These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence [CAGCAACAGGACGAGCAGGCAAAATGCGTGAGTGTATTTCCATGCACGTGGGCCAAGCTGGGGCCCAAATGGGCAATGCATGCTGGGAACTGTATTGTCTGGAACACGGGATCCAGCCAGATGGACAGATGCCCAGTGACAAGACCATTGGAGGGGGAGATGACTCCTTCAACACCTTCTTCAGCGAGACCGGAGCAGGGAAACATGTTCCCAGAGCCATTTTTGTTGACTTAGAACCTACTGTGATCGATGAGGTGCGTACAGGAACCTACCGGCAGCTATTCCACCCTGAGCAGCTGATCACAGGGAAGGAAGATGCGGCCAACAACTATGCCCGTGGACACTACACCATTGGCAAAGAAATCATCGATCTGGTTCTGGACCGGACTCGTAAATTGGCTGATCAGTGCACTGGCCTTCAAGGATTCCTCATCTTTCACTCCTTTGGTGGGGGCACTGGTTCAGGTTTCACCTCACTGTTGATGGAGAGACTCTCTGTCGATTATGGCAAAAAGTCTAAGCTTGAGTTTGCCGTATACCCGGCACCCCAGGTCTCCACTGCAGTGGTGGAGCCTTACAACTCCATCTTGACCACCCACACCACCCTGGAGCACTCTGACTGTG] [+] EMBL CA341083 [CAGCAACAGGACGAGCAGGCAAAATGCGTGAGTGTATTTCCATGCACGTGGGCCAAGCTGGGGCCCAAATGGGCAATGCATGCTGGGAACTGTATTGTCTGGAACACGGGATCCAGCCAGATGGACAGATGCCCAGTGACAAGACCATTGGAGGGGGAGATGACTCCTTCAACACCTTCTTCAGCGAGACCGGAGCAGGGAAACATGTTCCCAGAGCCATTTTTGTTGACTTAGAACCTACTGTGATCGATGAGGTGCGTACAGGAACCTACCGGCAGCTATTCCACCCTGAGCAGCTGATCACAGGGAAGGAAGATGCGGCCAACAACTATGCCCGTGGACACTACACCATTGGCAAAGAAATCATCGATCTGGTTCTGGACCGGACTCGTAAATTGGCTGATCAGTGCACTGGCCTTCAAGGATTCCTCATCTTTCACTCCTTTGGTGGGGGCACTGGTTCAGGTTTCACCTCACTGTTGATGGAGAGACTCTCTGTCGATTATGGCAAAAAGTCTAAGCTTGAGTTTGCCGTATACCCGGCACCCCAGGTCTCCACTGCAGTGGTGGAGCCTTACAACTCCATCTTGACCACCCACACCACCCTGGAGCACTCTGACTGTG] [+] EMBL CA341009 [CAGCAACAGGACGAGCAGGCAAAATGCGTGAGTGTATTTCCATGCACGTGGGCCAAGCTGGGGCCCAAATGGGCAATGCATGCTGGGAACTGTATTGTCTGGAACACGGGATCCAGCCAGATGGACAGATGCCCAGTGACAAGACCATTGGAGGGGGAGATGACTCCTTCAACACCTTCTTCAGCGAGACCGGAGCAGGGAAACATGTTCCCAGAGCCATTTTTGTTGACTTAGAACCTACTGTGATCGATGAGGTGCGTACAGGAACCTACCGGCAGCTATTCCACCCTGAGCAGCTGATCACAGGGAAGGAAGATGCGGCCAACAACTATGCCCGTGGACACTACACCATTGGCAAAGAAATCATCGATCTGGTTCTGGACCGGACTCGTAAATTGGCTGATCAGTGCACTGGCCTTCAAGGATTCCTCATCTTTCACTCCTTTGGTGGGGGCACTGGTTCAGGTTTCACCTCACTGTTGATGGAGAGACTCTCTGTCGATTATGGCAAAAAGTCTAAGCTTGAGTTTGCCGTATACCCGGCACCCCAGGTCTCCACTGCAGTGGTGGAGCCTTACAACTCCATCTTGACCACCCACACCACCCTGGAGCACTCTGACTG ] consensusID : consensus_1611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence [AGGATCCGTCAACTGTCAGATCAGTGCACGGGGCTTCAGGGATTCCTCATCTTTCACTCCTTTGGTGGGGACACTGGTTCAGGTTTCAGCTCACTGATGATGGAGAGACTCTCTGTCGATTATGGCACAGGGTCTAAGCTTGAGTTCGCCATCTACCCGGCAGTCCAGGTCTCCACTGCAGTGGTGGTGGCTTACAACTCCATCTTGACCACCCACACCACCATGGCGCACTCTGACTGTGCCTTCACGGTGGTCAACGAGGACATCTACGTGATCTGCCGCAGGAGCCTGGTCATTGAGAGGCCGACCTACACCAACCTTAACAGGCTCATCAGCCAGGTAGTGTCCTCCATCAC] [+] EMBL FR0055465 [AGGATCCGTCAACTGTCAGATCAGTGCACGGGGCTTCAGGGATTCCTCATCTTTCACTCCTTTGGTGGGGACACTGGTTCAGGTTTCAGCTCACTGATGATGGAGAGACTCTCTGTCGATTATGGCACAGGGTCTAAGCTTGAGTTCGCCATCTACCCGGCAGTCCAGGTCTCCACTGCAGTGGTGGTGGCTTACAACTCCATCTTGACCACCCACACCACCATGGCGCACTCTGACTGTGCCTTCACGGTGGTCAACGAGGACATCTACGTGATCTGCCGCAGGAGCCTGGTCATTGAGAGGCCGACCTACACCAACCTTAACAGGCTCATCAGCCAGGTAGTGTCCTCCATCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1611#0 CAGCAACAGGACGAGCAGGCAAAATGCGTGAGTGTATTTCCATGCACGTGGGCCAAGCTG 60 consensus_1611#1 ------------------------------------------------------------ consensus_1611#0 GGGCCCAAATGGGCAATGCATGCTGGGAACTGTATTGTCTGGAACACGGGATCCAGCCAG 120 consensus_1611#1 ------------------------------------------------------------ consensus_1611#0 ATGGACAGATGCCCAGTGACAAGACCATTGGAGGGGGAGATGACTCCTTCAACACCTTCT 180 consensus_1611#1 ------------------------------------------------------------ consensus_1611#0 TCAGCGAGACCGGAGCAGGGAAACATGTTCCCAGAGCCATTTTTGTTGACTTAGAACCTA 240 consensus_1611#1 ------------------------------------------------------------ consensus_1611#0 CTGTGATCGATGAGGTGCGTACAGGAACCTACCGGCAGCTATTCCACCCTGAGCAGCTGA 300 consensus_1611#1 ------------------------------------------------------------ consensus_1611#0 TCACAGGGAAGGAAGATGCGGCCAACAACTATGCCCGTGGACACTACACCATTGGCAAAG 360 consensus_1611#1 ------------------------------------------------------------ consensus_1611#0 AAATCATCGATCTGGTTCTGGACCGGACTCGTAAATTGGCTGATCAGTGCACTGGCCTTC 420 consensus_1611#1 -----------------------AGGATCCGTCAACTGTCAGATCAGTGCACGGGGCTTC 37 *** *** ** ** * *********** ** **** consensus_1611#0 AAGGATTCCTCATCTTTCACTCCTTTGGTGGGGGCACTGGTTCAGGTTTCACCTCACTGT 480 consensus_1611#1 AGGGATTCCTCATCTTTCACTCCTTTGGTGGGGACACTGGTTCAGGTTTCAGCTCACTGA 97 * ******************************* ***************** ******* consensus_1611#0 TGATGGAGAGACTCTCTGTCGATTATGGCAAAAAGTCTAAGCTTGAGTTTGCCGTATACC 540 consensus_1611#1 TGATGGAGAGACTCTCTGTCGATTATGGCACAGGGTCTAAGCTTGAGTTCGCCATCTACC 157 ****************************** * *************** *** * **** consensus_1611#0 CGGCACCCCAGGTCTCCACTGCAGTGGTGGAGCCTTACAACTCCATCTTGACCACCCACA 600 consensus_1611#1 CGGCAGTCCAGGTCTCCACTGCAGTGGTGGTGGCTTACAACTCCATCTTGACCACCCACA 217 ***** *********************** * *************************** consensus_1611#0 CCACCCTGGAGCACTCTGACTGTG------------------------------------ 624 consensus_1611#1 CCACCATGGCGCACTCTGACTGTGCCTTCACGGTGGTCAACGAGGACATCTACGTGATCT 277 ***** *** ************** consensus_1611#0 ------------------------------------------------------------ consensus_1611#1 GCCGCAGGAGCCTGGTCATTGAGAGGCCGACCTACACCAACCTTAACAGGCTCATCAGCC 337 consensus_1611#0 ------------------- consensus_1611#1 AGGTAGTGTCCTCCATCAC 356 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |