These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1603#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 345 fasta sequence [AACGCCGCAACCATGTCTTCTACAACCCCTCTGGCAGGTGCCATAGCAGTCCTCATGGGAGTGTTCCAAAAATACGCCAGTAAGGATGCCAATTCGAAGACCCTGAGCAGAGCTGAGGTCAAGACTTTGATCGAGAAAGAGTTGCCTATGTTCGTGGAGGATCCAAGTAGCAAGAAAGGAGTCCAAGAAATGTTCGCGGCACTGGAAGATGGGAGCGGAGAGGTCGACTTCTGTGGGTTTATGCTTCAAGTGGCAACTCTAGCCATGATCTGCAAATCACTGGTTGATCCGATAAACTGAATAAAAAGATTGGGCTTTACTGACTCTTTAAAAAAAAAAAAAAAA] [+] EMBL CA846676 [AACGCCGCAACCATGTCTTCTACAACCCCTCTGGCAGGTGCCATAGCAGTCCTCATGGGAGTGTTCCAAAAATACGCCAGTAAGGATGCCAATTCGAAGACCCTGAGCAGAGCTGAGGTCAAGACTTTGATCGAGAAAGAGTTGCCTATGTTCGTGGAGGATCCAAGTAGCAAGAAAGGAGTCCAAGAAATGTTCGCGGCACTGGAAGATGGGAGCGGAGAGGTCGACTTCTGTGGATTTATGCTTCAAGTGGCAACTCTAGCCATGATCTGCAAATCACTGGTTGATCCGATAAACTGAATAAAAAGATTGGGCTTTACTGACTCTTTAAAAAAAAAAAAAAAA] [+] EMBL FR0056242 [ TCATGGGAGTGTTCCAAAAATACGCCAGTAAGGATGCCAATTCGAAGACCCTGAGCAGAGCTGAGGTCAACACTTTGATCGAGAAAGAGTTGCCTATGTTCGTGGAGGATCCAAGTAGCACGAAAGGAGTCCAAGAAATGTTCGCGGCACTGGAAGATGGGAGCGGTGAGGTCGACTTCTGTGGGTTTATGCTTCAAGTGGCAACTCTAGCCA ] consensusID : consensus_1603#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [CCATAGCAGTCCTCATGGGAGTGTTCCAAAAATACGCCAGTAAGGATGCCAATTCGAAGACCCTGAGCAGAGCTGAGGTCAAGACTTTGATCGAGAAAGAGTTGCCTATGTTCGTGGAGGATCCAAGTAGCACGAAAGGAGTCCAAGAGATGTTCGCGGGACTGGAAGATGGGAGCGGAGAGGTCGACTTCTGTGGATTTATGCTTCAAGTGGGAACTCTAGCCATGATCTGCAAATCACTGGTTGATCCGATACACTGAATAAAAGGATTGGGCTTTACTGACAGGGAGGGAAG] [+] EMBL FR0056197 [CCATAGCAGTCCTCATGGGAGTGTTCCAAAAATACGCCAGTAAGGATGCCAATTCGAAGACCCTGAGCAGAGCTGAGGTCAAGACTTTGATCGAGAAAGAGTTGCCTATGTTCGTGGAGGATCCAAGTAGCACGAAAGGAGTCCAAGAGATGTTCGCGGGACTGGAAGATGGGAGCGGAGAGGTCGACTTCTGTGGATTTATGCTTCAAGTGGGAACTCTAGCCATGATCTGCAAATCACTGGTTGATCCGATACACTGAATAAAAGGATTGGGCTTTACTGACAGGGAGGGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1603#0 AACGCCGCAACCATGTCTTCTACAACCCCTCTGGCAGGTGCCATAGCAGTCCTCATGGGA 60 consensus_1603#1 ----------------------------------------CCATAGCAGTCCTCATGGGA 20 ******************** consensus_1603#0 GTGTTCCAAAAATACGCCAGTAAGGATGCCAATTCGAAGACCCTGAGCAGAGCTGAGGTC 120 consensus_1603#1 GTGTTCCAAAAATACGCCAGTAAGGATGCCAATTCGAAGACCCTGAGCAGAGCTGAGGTC 80 ************************************************************ consensus_1603#0 AAGACTTTGATCGAGAAAGAGTTGCCTATGTTCGTGGAGGATCCAAGTAGCAAGAAAGGA 180 consensus_1603#1 AAGACTTTGATCGAGAAAGAGTTGCCTATGTTCGTGGAGGATCCAAGTAGCACGAAAGGA 140 **************************************************** ******* consensus_1603#0 GTCCAAGAAATGTTCGCGGCACTGGAAGATGGGAGCGGAGAGGTCGACTTCTGTGGGTTT 240 consensus_1603#1 GTCCAAGAGATGTTCGCGGGACTGGAAGATGGGAGCGGAGAGGTCGACTTCTGTGGATTT 200 ******** ********** ************************************ *** consensus_1603#0 ATGCTTCAAGTGGCAACTCTAGCCATGATCTGCAAATCACTGGTTGATCCGATAAACTGA 300 consensus_1603#1 ATGCTTCAAGTGGGAACTCTAGCCATGATCTGCAAATCACTGGTTGATCCGATACACTGA 260 ************* **************************************** ***** consensus_1603#0 ATAAAAAGATTGGGCTTTACTGACTCTTTAAAAAAAAAAAAAAAA 345 consensus_1603#1 ATAAAAGGATTGGGCTTTACTGAC-----AGGGAGGGAAG----- 295 ****** ***************** * * ** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |