These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 621 fasta sequence [AGCTCCAGGCGTGACTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTCCTCCTCCTGCTGCGGGGCCTGCTGCTGCTCCTCCTGCTGCTCCTCCTGCAAGAAACGGCCTCATCCCTAAAGATGAAGAAGAAGAAGAACTCCGCCCAGCAGCCAAAGTGACCCCCAAAGCCCCGGAGCCCAAACTCCCCGTGTTTAAAGCCAACCAGGAACCAGACGCACTCACCCCTCAGAGCAGAGGCGAGCCCAGAGAGGGGAGTCGGCCATCCAGCAAAGCAGAAGCAAAGACCTTCCCCAGGAGGCAACCCAGCCCGGCTCCGCCCCCAAAACCCGCGCCCCCAAAACCTGCATCTAAGCCTGAACCCAAACCAGCGCCACATCCAGTGGAGGCCAAAGCTGCTGTGGAAAAACCCAAAGCAGAACCCAAACAAAAGGTGGTGATTTCAGGTCCCAGCAGCGAACGCGGCCCAGAACTGGAGGAGCTGGAGGGTCCCAACACCATCATGATCTGCATGGTCATCCTGCTCAACATCGGCCTGGCCATCCTCTTCGTGCACATTTTGTCATGAGACGTCGTCCTGGTCCTCAGGTAACAAAGACTCCGGGAGCAGAG] [+] EMBL BU805194 [AGCTCCAGGCGTGACTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTCCTCCTCCTGCTGCTCCTCCTGCTGCTGCTCCTCCTGCTGCTCCTCCTGCAAGAAACGGCCTCATCCCTAAAGATGAAGAAGAAGAAGAACTCCGCCCAGCAGCCAAAGTGACCCCCAAAGCCCCGGAGCCCAAACTCCCCGTGTTTAAAGCCAACCAGGAACCAGACGCACTCACCCCTCAGATCAGAGGCGAGCCCAGAGAGGGGAGTCGGCCATCCAGCAAAGCAGAAGCAAAGACCTTCCCCAGGAGGCAACCCAGCCCGGCTCCGCCCCCAAAACCCGCGCCCCCAAAACCTGCATCTAAGCCTGAACCCAAACCAGCGCCACATCCAGTGGAGGCCAAAGCTGCTGTGGAAAAACCCAAAGCAGAACCCAAACAAAAGGTGGTGATTTCAGGTCCCAGCAGCGAACGCGGCCCAGAACTGGAGGAGCTGGAGGGTCCCAACACCATCATGATCTGCATGGTCATCCTGCTCAACATCGGCCTGGCCATCCTCTTCGTGCACATTTTGTCATGAGACGTCGTCCTGGTCCTCAGGTAACAA ] [+] EMBL BU805099 [ GGGGCTTTTTGCTGCTCCTCCTGCTGCTCCTCCTGCAAGAAACGGCCTCATCCCTAAAGATGAAGAAGAAGAAGAACTCCGCCCAGCAGCCAAAGTGACCCCCAAAGCCCCGGAGCCCAAACTCCCCGTGTTTAAAGCCAACCAGGAACCAGACGCACTCACCCCTCAGAGCAGAGGCGAGCCCAGAGAGGGGAGTCGGCCATCCAGCAAAGCAGAAGCAAAGACCTTCCCCAGGAGGCAACCCAGCCCGGCTCCGCCCCCAAAACCCGCGCCCCCAAAACCTGCATCTAAGCCTGAACCCAAACCAGCGCCACATCCAGTGGAGGCCAAAGCTGCTGTGGAAAAACCCAAAGCAGAACCCAAACAAAAGGTGGTGATTTCAGGTCCCAGCAGCGAACGCGGCCCAGAACTGGAGGAGCTGGAGGGTCCCAACACCATCATGATCTGCATGGTCATCCTGCTCAACATCGGCCTGGCCATCCTCTTCGTGCACATTTTGTCATGAGACGTCGTCCTGGTCCTCAGGTAACAAAGACTCCGGGAGCAGAG] consensusID : consensus_1432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [GGGCAACAGTAAACCCAACAGCAGGTCCAGCGGTCGCCCCTCCACTCCCTCAACCTCTGCTCCCACCTCGGCCGGCCCGGAGGGGGGAGGAGAGCCCAACGGTCGCGGACCCTCCCGTACCCCGAGCCAGCATAGTCAGAGCAGCAAGATGGAACCAGGCTCCGACCTGGAGATCAAGCCCCTGCAGAAGTTTGACTCGGAGACAAGAGCTCCAGGCGTGATTCTTGCTGCTCCTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTCCTCCTCCTGCTGCTCCTCCTGCTGCTGCTCCTCCTGCTGCTCCTCCTGCAAGAAACGGCCTCATCCCTAAAGATGAAGAAAAAGAAGAACTCCGCCCAGCAGCC] [+] EMBL BU805450 [GGGCAACAGTAAACCCAACAGCAGGTCCAGCGGTCGCCCCTCCACTCCCTCAACCTCTGCTCCCACCTCGGCCGGCCCGGAGGGGGGAGGAGAGCCCAACGGTCGCGGACCCTCCCGTACCCCGAGCCAGCATAGTCAGAGCAGCAAGATGGAACCAGGCTCCGACCTGGAGATCAAGCCCCTGCAGAAGTTTGACTCGGAGACAAGAGCTCCAGGCGTGATTCTTGCTGCTCCTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTCCTCCTCCTGCTGCTCCTCCTGCTGCTGCTCCTCCTGCTGCTCCTCCTGCAAGAAACGGCCTCATCCCTAAAGATGAAGAAAAAGAAGAACTCCGCCCAGCAGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1432#0 AGCTCCAGGCGTGACTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTCC 60 consensus_1432#1 --------------------------------------------------GGGCAACAGT 10 * * consensus_1432#0 TCCTCCTGCTGCGGGGCCTGCTGCTGCTCCTCCTGCTGCTCCTCCTGCAAGAAACGGCCT 120 consensus_1432#1 AAACCCAACAGCAGGTCCAGCGGTCGCCCCTCCA-------CTCCCTCAACCTCTGCTCC 63 ** * ** ** ** ** * ** ***** **** *** * * consensus_1432#0 CATCCCTAAAGATGAAGAAGAAGAAGAACTCCGCCCAGCAGCCAAAGTGACCCCCAAAGC 180 consensus_1432#1 CACCTCGGCCGGCCCGGAGGGGGGAGGAGA--GCCCAACGGTCGCGG--ACCCTC----- 114 ** * * * ** * * ** * ***** * * * * **** * consensus_1432#0 CCCGGAGCCCAAACTCCCCGTGTTTAAAGCCAACCAGGAACCAGACGCACTCACCCCTCA 240 consensus_1432#1 -CCGTACCCCGAGC-CAGCATAGTCAGAGC--------AGCAAGATGGAACCAGGCTCCG 164 *** * *** * * * * * * * *** * * *** * * ** * * consensus_1432#0 GAGCAGAGGCGAGCCCAGAGAGGGGAGTCGGCCATCCAGCAAAGCAGAAGCAAAGACCTT 300 consensus_1432#1 ACCTGGAGATCAAGCCCCTGCAGAAGTTTGA----CTCGGAGACAAGAGCTCCAGGCGTG 220 *** * ** * * * * * * * * *** ** * * consensus_1432#0 CCCCAGGAGGCAACCCAGCCCGGCTCCGCCCCCAAAACCCGCGCCCCCAAAACCTGCATC 360 consensus_1432#1 ATTCTTGCTGCT-CCTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTCC 279 * * ** ** * ***** ** * ** * * * ***** * consensus_1432#0 TAAGCCTGAACCCAAACCAGCGCCACATCCAGTGGAGGCCAAAGCTGCTGTGGAAAAACC 420 consensus_1432#1 TCCTCCTGCTGCTCCTCCTGCTGCTGCTCCTCCTGCTGCTCCTCCTGCAAGAAACGGCCT 339 * **** * ** ** * *** * ** **** * * consensus_1432#0 CAAAGCAGAACCCAAACAAAAGGTGGTGATTTCAGGTCCCAGCAGCGAACGCGGCCCAGA 480 consensus_1432#1 CATCCCTAAAGATGAAGAAAAAGAAG-AACTCCG---CCCAGCAGCC------------- 382 ** * ** ** **** * * * * * ********* consensus_1432#0 ACTGGAGGAGCTGGAGGGTCCCAACACCATCATGATCTGCATGGTCATCCTGCTCAACAT 540 consensus_1432#1 ------------------------------------------------------------ consensus_1432#0 CGGCCTGGCCATCCTCTTCGTGCACATTTTGTCATGAGACGTCGTCCTGGTCCTCAGGTA 600 consensus_1432#1 ------------------------------------------------------------ consensus_1432#0 ACAAAGACTCCGGGAGCAGAG 621 consensus_1432#1 --------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |