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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1420#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 690 fasta sequence
[ACCCGGACTGGTCGGAACCGACAGATATCCACAAATGGGCAATTGTAACCAGTAGGCTCCTCTTTAAATCCGTCCATCCGCACTTTCGACCACATCAGACGCCGTAACAGCGAGGCGATCTTTAAGTCAACCATCTCTTAACTTTGAGAGACACCTGAAGTCAGATAAAATGGCAGCAATTCCCTCAAGTGGCTCCCTCGTGGCCACCCACGACTATTACAGACGACGCCTTGGTTCTGCCTCCAGCAGCAGCTCCTGTGGCAGCGCAGAATACACAGGCGAGGTCATTCCTCACCACCCAGGGCTTCCAAGGCAAGATTCTGGACACTGGTGGACTTCATTTTTCTTCGCCAAACAGAACCAGCCCGGCCTGCAAAATGGATCCGACCTCCAAAAGAACGGAACCTACACAGTGGCCAACGGCCAGGTGACCTGCATCGCCAAGGAGATGGTTCTGAAGCGGCAACTCAGCGAAACCAGCGACAGCGGGAAGCCCGAACAACAGCAAACAACCCCCGTGCCCCCCCCATCCTAGACCTGACCCCCCCACCCCACCCGAGGTCCCCTTTCGCTATCGTCTTGCCGTCCGTCACAGTCGGAGATGACGAGGGCGCCCGTTACCCGTAGCGTGGAGTTTTCCTGTTTGTATAGTTCCTTTTATATCGACCAGAGGTTTTTCATTATGTTCTT]
[+] EMBL BU805173 [ACCCGGACTGGTCGGAACCGACAGATATCCACAAATGGGCAATTGTAACCAGTAGGCTCCTCTTTAAATCCGTCCATCCGCACTTTCGACCACATCAGACGCCGTAACAGCGAGGCGATCTTTAAGTCAACCATCTCTTAACTTTGAGAGACACCTGAAGTCAGATAAAATGGCAGCAATTCCCTCAAGTGGCTCCCTCGTGGCCACCCACGACTATTACAGACGACGCCTTGGTTCTGCCTCCAGCAGCAGCTCCTGTGGCAGCGCAGAATACACAGGCGAGGTCATTCCTCACCACCCAGGGCTTCCAAGGCAAGATTCTGGTCACTGGTGGACTTCATTTTTCTTCGCCAAACAGAACCAGCCCGGCCTGCAAAATGGATCCGACCTCCAAAAGAACGGAACCTACACAGTGGCCAACGGCCAGGTGACCTGCATCGCCAAGGAGATGGTTCTGAAGCGGCAACTCAGCGAAAC ]
[+] EMBL FR0055353 [ GCAGAATACACAGGCGAGGTCATTCCTCACCACCCAGGGCTTCCAAGGCAAGATTCTGGACACTGGTGGACTTCATTTTTCTTCGCCAAACAGAACCAGCCCGGCCTGCAAAATGGATCCGACCTCCAAAAGAACGGAACCTACACAGTGGCCAACGGCCAGGTGACCTGCATCGCCAAGGAGATGGTTCTGAAGCGGCAACTCAGCGAAACCAGCGACAGCGGGAAGCCCGAACAACAGCAAACAACCCCCGTGCCCCCCCCATCCTAGACCTGACCCCCCCACCCCACCCGAGGTCCCCTTTCGCTATCGTCTTGCCGTCCGTCACAGTCGGAGATGACGAGGGCGCCCGTTACCCGTAGCGTGGAGTTTTCCTGTTTGTATAGTTCCTTTTATATCGACCAGAGGTTTTTCATTATGTTCTT]
consensusID : consensus_1420#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence
[GAAAAAGGAACAACGAAAGGGGGACAATGAAAAAAAAAAAACAGAACCCCTGGGGGGGGCCAGTTACCAACTTTTTGCCCCCTTAACCCGGGCTGCAAAATGGATCCGACCTCCAAAAGAACGGAACCTACACAGTGGCCAATGGCCAGGTGACCTGCATCGCCAAGGAGATGGTTCTGAAGCGGCAACTCAGCGAAACCAGCGACAGCGGGAAGCCCGAACAACAGCAAACAACCCCCGTGCCCCCCCCATCCTAGACCTGACCCCCCCCACCCCACCCGAGGTCCCCTTTCGCTATCGTCTTGCCGTCCGTCACAGTCGGAGATCACGAGGGCGCCCGTTACCCGTACCGTGGAGTTTTCCTGGCT]
[+] EMBL FR0056125 [GAAAAAGGAACAACGAAAGGGGGACAATGAAAAAAAAAAAACAGAACCCCTGGGGGGGGCCAGTTACCAACTTTTTGCCCCCTTAACCCGGGCTGCAAAATGGATCCGACCTCCAAAAGAACGGAACCTACACAGTGGCCAATGGCCAGGTGACCTGCATCGCCAAGGAGATGGTTCTGAAGCGGCAACTCAGCGAAACCAGCGACAGCGGGAAGCCCGAACAACAGCAAACAACCCCCGTGCCCCCCCCATCCTAGACCTGACCCCCCCCACCCCACCCGAGGTCCCCTTTCGCTATCGTCTTGCCGTCCGTCACAGTCGGAGATCACGAGGGCGCCCGTTACCCGTACCGTGGAGTTTTCCTGGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1420#0 ACCCGGACTGGTCGGAACCGACAGATATCCACAAATGGGCAATTGTAACCAGTAGGCTCC 60
consensus_1420#1 ------------------------------------------------------------
consensus_1420#0 TCTTTAAATCCGTCCATCCGCACTTTCGACCACATCAGACGCCGTAACAGCGAGGCGATC 120
consensus_1420#1 ------------------------------------------------------------
consensus_1420#0 TTTAAGTCAACCATCTCTTAACTTTGAGAGACACCTGAAGTCAGATAAAATGGCAGCAAT 180
consensus_1420#1 ------------------------------------------------------------
consensus_1420#0 TCCCTCAAGTGGCTCCCTCGTGGCCACCCACGACTATTACAGACGACGCCTTGGTTCTGC 240
consensus_1420#1 ------------------------------------------------------------
consensus_1420#0 CTCCAGCAGCAGCTCCTGTGGCAGCGCAGAATACACAGGCGAGGTCATTCCTCACCACCC 300
consensus_1420#1 -------------------------------------GAAAAAGGAA--CAACGAAAGGG 21
* * * * * * *
consensus_1420#0 AGGGCTTCCAAGGCAAGATTCTGGACAC-TGGTGGACTTCATTTTTCTTCGCCAAACAGA 359
consensus_1420#1 GGACAATGAAAAAAAAAAAACAGAACCCCTGGGGGGGGCCAGTTACCAACTTTTTGCCCC 81
* * ** ** * * * ** * *** ** ** ** * * *
consensus_1420#0 ACCAGCCCGGCCTGCAAAATGGATCCGACCTCCAAAAGAACGGAACCTACACAGTGGCCA 419
consensus_1420#1 CTTAACCCGGGCTGCAAAATGGATCCGACCTCCAAAAGAACGGAACCTACACAGTGGCCA 141
* ***** *************************************************
consensus_1420#0 ACGGCCAGGTGACCTGCATCGCCAAGGAGATGGTTCTGAAGCGGCAACTCAGCGAAACCA 479
consensus_1420#1 ATGGCCAGGTGACCTGCATCGCCAAGGAGATGGTTCTGAAGCGGCAACTCAGCGAAACCA 201
* **********************************************************
consensus_1420#0 GCGACAGCGGGAAGCCCGAACAACAGCAAACAACCCCCGTGCCCCCCCCATCCTAGACCT 539
consensus_1420#1 GCGACAGCGGGAAGCCCGAACAACAGCAAACAACCCCCGTGCCCCCCCCATCCTAGACCT 261
************************************************************
consensus_1420#0 GACCCCCCC-ACCCCACCCGAGGTCCCCTTTCGCTATCGTCTTGCCGTCCGTCACAGTCG 598
consensus_1420#1 GACCCCCCCCACCCCACCCGAGGTCCCCTTTCGCTATCGTCTTGCCGTCCGTCACAGTCG 321
********* **************************************************
consensus_1420#0 GAGATGACGAGGGCGCCCGTTACCCGTAGCGTGGAGTTTTCCTGTTTGTATAGTTCCTTT 658
consensus_1420#1 GAGATCACGAGGGCGCCCGTTACCCGTACCGTGGAGTTTTCCTGGCT------------- 368
***** ********************** *************** *
consensus_1420#0 TATATCGACCAGAGGTTTTTCATTATGTTCTT 690
consensus_1420#1 --------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |