These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1486#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 730 fasta sequence [TAGAAATACACATGGTGCATCAATGGGCAAAGGCTGGATATAGCTCAGATATCTACCCGAGGTTACAAACTAGCTACCACAGAGTTCCACATCATCATTGAAATCCCCATAGGTGCCCCTGATGGTTATTTTAAGAGTCACGCCCCAGATTACCAATACCACGTCGTGTACACGGTTGAGCCCATGCTCGAGGTTCTATGGACTGCAAGCAACGGCCGCGAAGACACCAGATACAAGGTTCTGTTTCCAATTACCACACCACGTGATTGCTCGACCACCCCGCCACCAAGACGACACCTCTACCGGAGACCGGATGTTTGCTGTTCTACTGGGAGACTTTCTTCAAGATGTTGAGCTGAGGAACATCACTTTCACAACTGGGGTTCTTACTGTGCAGGAGTGCAACGCCAGAGGCTACATTGTCCAGGAACACACCACCCTTGATAACTCCAAGGGCTTTTCCTTGCATGTGCCCTTTGACACTGACGTTGTCCTCAAAAGGAATCCTGAACTGTTGGTCACCAAGTATGTTCTTCCTGTGAGCTTTGGTCTGGTAGTTGTGCCTGAAGAGGTGCCTTTCAGTCACACATTAGAGCTCCATGCTAATCTAGAGGATGTTGTGCTGCCCTCCCTTACCGGCATCTGTGATGAGAGCAATTTTTACCTCTCTGTGAAATATGGCAGTCAAGGGAGCAATTTCCAGACCTGGCTTGGTCATCAACACTTGACA] [+] EMBL CA846375 [TAGAAATACACATGGTGCATCAATGGGCAAAGGCTGGATATAGCTCAGATATCTACCCGAGGTTACAAACTAGCTACCACAGAGTTCCACATCATCATTGAAATCCCCATAGGTGCCCCTGATGGTTATTTTAAGAGTCACGCCCCAGATTACCAATACCACGTCGTGTACACGGTTGAGCCCATGCTCGAGGTTCTATGGACTGCAAGTAACGGCCGCGAAGACACCAGATACAAGGTTCTGTTTCCAATTACCACACCAC TGATTGCTCGACCACCCCGCCACCAAGACGACACCTCTACCGGAGACCGGATGTTTGCTGTTCTACTGGGAGACTTTCTTCAAGATGTTGAGCTGAGGAACATCACTTTCACAACTGGGGTTCTTACTGTGCAGGAGTGCAACGCCAGAGGCTACATTGTCCAGGAACACACCACCCTTGATAACTCCAAGGGCTTTTCCTTGCATGTGCCCTTTGACACTGACGTTGTCCTCAAAAGGAATCCTGAACTGTTGGTCACCAAGTATGTTCTTCCTGTGAGCTTTGGTCTGGTAGTTGTGCCTGAAGAGGTGCCTTTCAGTCACACATTAGAGCTCCATGCTAATCTAGAGGATGTTGTGCTGCCCTCCCTTACCGGCATCTGTGATGAGAGCAATTTTTACCTCTCTGTGAAATATGGCAGTCAAGGGAGCAATTTCCAGACCTGGCTTGGTCATCAACACTTGACA] [+] EMBL FR0057078 [ TAGGTGCCCCTGATGGTTATTTTAAGAGTCACGCCCCAGATTACCACTACCACGTCGTGTACACAGTTGTGCCCATGTTCGACGTTCTATGGACTGCATGCAACGGCCACGACGACACCACATACAAGGTTCTGTTTCCAATTATCACACCACGTGATTGCTCGACCACCCCGCCATCAAGACTACACCTCTACCGGCGACCGGATGTTTGCTGTTCTACTGGGAGACTTTCTTCAAGATGTTGACCTGAGGAATATCACT ] consensusID : consensus_1486#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence [CAATTTCCAGACCTGGCTTGGTCATCAACACTTGACAGAGGAGGTGTTAGAACTTTACAACTTCCAGGAAAATGGCACCCACTTCAGCCTCATCGTGCCATACAATGCCAAGGACACAGCATTCGAGATAATTACATCAAACTCCATCAGAGCCAGGGCTGACCTGCTTCTGTATGATCACATCAACAACCGGGCACTGGCTAATCTCTTCCTGGCCTGCACCTTCCCCTTGATAACAACTAATTGTTACTCCAATGGAACAATGACTGCTGTGGCTGTGAAAGTGGAATCGCTGAACAACCTCACCCCAGGTTCCCTGACCCTGAAGGACACTTCATGCAAACCAGTGTTCAGTGACGACCGCTTCGCCTATTTCTCATTCAGCGTTGATTCCTGTGGTACCACAAGAACATTCTTCAGC] [+] EMBL CA846464 [CAATTTCCAGACCTGGCTTGGTCATCAACACTTGACAGAGGAGGTGTTAGAACTTTACAACTTCCAGGAAAATGGCACCCACTTCAGCCTCATCGTGCCATACAATGCCAAGGACACAGCATTCGAGATAATTACATCAAACTCCATCAGAGCCAGGGCTGACCTGCTTCTGTATGATCACATCAACAACCGGGCACTGGCTAATCTCTTCCTGGCCTGCACCTTCCCCTTGATAACAACTAATTGTTACTCCAATGGAACAATGACTGCTGTGGCTGTGAAAGTGGAATCGCTGAACAACCTCACCCCAGGTTCCCTGACCCTGAAGGACACTTCATGCAAACCAGTGTTCAGTGACGACCGCTTCGCCTATTTCTCATTCAGCGTTGATTCCTGTGGTACCACAAGAACATTCTTCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1486#0 TAGAAATACACATGGTGCATCAATGGGCAAAGGCTGGATATAGCTCAGATATCTACCCGA 60 consensus_1486#1 ---------------------------CAATTTCCAGACCTGGCTTGGTCATCAACACTT 33 *** * ** * *** * *** ** * consensus_1486#0 GGTTACAAACTAGCTACCACAGAGTTCCACATCATCATTGAAATCCCCATAGGTGCCCCT 120 consensus_1486#1 G---ACAGAGGAGGTGTTA--GAACTTTACAACTTCCAGGAAAAT------GGCACCC-- 80 * *** * ** * * ** * *** * ** **** ** *** consensus_1486#0 GATGGTTATTTTAAGAGTCACGCCCCAGATTACCAATACCACGTCGTGTACACGGTTGAG 180 consensus_1486#1 -------ACTTCA--------GCCTCATCGTGCCA-TACAATGCCAAGGACACAGC---- 120 * ** * *** ** * *** *** * * * * **** * consensus_1486#0 CCCATGCTCGAGGTTCTATGGACTGCAAGCAACGGCCGCGAAGACACCAGATACAAGGTT 240 consensus_1486#1 -----ATTCGAGAT------AATTACATCAAACTCCATCAGAGCCAGGGCTGACCTGCTT 169 ***** * * * ** *** * * ** ** ** * ** consensus_1486#0 CTGTTTCCAATTACCACACCACGTGATTGCTCGACCACCCCGCCACCAAGACGACACCTC 300 consensus_1486#1 CTGTAT--GATCACATCAACAACCGGGCACTGGCTAATCT--CTTCCTGGCCTGCACCTT 225 **** * ** ** ** ** * ** * * * * ** * * ***** consensus_1486#0 TACCG-GAGACCGGATGTTTGCTGTTCTACTGGGAGACTTTCTTCAAGATGTTGAGCTGA 359 consensus_1486#1 CCCCTTGATAACAACTAATTGTTACTCCAATGGAACAATGACT----GCTGT--GGCTGT 279 ** ** * * * *** * ** * *** * * * ** * *** **** consensus_1486#0 GGAACATCACTTTCACAACTGGGGTTCTTACTGTGCAGGAGTGCAACGCCAGAGGCTACA 419 consensus_1486#1 GAAAGTGGAATCGCTGAACAA----CCTCACCCCA-GGTTCCCTGACCCTGAAGGACACT 334 * ** * * * *** ** ** * ** * *** ** consensus_1486#0 TTGTCCAGGAACACACCACCCTTGATAACTCCAAGGGCTTTTCCTTGCATGTGCCCTTTG 479 consensus_1486#1 TCATGCA--AACCAGTGTTCAGTGACGACCGCTTCGCCTATTTCTCAT---TCAGCGTTG 389 * * ** *** * *** ** * * ** ** ** * * *** consensus_1486#0 ACACTGACGTTGTCCTCAAAAGGAATCCTGAACTGTTGGTCACCAAGTATGTTCTTCCTG 539 consensus_1486#1 ATTCCTGTGGTA-CCACAAGAACATTCTTCAGC--------------------------- 421 * * * * ** *** * * ** * * * consensus_1486#0 TGAGCTTTGGTCTGGTAGTTGTGCCTGAAGAGGTGCCTTTCAGTCACACATTAGAGCTCC 599 consensus_1486#1 ------------------------------------------------------------ consensus_1486#0 ATGCTAATCTAGAGGATGTTGTGCTGCCCTCCCTTACCGGCATCTGTGATGAGAGCAATT 659 consensus_1486#1 ------------------------------------------------------------ consensus_1486#0 TTTACCTCTCTGTGAAATATGGCAGTCAAGGGAGCAATTTCCAGACCTGGCTTGGTCATC 719 consensus_1486#1 ------------------------------------------------------------ consensus_1486#0 AACACTTGACA 730 consensus_1486#1 ----------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |