These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 795 fasta sequence [ACCACTAGAGAGGTACTTCCTAACCCAGGGCTGGACCTGCGAACCTCAAATCACGATGATTTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAGTACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAGCGTGTGGCGATTCCCATACTTGTGCCAAACTCATGGCGGAGGTGCCTTCTTGATTCCCTACCTGATCCTGCTGGTGCTGGAAGGAATGCCTCTCCTGCTGCTGGAGTTTGCCATTGGCCAACGTCTCAGGAAAGGCAGCGTGGGGGTGTGGAGGACCATCAGCCCTTACCTGACCGGCATCGGTATCGCCTCCATGTTGGTGTCACTTTTGGTCGGACTGTACTACAACACATTAATAGCCTGGATCCTGTGGTATCTCTTTAATTCCTTTCAAGACCCACTACCATGGAATCACTGTCCTCTAAATGACAATAGGACAGGGTTTGTGTCAGAGTGTCAACAGAGCACCACGGTGGATTACTTCTTTTATAGAGTGACACTAAAGAGTACGACCTCCATAGAGGACTCTGGAGGGATCAACTGGCCGATAGTTGCCTGCTTGTTTGCCGCCTGGTCACTCGTTGCTATCTGCTGCATGAGAGGCATCAGCACCTCAGGCAAGGCTGTGTACGTCACCGCTATCCTGCCTTACATAGTGCTCGGCATCTTTCTGATCCGTGGGCTGACACTGAAAGGTGCAATGAGTGGGATCGAATTCCTCTTCGTGCCAGATGTGACTGAGTTAAGCACCCCA] [+] EMBL CA588117 [ACCACTATACAGGTACTTCCTAACCCAGGGCTGGACCTGCGAATC CCTTTCACGATGATTTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAGTACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAACGTGTGGCGATTCCCATACTTGTGCCAAACTCATGGCGGAGGTGCCTTCTTGATTCCCTACCTGATCCTGCTGGTGCTGGAAGGAATGCCTCTCCTGCTGCTGGAGTTTGCCATTGGCCAACGTCTCAGGAAAGGCAGCGTGGGGGTGTGGAGGACCATCAGCCCTTACCTGACCGGCATCGGTATCGCCTCCATGTTGGTGTCACTTTTGGTCGGACTGTACTACAACACATTAATAGCCTGGATCCTGTGGTATCTCTTTAATTCCTTTCAAGACCCACTACCATGGAATCACTGTCCTCTAAATGACAATAGGACAGGGTTTGTGTCAGAGTGTCAACAGAGCACCACGGTGGATTACTTCTTTTATAGAGTGACACTAAAGAGTACGACCTCCATAGAGGACTCTGGAGGGATCAACTGGCCGATAGTTGCCTGCTTGTTTGCCGCCTGGTCACTCGTTGCTATCTGCTGCATGAGAGGCATCAGCACCTCAGGCAAGGCTGTGTACGTCACCGCTATCCTGCCTTACATAGTGCTCGGCATCTTTCTGATCCGTGGGCTGACACTGAAAGGTGCAATGAGTGGGATCGAATTCCTCTTCGTGCCAGATGTGACTGAGTTAAGCACCCCA] [+] EMBL CA591488 [ AGAGTGGTACTTCCTAACCCAGGGCTGGACCTGCGAACCTCAAATCACGATGATTTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAGTACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAGCGTGTGGCGATTCCCATACTTGTGCCAAACTCATGGCGGAGGTGCCTTCTTGATTCCCTACCTGATTCTGCTGGTGCTGGAAGGAATGCCTCTCCTGCTGCTGGAGTTTGCCATTGGCCAACGTCTCAGGAAAGGCAGCGTGGGGGTGTGGAGGACCATCAGCCCTTACCTGACCGGCATCGGTATCGCCTCCATGTTGGTGTCACTTTTGGTCGGACTGTACTACAACACATTAATAGCCTGGATCCTGTGGTATCTCTTTAATTCCTTTCAAGACCCACTACCATGGAATCACTGTCCTCTAAATGACAATAGGACAGGGTTTGTGTCAGAGTGTCAACAGAGCACCACGGTGGATTACTTCTTTTATAGAGTGACACTAAAGAGTACGACCTCCATAGAGGACTCTGGAGGGATCAACTGGCCGATAGTTGCCTGCTTGTTTGCCGCCTGGTCACTCGTTGCTATCTGCTGCATGAGAGGCATCAGC ] consensusID : consensus_1529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [CCAGGGCTGGACCTGCGAATCCCAAATCACGATGGTTTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAGTACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAACGTGTGGCGATTCCCATACTTGTGCCAAACTCATGGCGGAGGTAAGGTCGGTTGACTTTTAAAGGCATCCCTATAGCAACTTTTAACATTCATTTGTTAAATTTTTGATTATTTCTTGTAGCAACAACTGTGTCAAAGATGCAATAATCCTGTCTGTGGTCACCGGCTTCACCTCAGTCTACGCTGCCATGGTCACGTACTCCATCATTGGTTTCAGAGCCACTGAAAAATATGACAACTGCATCGACAATAACATCGTGAGATTACTAAACGCCTTCAGCCTCCCTGAAGACAGCATCACTGCGGACAACTATGAAACAGCCTTCAAGCATCTGAACAGCTCCTCTCATGACATCGTGCTTGGACTGGACATAGAAAAGTACAACATGCAGAGGCTTCTCAGTGAGGGAGTG] [+] EMBL CA589946 [CCAGGGCTGGACCTGCGAATCCCAAATCACGATGGTTTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAGTACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAACGTGTGGCGATTCCCATACTTGTGCCAAACTCATGGCGGAGGTAAGGTCGGTTGACTTTTAAAGGCATCCCTATAGCAACTTTTAACATTCATTTGTTAAATTTTTGATTATTTCTTGTAGCAACAACTGTGTCAAAGATGCAATAATCCTGTCTGTGGTCACCGGCTTCACCTCAGTCTACGCTGCCATGGTCACGTACTCCATCATTGGTTTCAGAGCCACTGAAAAATATGACAACTGCATCGACAATAACATCGTGAGATTACTAAACGCCTTCAGCCTCCCTGAAGACAGCATCACTGCGGACAACTATGAAACAGCCTTCAAGCATCTGAACAGCTCCTCTCATGACATCGTGCTTGGACTGGACATAGAAAAGTACAACATGCAGAGGCTTCTCAGTGAGGGAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1529#0 ACCACTAGAGAGGTACTTCCTAACCCAGGGCTGGACCTGCGAACCTCAAATCACGATGAT 60 consensus_1529#1 ------------------------CCAGGGCTGGACCTGCGAATCCCAAATCACGATGGT 36 ******************* * ************ * consensus_1529#0 TTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAG 120 consensus_1529#1 TTGGACAGGATGGAGAAAGAAGATGCGGGCAACAGACCGAAGTGGGACAACAAAATTCAG 96 ************************************************************ consensus_1529#0 TACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAGCGTGTGGCGATTCCCATAC 180 consensus_1529#1 TACATCTTAACCTGCATTGGCTTCTGCATTGGGCTCGGAAACGTGTGGCGATTCCCATAC 156 **************************************** ******************* consensus_1529#0 TTGTGCCAAACTCATGGCGGAGGTGCCTTC--TTGATTCCCTACCTGATCCTGCTGGTGC 238 consensus_1529#1 TTGTGCCAAACTCATGGCGGAGGTAAGGTCGGTTGACTTTTAAAGGCATCCCTATAGCAA 216 ************************ ** **** * * **** * * consensus_1529#0 TGGAAGGAATGCCTCTCCTGC-TGCTGGAGTTTGCCATTGGCCAACGTCTCAGGAAAGGC 297 consensus_1529#1 CTTTTAACATTCATTTGTTAAATTTTTGATTATTTCTTGTAGCAACAACTGTGTCAAAGA 276 ** * * * * * * ** * * * * **** ** * ** * consensus_1529#0 AGCG-TGGGGGTGTGGAGGACCATCAGCCCTTACCTGACCGGCATCGGTATCGCCTC-CA 355 consensus_1529#1 TGCAATAATCCTGTCTGTGGTCACCGGCTTCACCTCAGTCTACGCTGCCATGGTCACGTA 336 ** * *** * ** * ** * * * * ** * * * * consensus_1529#0 TGTTGGTGTCACTTTTGGTCGGACTGTACTACAACACATTAATAGCCTGGATCCTGTGGT 415 consensus_1529#1 CTCCATCATTGGTTTCAGAGCCACTGAAAAATATGACAACTGCATCGACAATAACATCGT 396 * *** * **** * * * *** * * ** * ** consensus_1529#0 -ATCTCTTTAATTCCTTTCAAGACCCACTACCATGGAATCACTGTCCTCTAAATGACAAT 474 consensus_1529#1 GAGATTACTAAACGCCTTCAGCCTCCCTGAAGACAGCATCACTGC-----GGACAACTAT 451 * * *** * **** ** * * * ******* * ** ** consensus_1529#0 AGGACAGGGTTTGTGTCAGAGTGTCAACAGAGCACCACGGTGGATTACTTCTTTTATAGA 534 consensus_1529#1 GAAACAGCCTTCA----AGCATCTGAACAGCTCCTCTC-----ATGACATCGTGCTTGGA 502 **** ** ** * * ***** * * * ** ** ** * * ** consensus_1529#0 GTG-ACACTAAAGAGTACGACCTCCATAGAGGACTCTG-GAGGGATCAACTGGCCGATAG 592 consensus_1529#1 CTGGACATAGAAAAGTACAACATGCAGAGGCTTCTCAGTGAGGGAGTG------------ 550 ** *** ** ***** ** * ** ** *** * ****** consensus_1529#0 TTGCCTGCTTGTTTGCCGCCTGGTCACTCGTTGCTATCTGCTGCATGAGAGGCATCAGCA 652 consensus_1529#1 ------------------------------------------------------------ consensus_1529#0 CCTCAGGCAAGGCTGTGTACGTCACCGCTATCCTGCCTTACATAGTGCTCGGCATCTTTC 712 consensus_1529#1 ------------------------------------------------------------ consensus_1529#0 TGATCCGTGGGCTGACACTGAAAGGTGCAATGAGTGGGATCGAATTCCTCTTCGTGCCAG 772 consensus_1529#1 ------------------------------------------------------------ consensus_1529#0 ATGTGACTGAGTTAAGCACCCCA 795 consensus_1529#1 ----------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |