Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 1382 cluster # 1382       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1382#0 length = 554 sequences # 1  
consensus_1382#1 length = 552 sequences # 1  

consensusID : consensus_1382#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 554
fasta sequence
                              [AAAGCCCCAGAAAAACCCACCAAAAAAGTCCCAACCTCTGTTTGCGTGAAAGCTGAAAGCTGCTATCATGTTGAAGTGAAGCTACCAGCTGATGCGGAGACGGCCGGCGTGGACCTGATCGCGTTCGGCGCCGTTGCGAAAATCCTCAAAGACGACAAGTTCGAGATTCTAAGGACGTGGCAGGAAGGAGATCGGACGTGGTTGGTTTGGAGCCAGGATTTCAGGCTCAGAGTCGACAGGGACTTATTGATCCGTTTTAGTCAGGCTAAGATCAGGCTCCAGATATGGAACAGCAAAGGCCAGCTGTCTGGCCTGGCCCGCCTCGAGAGGCTGAAAACCCTGAGGCTGCCACAGGGGCCGTGTGAAGATGCAGCAGACCTGTGTGGTGGCGTCAGGACTCTGGTTCAGAACTTGAGAACCACGTGTATGAGAAAGCCTGAGAAATTCACCCTGGTGGCATCTGAAGCAGGAGTTGGCCACGCCCCCCCTGAAGCTTTCGACCTGAAGGAGGTGATGAAGAGCGGCGCTGTGTCAGCTGAAATCAACCCTGTGTG]

[+] EMBL BU807636             [AAAGCCCCAGAAAAACCCACCAAAAAAGTCCCAACCTCTGTTTGCGTGAAAGCTGAAAGCTGCTATCATGTTGAAGTGAAGCTACCAGCTGATGCGGAGACGGCCGGCGTGGACCTGATCGCGTTCGGCGCCGTTGCGAAAATCCTCAAAGACGACAAGTTCGAGATTCTAAGGACGTGGCAGGAAGGAGATCGGACGTGGTTGGTTTGGAGCCAGGATTTCAGGCTCAGAGTCGACAGGGACTTATTGATCCGTTTTAGTCAGGCTAAGATCAGGCTCCAGATATGGAACAGCAAAGGCCAGCTGTCTGGCCTGGCCCGCCTCGAGAGGCTGAAAACCCTGAGGCTGCCACAGGGGCCGTGTGAAGATGCAGCAGACCTGTGTGGTGGCGTCAGGACTCTGGTTCAGAACTTGAGAACCACGTGTATGAGAAAGCCTGAGAAATTCACCCTGGTGGCATCTGAAGCAGGAGTTGGCCACGCCCCCCCTGAAGCTTTCGACCTGAAGGAGGTGATGAAGAGCGGCGCTGTGTCAGCTGAAATCAACCCTGTGTG]


>consensus_1382#0 AAAGCCCCAGAAAAACCCACCAAAAAAGTCCCAACCTCTGTTTGCGTGAAAGCTGAAAGC TGCTATCATGTTGAAGTGAAGCTACCAGCTGATGCGGAGACGGCCGGCGTGGACCTGATC GCGTTCGGCGCCGTTGCGAAAATCCTCAAAGACGACAAGTTCGAGATTCTAAGGACGTGG CAGGAAGGAGATCGGACGTGGTTGGTTTGGAGCCAGGATTTCAGGCTCAGAGTCGACAGG GACTTATTGATCCGTTTTAGTCAGGCTAAGATCAGGCTCCAGATATGGAACAGCAAAGGC CAGCTGTCTGGCCTGGCCCGCCTCGAGAGGCTGAAAACCCTGAGGCTGCCACAGGGGCCG TGTGAAGATGCAGCAGACCTGTGTGGTGGCGTCAGGACTCTGGTTCAGAACTTGAGAACC ACGTGTATGAGAAAGCCTGAGAAATTCACCCTGGTGGCATCTGAAGCAGGAGTTGGCCAC GCCCCCCCTGAAGCTTTCGACCTGAAGGAGGTGATGAAGAGCGGCGCTGTGTCAGCTGAA ATCAACCCTGTGTG



consensusID : consensus_1382#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 552
fasta sequence
                              [CCCTGAAGCTTTCGACCTGAAGGAGGTGATGAAGAGCGGCGCTGTGTCAGCTGAAATCAACCCTGTGTGTCTGCTGGCAGGTGAGACCTCACTGACCCAGTCCTTCAGCCTTTACTCCAGCGGTGTGTTTGAGGTCATGTGCGACATTTCTCTGGACCGGCCGTTAATATCTGACCAACTGAAGGCTGAACTCAACCCACTGGCCATCACCATTCTGTCCGCTAAATCACTGCCCCCGTCACATGACCTGCAGGACACGTGTGCACCTGTGTATTGCCAGTACAAGTTCCTTAACTCCAACGTGCACCGCACAAACTATCATAAACACGCCACCAATATTCACTTTGAGGACACAAATGTGGTCCTGACTGGCCTGATGAACCAGGACGAGCTCAGAGAGTTCCTGTCCGGTCCCCCTCTGGAGATAGAGGTTCACGATCGGGACAGAAAAGGTCCAGAACCAGCTGGAGCGTTTGGACCTGACGGCAGTCATTTAAAGCCCAAACCGACAGGAACCAGCTCCTTTGGGGTTGCACACCTGAGTCTCTGTGA]

[+] EMBL CA590650             [CCCTGAAGCTTTCGACCTGAAGGAGGTGATGAAGAGCGGCGCTGTGTCAGCTGAAATCAACCCTGTGTGTCTGCTGGCAGGTGAGACCTCACTGACCCAGTCCTTCAGCCTTTACTCCAGCGGTGTGTTTGAGGTCATGTGCGACATTTCTCTGGACCGGCCGTTAATATCTGACCAACTGAAGGCTGAACTCAACCCACTGGCCATCACCATTCTGTCCGCTAAATCACTGCCCCCGTCACATGACCTGCAGGACACGTGTGCACCTGTGTATTGCCAGTACAAGTTCCTTAACTCCAACGTGCACCGCACAAACTATCATAAACACGCCACCAATATTCACTTTGAGGACACAAATGTGGTCCTGACTGGCCTGATGAACCAGGACGAGCTCAGAGAGTTCCTGTCCGGTCCCCCTCTGGAGATAGAGGTTCACGATCGGGACAGAAAAGGTCCAGAACCAGCTGGAGCGTTTGGACCTGACGGCAGTCATTTAAAGCCCAAACCGACAGGAACCAGCTCCTTTGGGGTTGCACACCTGAGTCTCTGTGA]


>consensus_1382#1 CCCTGAAGCTTTCGACCTGAAGGAGGTGATGAAGAGCGGCGCTGTGTCAGCTGAAATCAA CCCTGTGTGTCTGCTGGCAGGTGAGACCTCACTGACCCAGTCCTTCAGCCTTTACTCCAG CGGTGTGTTTGAGGTCATGTGCGACATTTCTCTGGACCGGCCGTTAATATCTGACCAACT GAAGGCTGAACTCAACCCACTGGCCATCACCATTCTGTCCGCTAAATCACTGCCCCCGTC ACATGACCTGCAGGACACGTGTGCACCTGTGTATTGCCAGTACAAGTTCCTTAACTCCAA CGTGCACCGCACAAACTATCATAAACACGCCACCAATATTCACTTTGAGGACACAAATGT GGTCCTGACTGGCCTGATGAACCAGGACGAGCTCAGAGAGTTCCTGTCCGGTCCCCCTCT GGAGATAGAGGTTCACGATCGGGACAGAAAAGGTCCAGAACCAGCTGGAGCGTTTGGACC TGACGGCAGTCATTTAAAGCCCAAACCGACAGGAACCAGCTCCTTTGGGGTTGCACACCT GAGTCTCTGTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1382#0      AAAGCCCCAGAAAAACCCACC--AAAAAAGTCCCAACCTCTGTTTGCGTGAAAGCTGAAA 58
consensus_1382#1      ----CCCTGAAGCTTTCGACCTGAAGGAGGTGATGAAGAGCGGCGCTGTGTCAGCTGAAA 56
                          ***   *     * ***  **  * **    *     *     ***  ********

consensus_1382#0      GCTGCTAT-CATGTTGAAGTGAAGCTACCAGCTGAT--GCGGAGACGGCCGGCGTGGACC 115
consensus_1382#1      TCAACCCTGTGTGTCTGCTGGCAGGTGAGACCTCACTGACCCAGTCCTTCAGCCTTTACT 116
                       *  *  *   ***      * ** *   * ** *    *  ** *   * ** *  ** 

consensus_1382#0      TGATCG---CGTTCGGCGCCGT-TGCGAAAATCCTCAAAGACGACA---AGTTCGAGATT 168
consensus_1382#1      CCAGCGGTGTGTTTGAGGTCATGTGCGACATTTCTCTGGACCGGCCGTTAATATCTGACC 176
                        * **    *** *  * * * ***** * * ***     ** *    * *    **  

consensus_1382#0      CTAAGGACGTGGCAGGAAGGAGATCGGACGTGGTTGGTTTG------GAGCCAGGATTTC 222
consensus_1382#1      AACTGAAGGCTGAACTCAACCCACTGGCCATCACCATTCTGTCCGCTAAATCACTGCCCC 236
                          * * *  * *   *    *  ** * *      * **       *  **      *

consensus_1382#0      AGGCTCAGAGTCGACAGGG-ACTTATTGATCCGTTT-TAGTCAGGCTAAGATCA--GGCT 278
consensus_1382#1      CGTCACATGACCTGCAGGACACGTGTGCACCTGTGTATTGCCAGTACAAGTTCCTTAACT 296
                       * * **    *  ****  ** * *  * * ** * * * ***   *** **     **

consensus_1382#0      CCAGATATGGAACAGCAAAGGCCAGCTGTCTGGCCTGGCCCGCCTCGAGAGGCTGAAAAC 338
consensus_1382#1      CCA-ACGTGCACC-GCACAAACTATC--ATAAACACGCCACCAATATTCACTTTGAGGAC 352
                      *** *  ** * * *** *  * * *       *  * * *   *    *   ***  **

consensus_1382#0      CCTGAGGCTGCCACAGG-GGCCGTGTGAAGATGCAGCAGACCTGTGTGGTGGCGTCAGGA 397
consensus_1382#1      ACAAATGTGGTCCTGACTGGCCTGATGAACCAGGACGAGCTCAGAGAGTTCCTGTCCGGT 412
                       *  * *  * *      ****   ****   * *  **  * * * * *   *** ** 

consensus_1382#0      CTCTGGTTCAGAACTTGAGAACCACGTGTATGAGAAAGCCTGAGAAATTCACCCTGGTGG 457
consensus_1382#1      CCCCC-TCTGGAGATAGAGGTTCACGATCGGGACAGAAAAGGTCCAGAACCAGCTGG-AG 470
                      * *   *   **  * ***   ****     ** * *    *   *   *   ****  *

consensus_1382#0      CATCTGAAGCAGGAGTTGGCCACGCCCCCCCTGAAGCTTTCGACCTGAAGGAGGTGATGA 517
consensus_1382#1      CGTTTGGACCTGACGGCAGTCATTTAAAGCCCAAA----CCGACAGGAACCAGCTCCTTT 526
                      * * ** * * *  *   * **       **  **     ****  ***  ** *  *  

consensus_1382#0      AGAGCGGCGCTGTGTCAGCTGAAATCAACCCTGTGTG 554
consensus_1382#1      GGGGTTGCAC-ACCTGAGTCTCTGTGA---------- 552
                       * *  ** *    * **      * *          




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)