGCCTTTGGACGATCAATACGAATCGATCTCTTGAAGGCAAAAATAAACGGGCTTGTGATTATTTTAGCTTCT]
[-] EMBL BU807610 [CTCTGTGCTTCATCTGCCCATTCTTCACACCATTCTTTTTTGGTGTTGCTTGATTTGCCCCTCTGCTACTGGATGACCAGGAGTTGTGTCTTCGACGGAATCCTTTGGACTGGCCCGGAACCTCCAGGTGACGTTCTCCATAGCTTTTGGAGCAGTGCTGAGGAGAGTTCACGTTCTCCATAGACCTGGGGTCACCTTTGGGGACTGCAACTGGGGCACTACCAACATGAGCAGGTGCAGAAGTGCTGCCATTTCTGATATCCAAAATCTTAAGTTCTTTAATGTCCATCGCACTGAATGCGACCTCAGGGACGGGGCACTTGATTCCATTATGGAATGGATGTCTTAGGGAGATTGTTTGACTGGACTGGTCCACAAAAGCCACCTCTCCTTGATAGACTCCCAGTGTTGGCCCACAGTTAATAGACACCAAACTACCCAACCAATCCGAAGCCATGACGTCTAGTGCTAAATCCAAAACGTGAAAGCTGTACCTGATCAAGGACTCTGGGTCAACGTTCTGCCTTTGGACGATCAATACGAATCGATCTCTTGAAGGCAAAAATAAACGGGCTTGTGATTATTTTAGCTTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1380#0 ATGTTGGCGGGTGAACAATAATGGGCTGTAATGTGAAACCGAAGGGAATACAACAGAACC 60
consensus_1380#1 ------------------------------------------------------------
consensus_1380#0 GCAGTGAAGGGGAGACCAAAGGCGCGTGCCGCTCATTCGTGCCACTACGCAGAGTGCAGG 120
consensus_1380#1 -----------------------------------------------------------C 1
consensus_1380#0 GGGATGACAAATTTGCACCCAAAAGGAGAGTGGTACTTGATTCCTACTTCCTGGAACACC 180
consensus_1380#1 TCTGTGCTTCATCTG--CCCATTCTTCACACCATTCTTTTTTGGTGTTGCTTGATTTGCC 59
** ** ** **** * *** ** * * * ** **
consensus_1380#0 TGGCGAGGGATGCCGATGTCGCACAGGAGTTGTGTCTTCGACGGAATCCTTTGGACTGGC 240
consensus_1380#1 CCTCTGCTACTG--GATGAC---CAGGAGTTGTGTCTTCGACGGAATCCTTTGGACTGGC 114
* ** **** * *************************************
consensus_1380#0 CCGGAACCTCCAGGTGACGTTCTCCATAGCTTTTGGAGCAGTGCTGAGGAGAGTTCACGT 300
consensus_1380#1 CCGGAACCTCCAGGTGACGTTCTCCATAGCTTTTGGAGCAGTGCTGAGGAGAGTTCACGT 174
************************************************************
consensus_1380#0 TCTCCATAGACCTGGGGTCACCTTTGGGGACTGCAACTGGGGCACTACCAACATGAGCAG 360
consensus_1380#1 TCTCCATAGACCTGGGGTCACCTTTGGGGACTGCAACTGGGGCACTACCAACATGAGCAG 234
************************************************************
consensus_1380#0 TGACTGGCTGCAGTTGGTGAAATACCTGACATCACAACAATTGAACATGATGA----CAT 416
consensus_1380#1 GTGCAG-----AAGTGCTGCCATTTCTGATATCCAAAATCTTAAGTTCTTTAATGTCCAT 289
* * * ** ** ** **** *** ** ** * * * ***
consensus_1380#0 CACA-TGGAGACCACCTCAGAGGTGTTTGCACGTGGCCACGCCCTC--ACGCTCTCCTTG 473
consensus_1380#1 CGCACTGAATGCGACCTCAGGGACGGG-GCACTTGATTCCATTATGGAATGGATGTCTTA 348
* ** ** * * ******* * * **** ** * * * * ***
consensus_1380#0 TAGACAT------ACTGCA---GGTTACCCTGGATACTCC------AGTGACTC-----A 513
consensus_1380#1 GGGAGATTGTTTGACTGGACTGGTCCACAAAAGCCACCTCTCCTTGATAGACTCCCAGTG 408
** ** **** * * ** * ** * * *****
consensus_1380#0 ATGGCTTGCAGTCAAACTGACAACCGACCTGCAAACGCTCCCGCTGCAAGAGATTTCCTG 573
consensus_1380#1 TTGGCCCACAGTTAA-TAGACACCAAACTACCCAACCAATCCGAAGCCAT-GACGTCTAG 466
**** **** ** **** * ** * *** *** ** * ** ** *
consensus_1380#0 AACAAAGTGCACAAAGAGAGGAATAAATCTGTCTCAGCGATACAGTGATTGCTGGTA--- 630
consensus_1380#1 TGCTAAATCCAAAACGTGAAAGCTGTACCTGA-TCAAGGACTCTG-GGTCAACGTTCTGC 524
* ** * ** ** * ** * * *** *** ** * * * * * *
consensus_1380#0 ------------------------------------------------------------
consensus_1380#1 CTTTGGACGATCAATACGAATCGATCTCTTGAAGGCAAAAATAAACGGGCTTGTGATTAT 584
consensus_1380#0 ----------
consensus_1380#1 TTTAGCTTCT 594
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |