These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [AACAGAACCAGTTTAATCTTCAGTAAAAATACAATTTTTCCAGTTTCTTGTATCAAAGGTTGAAACAGGATCAGAACTTCCACAAACATGAACTGTGTGTGCACGTGTGTGTGCACGTGTGTGTGATTAAATCATGCCGACACTGCATCAAACACTCCTTTTCCTCATTGATCCACCCGTCTCTCCGCTTCTCCTTTAGCTCCTGCTTCACTCCATCTTTGACATCTCAAATTTGGTCGTCATGGCTTCCTCATCAGAGTCCAGCAGGGGGGGCAGCGCTACGTCGGCCATAGAGGAGGGGATGTTGTCCTCCACCCACTTCAGATCCTCATCCACCTTGCTGGCCTTGGCGGCGCCGTTGCTCTCGTTCTTCATCCCTCTCATCTTCATCCCCTCAAAGGCCTCGTTCATCACCGCTTCCTTCTCCTCTTCCTCGCTTTCTTCGTCCAGCAGAGGGCTGAAGGCAAACCTCTGGTTATTGAAGGACGGGCGCCACAGGAACATGATGACCAGCAAGATGATGGAAAAGAGGAAGGGCCCAAAAGCGTC] [+] EMBL CA331299 [AACAGAACCAGTTTAATCTTCAGTAAAAATACAATTTTTCCAGTTTCTTGTATCAAAGGTTGAAACAGGATCAGAACTTCCACAAACATGAACTGTGTGTGCACGTGTGTGTGCACGTGTGTGTGATTAAATCATGCCGACACTGCATCAAACACTCCTTTTCCTCATTGATCCACCCGTCTCTCCGCTTCTCCTTTAGCTCCTGCTTCACTCCATCTTTGACATCTCAAATTTGGTCGTCATGGCTTCCTCATCAGAGTCCAGCAGGGGGGGCAGCGCTACGTCGGCCATAGAGGAGGGGATGTTGTCCTCCACCCACTTCAGATCCTCATCCACCTTGCTGGCCTTGGCGGCGCCGTTGCTCTCGTTCTTCATCCCTCTCATCTTCATCCCCTCAAAGGCCTCGTTCATCACCGCTTCCTTCTCCTCTTCCTCGCTTTCTTCGTCCAGCAGAGGGCTGAAGGCAAACCTCTGGTTATTGAAGGACGGGCGCCACAGGAACATGATGACCAGCAAGATGATGGAAAAGAGGAAGGGCCCAAAAGCGTC] consensusID : consensus_162#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence [AGAACCAGTTTAATCTTCAGTAAAAATACAATTTTTCCAGTTTCTTGTATCAAAGGTTGAAACAGGATCAGAACTTCCACAAACATGAACTGTGTGTGCACGTGTGTGTGCACGTGTGTGTGATTAAATCATGCCGACACTGCATCAAACACTCCTTTTCCTCATTGATCCACCCGTCTCTCCGCTTCTCCTTTAGCTCCTGCTTCACTCCATCTTTGACATCTCAAATTTGGTCGTCATGGCTTCTGGTCTCCTCATTTATGATCACTGATAAACTGTCGGGGCAGTTACGTAACCATGGCAACAGCTCAGGGCGGCGCGGGTTCTGTCGCCATCTGCTGGTCAGAATGCGAACTACAGGCAGGAAAAATGACGCGGGCACCGCCCGCGACCGCTCCAGGGATCAGGTTATTGGGGTAATGACGTCACAGTAGG] [+] EMBL CA329478 [AGAACCAGTTTAATCTTCAGTAAAAATACAATTTTTCCAGTTTCTTGTATCAAAGGTTGAAACAGGATCAGAACTTCCACAAACATGAACTGTGTGTGCACGTGTGTGTGCACGTGTGTGTGATTAAATCATGCCGACACTGCATCAAACACTCCTTTTCCTCATTGATCCACCCGTCTCTCCGCTTCTCCTTTAGCTCCTGCTTCACTCCATCTTTGACATCTCAAATTTGGTCGTCATGGCTTCTGGTCTCCTCATTTATGATCACTGATAAACTGTCGGGGCAGTTACGTAACCATGGCAACAGCTCAGGGCGGCGCGGGTTCTGTCGCCATCTGCTGGTCAGAATGCGAACTACAGGCAGGAAAAATGACGCGGGCACCGCCCGCGACCGCTCCAGGGATCAGGTTATTGGGGTAATGACGTCACAGTAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_162#0 AACAGAACCAGTTTAATCTTCAGTAAAAATACAATTTTTCCAGTTTCTTGTATCAAAGGT 60 consensus_162#1 ---AGAACCAGTTTAATCTTCAGTAAAAATACAATTTTTCCAGTTTCTTGTATCAAAGGT 57 ********************************************************* consensus_162#0 TGAAACAGGATCAGAACTTCCACAAACATGAACTGTGTGTGCACGTGTGTGTGCACGTGT 120 consensus_162#1 TGAAACAGGATCAGAACTTCCACAAACATGAACTGTGTGTGCACGTGTGTGTGCACGTGT 117 ************************************************************ consensus_162#0 GTGTGATTAAATCATGCCGACACTGCATCAAACACTCCTTTTCCTCATTGATCCACCCGT 180 consensus_162#1 GTGTGATTAAATCATGCCGACACTGCATCAAACACTCCTTTTCCTCATTGATCCACCCGT 177 ************************************************************ consensus_162#0 CTCTCCGCTTCTCCTTTAGCTCCTGCTTCACTCCATCTTTGACATCTCAAATTTGGTCGT 240 consensus_162#1 CTCTCCGCTTCTCCTTTAGCTCCTGCTTCACTCCATCTTTGACATCTCAAATTTGGTCGT 237 ************************************************************ consensus_162#0 CATGGCTTCCTCATCAGAGTCCAGCAGGGGGGGCAGCGCTACGTCGGCCATAGAGGAGGG 300 consensus_162#1 CATGGCTTCT-----GGTCTCCTCATTTATGATCACTGATA----AACTGTCGGGGCAGT 288 ********* * *** * ** * ** * * * ** * consensus_162#0 GATGTTGTCCTCCACCCACTTCAGATCCTCATCCACCTTGCTGGCCTTGGCGGCGCCGTT 360 consensus_162#1 TACGTAACCATGGCAACAGCTCAGGGCGGCGCGGGTTCTGTCGCCAT--------CTGCT 340 * ** * * ** **** * * ** * * * * * * consensus_162#0 GCTCTCGTTCTTCATCCCTCTCATCTTCATCCCCTCAAAGGCCTCGTTCATCACCGCTTC 420 consensus_162#1 GGTCAGAATGCGAACTACAGGCAGGAAAAATGACGCG--GGCACCGCCCGCGACCGCTCC 398 * ** * * * ** * * * *** ** * ****** * consensus_162#0 CTTCTCCTCTTCCTCGCTTTCTTCGTCCAGCAGAGGGCTGAAGGCAAACCTCTGGTTATT 480 consensus_162#1 AGGGATCAGGTTATTGGGGTAATGACGTCACAGTAGG----------------------- 435 * * * * * * *** ** consensus_162#0 GAAGGACGGGCGCCACAGGAACATGATGACCAGCAAGATGATGGAAAAGAGGAAGGGCCC 540 consensus_162#1 ------------------------------------------------------------ consensus_162#0 AAAAGCGTC 549 consensus_162#1 --------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |