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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1399#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[TAGCTTTAGCTTTAGCTTTGTGACAAAGCACAGGCACATTTGATGGTAGCTGGAGTCCTTATCAGTGTTGATCATGCGGGAGGCCGTGATTAATGTGAGCTCTAGAACAGATAACAGCTGATAGGAGTGGGCGAAGGAGCACGTAGAGAGCACACGGGCCCGTGCATGTGTGTGTGTTCTACTCTCTCACTCACTCACTCACTCTCTCACTCACTTTCTACCGCTTGTTCCTCCACTGAGGGTCGCGGGGGGGCTGGAGCCTATCCCAGCACAATGGGCGGAGGCAGGGTACACCCTGGACTGGACGCCAGTCAATCGCAGGGCTAACACATATAGACAAACAACCATTCTCTCTCACACTCACACCTACGGGCAATTAAGAGTTTCCAATTAGCCTAATCCCCAATCATGCATGTCTTTGGACTGTGGGAGGAAGCCGGAGTACCGGAGAGAACCCAAGCAGGCACAGGGAGAACATGCAAACTCCACACAGAAAGTCCCCAGCCTCAGTCCCAACTGGGGATCGAACCCCGGGCCTTCTTGCTGTGAGGCCATCACACCACCGTGCCGCCCTGTGTGTGTTCTAGTTCCAAAATACTCTTTTTACTAGCAAAGTGAGGA]
[+] EMBL CA590356 [TAGCTTTAGCTTTAGCTTTGTGACAAAGCACAGGCACATTTGATGGTAGCTGGAGTCCTTATCAGTGTTGATCATGCGGGAGGCCGTGATTAATGTGAGCTCTAGAACAGATAACAGCTGATAGGAGTGGGCGAAGGAGCACGTAGAGAGCACACGGGCCCGTGCATGTGTGTGTGTTCTACTCTCTCACTCACTCACTCACTCTCTCACTCACTTTCTACCGCTTGTTCCTCCACTGAGGGTCGCGGGGGGGCTGGAGCCTATCCCAGCACAATGGGCGGAGGCAGGGTACACCCTGGACTGGACGCCAGTCAATCGCAGGGCTAACACATATAGACAAACAACCATTCTCTCTCACACTCACACCTACGGGCAATTAAGAGTTTCCAATTAGCCTAATCCCCAATCATGCATGTCTTTGGACTGTGGGAGGAAGCCGGAGTACCGGAGAGAACCCAAGCAGGCACAGGGAGAACATGCAAACTCCACACAGAAAGTCCCCAGCCTCAGTCCCAACTGGGGATCGAACCCCGGGCCTTCTTGCTGTGAGGCCATCACACCACCGTGCCGCCCTGTGTGTGTTCTAGTTCCAAAATACTCTTTTTACTAGCAAAGTGAGGA]
consensusID : consensus_1399#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence
[CATCAGCACGGTGGCACTCGATCTTTCCATCCATTACCTTAATTAAGAATTCAGACATGGTTTTGGGGGGGGGGTGTTAAAATTGGGTTTAGGTTAGAAATGTGAGGATGTCTGTATATGTGTAACACAAATATCGCCAGTTTTGTGAAATGATTAAAAATGTAAAATTTGCAGCCTGAGCCTGAATAAGGGGATCAAAGGTGAACATCCTTCTTTCACTCTCTCACTCACTCATTTGCTACCGCTTGTTCCTCCACTGAGGGTCGCGGGGGGACTGGAGCCTATCCCAGAACAATGGGCGGAGGCAGGGTACACCCTGGACTGGACGCCAGTCAATTGCAGGGCTAACACTCACTCACTCTCACTCATTTTCTACCGCTTGTTCCTCCACTGAGGGTCGCGGGGGGGCTGGAGCCTATCCCAGCTCAATGGGCGGAGGCAGGGTACACCCTGGATTGGTCGCCAGTCAATCGCAGGGCTAACACATACAGACGCACAACCATTCACTCTCACACTCACACCTACGGGCAAT]
[-] EMBL BU807763 [CATCAGCACGGTGGCACTCGATCTTTCCATCCATTACCTTAATTAAGAATTCAGACATGGTTTTGGGGGGGGGGTGTTAAAATTGGGTTTAGGTTAGAAATGTGAGGATGTCTGTATATGTGTAACACAAATATCGCCAGTTTTGTGAAATGATTAAAAATGTAAAATTTGCAGCCTGAGCCTGAATAAGGGGATCAAAGGTGAACATCCTTCTTTCACTCTCTCACTCACTCATTTGCTACCGCTTGTTCCTCCACTGAGGGTCGCGGGGGGACTGGAGCCTATCCCAGAACAATGGGCGGAGGCAGGGTACACCCTGGACTGGACGCCAGTCAATTGCAGGGCTAACACTCACTCACTCTCACTCATTTTCTACCGCTTGTTCCTCCACTGAGGGTCGCGGGGGGGCTGGAGCCTATCCCAGCTCAATGGGCGGAGGCAGGGTACACCCTGGATTGGTCGCCAGTCAATCGCAGGGCTAACACATACAGACGCACAACCATTCACTCTCACACTCACACCTACGGGCAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1399#0 ---------------------TAGCTTTAGCTTTAGCTTTGTGACAAAGCACAGGCACAT 39
consensus_1399#1 CATCAGCACGGTGGCACTCGATCTTTCCATCCATTACCTTAATTAAGAATTCAGACATGG 60
* * * * * * ** * * *** **
consensus_1399#0 TTGATGGTAGCTGGAGTCCTTATCAGTGTTGATCATGCGGGAGGCCGTGATTAATGTGAG 99
consensus_1399#1 TTTTGGGGGGGGGGTGTTAAAATTGGGTTTAG--GTTAGAAATGTGAGGATGTCTGTATA 118
** ** * ** ** ** * ** * * * * *** ***
consensus_1399#0 C-TCTAGAACAGATAACAGCTGATAGGAGTGGGCGAAGGAGCACGTAGAGAGCACA---C 155
consensus_1399#1 TGTGTAACACAAATATCGCCAGTTTTGTG-AAATGATTAAAAATGTAAAATTTGCAGCCT 177
* ** *** *** * * * * * * ** * * *** * **
consensus_1399#0 GGGCCCGTGCATGTGTGTGTGTTCTACTCTCTCACTCACTCACTCACTCTCTCACTCACT 215
consensus_1399#1 GAGCCTGAATAAGGGGATCAAAGGTGAACATCC-TTCTTTCACTCTCTCACTCACTCATT 236
* *** * * * * * * * * ** ****** *** ******** *
consensus_1399#0 TTCTACCGCTTGTTCCTCCACTGAGGGTCGCGGGGGGGCTGGAGCCTATCCCAGCACAAT 275
consensus_1399#1 TGCTACCGCTTGTTCCTCCACTGAGGGTCGCGGGGGGACTGGAGCCTATCCCAGAACAAT 296
* *********************************** **************** *****
consensus_1399#0 GGGCGGAGGCAGGGTACACCCTGGACTGGACGCCAGTCAATCGCAGGGCTAACACATATA 335
consensus_1399#1 GGGCGGAGGCAGGGTACACCCTGGACTGGACGCCAGTCAATTGCAGGGCTAACACTCACT 356
***************************************** ************* *
consensus_1399#0 GACAAACAACCATTCTCTCTCACACTCACACCTACGGGCAATTAAGAGTTTCCAATTAGC 395
consensus_1399#1 CACTCTCACTCATTTTCTACCG--CTTGTTCCTCC-----ACTGAGGGTCGCGGGGGGGC 409
** ** **** *** * ** *** * * * ** ** * **
consensus_1399#0 CTAATCCCCAATCATGCATGTCTTTGGACTGTGGGAGGAAGCCGGAGTACCGGAGAGAAC 455
consensus_1399#1 TGGAGCCT--ATCC--CAGCTCAATGGGCGGAGGCAGGGTAC----ACCCTGGATTGGTC 461
* ** *** ** ** *** * * ** *** * * *** * *
consensus_1399#0 -CCAAGCAGGCACAGGG--AGAACATGCAAACTCCACACAGAAAGTCCCCAGCCTCAGTC 512
consensus_1399#1 GCCAGTCAATCGCAGGGCTAACACATACAGACGCACAACCATTCACTCTCACACTCA-CA 520
*** ** * ***** * **** ** ** * ** * ** ****
consensus_1399#0 CCAACTGGGGATCGAACCCCGGGCCTTCTTGCTGTGAGGCCATCACACCACCGTGCCGCC 572
consensus_1399#1 CCTACGGGCAAT------------------------------------------------ 532
** ** ** **
consensus_1399#0 CTGTGTGTGTTCTAGTTCCAAAATACTCTTTTTACTAGCAAAGTGAGGA 621
consensus_1399#1 -------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |