These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1382#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence [AAAGCCCCAGAAAAACCCACCAAAAAAGTCCCAACCTCTGTTTGCGTGAAAGCTGAAAGCTGCTATCATGTTGAAGTGAAGCTACCAGCTGATGCGGAGACGGCCGGCGTGGACCTGATCGCGTTCGGCGCCGTTGCGAAAATCCTCAAAGACGACAAGTTCGAGATTCTAAGGACGTGGCAGGAAGGAGATCGGACGTGGTTGGTTTGGAGCCAGGATTTCAGGCTCAGAGTCGACAGGGACTTATTGATCCGTTTTAGTCAGGCTAAGATCAGGCTCCAGATATGGAACAGCAAAGGCCAGCTGTCTGGCCTGGCCCGCCTCGAGAGGCTGAAAACCCTGAGGCTGCCACAGGGGCCGTGTGAAGATGCAGCAGACCTGTGTGGTGGCGTCAGGACTCTGGTTCAGAACTTGAGAACCACGTGTATGAGAAAGCCTGAGAAATTCACCCTGGTGGCATCTGAAGCAGGAGTTGGCCACGCCCCCCCTGAAGCTTTCGACCTGAAGGAGGTGATGAAGAGCGGCGCTGTGTCAGCTGAAATCAACCCTGTGTG] [+] EMBL BU807636 [AAAGCCCCAGAAAAACCCACCAAAAAAGTCCCAACCTCTGTTTGCGTGAAAGCTGAAAGCTGCTATCATGTTGAAGTGAAGCTACCAGCTGATGCGGAGACGGCCGGCGTGGACCTGATCGCGTTCGGCGCCGTTGCGAAAATCCTCAAAGACGACAAGTTCGAGATTCTAAGGACGTGGCAGGAAGGAGATCGGACGTGGTTGGTTTGGAGCCAGGATTTCAGGCTCAGAGTCGACAGGGACTTATTGATCCGTTTTAGTCAGGCTAAGATCAGGCTCCAGATATGGAACAGCAAAGGCCAGCTGTCTGGCCTGGCCCGCCTCGAGAGGCTGAAAACCCTGAGGCTGCCACAGGGGCCGTGTGAAGATGCAGCAGACCTGTGTGGTGGCGTCAGGACTCTGGTTCAGAACTTGAGAACCACGTGTATGAGAAAGCCTGAGAAATTCACCCTGGTGGCATCTGAAGCAGGAGTTGGCCACGCCCCCCCTGAAGCTTTCGACCTGAAGGAGGTGATGAAGAGCGGCGCTGTGTCAGCTGAAATCAACCCTGTGTG] consensusID : consensus_1382#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence [CCCTGAAGCTTTCGACCTGAAGGAGGTGATGAAGAGCGGCGCTGTGTCAGCTGAAATCAACCCTGTGTGTCTGCTGGCAGGTGAGACCTCACTGACCCAGTCCTTCAGCCTTTACTCCAGCGGTGTGTTTGAGGTCATGTGCGACATTTCTCTGGACCGGCCGTTAATATCTGACCAACTGAAGGCTGAACTCAACCCACTGGCCATCACCATTCTGTCCGCTAAATCACTGCCCCCGTCACATGACCTGCAGGACACGTGTGCACCTGTGTATTGCCAGTACAAGTTCCTTAACTCCAACGTGCACCGCACAAACTATCATAAACACGCCACCAATATTCACTTTGAGGACACAAATGTGGTCCTGACTGGCCTGATGAACCAGGACGAGCTCAGAGAGTTCCTGTCCGGTCCCCCTCTGGAGATAGAGGTTCACGATCGGGACAGAAAAGGTCCAGAACCAGCTGGAGCGTTTGGACCTGACGGCAGTCATTTAAAGCCCAAACCGACAGGAACCAGCTCCTTTGGGGTTGCACACCTGAGTCTCTGTGA] [+] EMBL CA590650 [CCCTGAAGCTTTCGACCTGAAGGAGGTGATGAAGAGCGGCGCTGTGTCAGCTGAAATCAACCCTGTGTGTCTGCTGGCAGGTGAGACCTCACTGACCCAGTCCTTCAGCCTTTACTCCAGCGGTGTGTTTGAGGTCATGTGCGACATTTCTCTGGACCGGCCGTTAATATCTGACCAACTGAAGGCTGAACTCAACCCACTGGCCATCACCATTCTGTCCGCTAAATCACTGCCCCCGTCACATGACCTGCAGGACACGTGTGCACCTGTGTATTGCCAGTACAAGTTCCTTAACTCCAACGTGCACCGCACAAACTATCATAAACACGCCACCAATATTCACTTTGAGGACACAAATGTGGTCCTGACTGGCCTGATGAACCAGGACGAGCTCAGAGAGTTCCTGTCCGGTCCCCCTCTGGAGATAGAGGTTCACGATCGGGACAGAAAAGGTCCAGAACCAGCTGGAGCGTTTGGACCTGACGGCAGTCATTTAAAGCCCAAACCGACAGGAACCAGCTCCTTTGGGGTTGCACACCTGAGTCTCTGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1382#0 AAAGCCCCAGAAAAACCCACC--AAAAAAGTCCCAACCTCTGTTTGCGTGAAAGCTGAAA 58 consensus_1382#1 ----CCCTGAAGCTTTCGACCTGAAGGAGGTGATGAAGAGCGGCGCTGTGTCAGCTGAAA 56 *** * * *** ** * ** * * *** ******** consensus_1382#0 GCTGCTAT-CATGTTGAAGTGAAGCTACCAGCTGAT--GCGGAGACGGCCGGCGTGGACC 115 consensus_1382#1 TCAACCCTGTGTGTCTGCTGGCAGGTGAGACCTCACTGACCCAGTCCTTCAGCCTTTACT 116 * * * *** * ** * * ** * * ** * * ** * ** consensus_1382#0 TGATCG---CGTTCGGCGCCGT-TGCGAAAATCCTCAAAGACGACA---AGTTCGAGATT 168 consensus_1382#1 CCAGCGGTGTGTTTGAGGTCATGTGCGACATTTCTCTGGACCGGCCGTTAATATCTGACC 176 * ** *** * * * * ***** * * *** ** * * * ** consensus_1382#0 CTAAGGACGTGGCAGGAAGGAGATCGGACGTGGTTGGTTTG------GAGCCAGGATTTC 222 consensus_1382#1 AACTGAAGGCTGAACTCAACCCACTGGCCATCACCATTCTGTCCGCTAAATCACTGCCCC 236 * * * * * * * ** * * * ** * ** * consensus_1382#0 AGGCTCAGAGTCGACAGGG-ACTTATTGATCCGTTT-TAGTCAGGCTAAGATCA--GGCT 278 consensus_1382#1 CGTCACATGACCTGCAGGACACGTGTGCACCTGTGTATTGCCAGTACAAGTTCCTTAACT 296 * * ** * **** ** * * * * ** * * * *** *** ** ** consensus_1382#0 CCAGATATGGAACAGCAAAGGCCAGCTGTCTGGCCTGGCCCGCCTCGAGAGGCTGAAAAC 338 consensus_1382#1 CCA-ACGTGCACC-GCACAAACTATC--ATAAACACGCCACCAATATTCACTTTGAGGAC 352 *** * ** * * *** * * * * * * * * * * *** ** consensus_1382#0 CCTGAGGCTGCCACAGG-GGCCGTGTGAAGATGCAGCAGACCTGTGTGGTGGCGTCAGGA 397 consensus_1382#1 ACAAATGTGGTCCTGACTGGCCTGATGAACCAGGACGAGCTCAGAGAGTTCCTGTCCGGT 412 * * * * * **** **** * * ** * * * * * *** ** consensus_1382#0 CTCTGGTTCAGAACTTGAGAACCACGTGTATGAGAAAGCCTGAGAAATTCACCCTGGTGG 457 consensus_1382#1 CCCCC-TCTGGAGATAGAGGTTCACGATCGGGACAGAAAAGGTCCAGAACCAGCTGG-AG 470 * * * ** * *** **** ** * * * * * **** * consensus_1382#0 CATCTGAAGCAGGAGTTGGCCACGCCCCCCCTGAAGCTTTCGACCTGAAGGAGGTGATGA 517 consensus_1382#1 CGTTTGGACCTGACGGCAGTCATTTAAAGCCCAAA----CCGACAGGAACCAGCTCCTTT 526 * * ** * * * * * ** ** ** **** *** ** * * consensus_1382#0 AGAGCGGCGCTGTGTCAGCTGAAATCAACCCTGTGTG 554 consensus_1382#1 GGGGTTGCAC-ACCTGAGTCTCTGTGA---------- 552 * * ** * * ** * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |