These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [CAATGCCTCTTTATTATAGTACATGCTTGAGCATGGCACAAAACACAGCCATAGAAAGTTAAGCAAAATGATACAATTATCAATCACGGCGACTCACAGTGGATAACATCTAGAAAACAATGTTTAACTACCGCACTACATGAGGATGACCTCTTTTCCCACATTGACACAAAAAACAAAATCTTTTCATAAAAAGTAACCTGTAGAGCTAAAATGCAATAATAAACTTAAATACAAGAGATGCACGCTTGCTTTGAAGAAGCTGTACAAATGGTGCTGCTGAGCATCGGAGAGCAGCGTTTAAAAACGAGGTTTCTTAGAGGGGCCGTCAAATTCTTCACGGACCCTACCATAACCAGGGTTGCCAGGACCCATTCCCCTAGGGCCCCCCTGGGAGAAGCGCTCATTGCGCATGTCATTGCCCATCATGTTTCCTGGAGATGATCCCATCCCTTGCTGCCCTTCAAAGCCAAGTCCACCCATTGGGAACTTCTGACCAGCACCCAAACCCATGGCCCCACCTGAATTCATTCTCATTTCTCTCTCCCTGTCCATAAAGCCTCCCATTCTGTAGTTCTCCTCACGCTGGCGACGCATCTGCTCTTCCATCTC] [+] EMBL CA333026 [CAATGCCTCTTTATTATAGTACATGCTTGAGCATGGCACAAAACACAGCCATAGAAAGTTAAGCAAAATGATACAATTATCAATCACGGCGACTCACAGTGGATAACATCTAGAAAACAATGTTTAACTACCGCACTACATGAGGATGACCTCTTTTCCCACATTGACACAAAAAACAAAATCTTTTCATAAAAAGTAACCTGTAGAGCTAAAATGCAATAATAAACTTAAATACAAGAGATGCACGCTTGCTTTGAAGAAGCTGTACAAATGGTGCTGCTGAGCATCGGAGAGCAGCGTTTAAAAACGAGGTTTCTTAGAGGGGCCGTCAAATTCTTCACGGACCCTACCATAACCAGGGTTGCCAGGACCCATTCCCCTAGGGCCCCCCTGGGAGAAGCGCTCATTGCGCATGTCATTGCCCATCATGTTTCCTGGAGATGATCCCATCCCTTGCTGCCCTTCAAAGCCAAGTCCACCCATTGGGAACTTCTGACCAGCACCCAAACCCATGGCCCCACCTGAATTCATTCTCATTTCTCTCTCCCTGTCCATAAAGCCTCCCATTCTGTAGTTCTCCTCACGCTGGCGACGCATCTGCTCTTCCATCTC] consensusID : consensus_1628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 605 fasta sequence [AGGAGACTTGGCATGCCATTGAGCCACCAACAAGAAAATTGCCACGTTAAAAGATGGCAGAGTCGGGAGTAACTTCCGGTCAGCTAGGCAAAAACCAAAAAAACCCAAAACAGCTGAAAAATCTATCAAGTAATGAAGTCCTTAAAAGTCGAATACATTACCATGTCATTGCCCATCATGTTTCCTGGAGATGATCCCATCCCTTGCTGCCCTTCAAAGCCAAGTCCACCCATTGGGAACTTCTGACCAGCACCCAAACCCATGGCCCCACCTGAATTCATTCTCATTTCTCTCTCCCTGTCCATAAAGCCTCCCATTCTGTAGTTCTCCTCACGCTGGCGACGCATCTGCTCTTCCATCTCCCGTTTCCGAAGCATTTCCTCTTCACGTCGCCGACGCTCTTCTTCTTGTCTTAACTGCAGCTCCTTTCTCTTCTGCATTTCTTGACTGTGCAGTTCCTCCATACGCCGCAACTCCTCCTGTCGTCTTAGAAGGTCTTGTCTTAACAAGTTGGCTTGGTGCTCGTGGTAGGCATCTTCCATCTCTGCCTCAAGCTTCTCCCGAGCTTCTTGCATGTTTTTTTCCACCTGCTGCCTCTGTTGCTT] [+] EMBL CA331789 [AGGAGACTTGGCATGCCATTGAGCCACTAACAAGAAAATTGCCACGTTAAAAGATGGCAGAGTCGGGAGTAACTTCCGGTCAGCTAGGCAAAAACCAAAAAAACCCAAAACAGCTGAAAAATCTATCAAGTAATGAAGTCCTTAAAAGTCGAATACATTACCATGTCATTGCCCATCATGTTTCCTGGAGATGATCCCATCCCTTGCTGCCCTTCAAAGCCAAGTCCACCCATTGGGAACTTCTGACCAGCACCCAAACCCATGGCCCCACCTGAATTCATTCTCATTTCTCTCTCCCTGTCCATAAAGCCTCCCATTCTGTAGTTCTCCTCACGCTGGCGACGCATCTGCTCTTCCATCTCCCGTTTCCGAAGCATTTCCTCTTCACGTCGCCGACGCTCTTCTTCTTGTCTTAACTGCAGCTCCTTTCTCTTCTGCATTTCTTGACTGTGCAGTTCCTCCATACGCCGCAACTCCTCCTGTCGTCTTAGAAGGTCTTGTCTTAACAAGTTGGCTTGGTGCTCGTGGTAGGCATCTTCCATCTCTGCCTCAAGCTTCTCCCGAGCTTCTTGCATGTTTTTTTCCACCTGCTGCCTCTGTTGCTT] [+] EMBL CA329708 [ GACTTGGCATGCCATTGATCCACCAACAAGAAAATTGCCACGTTAAAAGATGGCAGAGTCGGGAGTAACTTCCGGTCAGCTAGGCAAAAACCAAAAAAACCCAAAACAGCTGAAAAATCTATCAAGTAATGAAGTCCTTAAAAGTCGAATACATTACCATGTCATTGCCCATCATGTTTCCTGGAGATGATCCCATCCCTTGCTGCCCTTCAAAGCCAAGTCCACCCATTGGGAACTTCTGACCAGCACCCAAACCCATGGCCCCACCTGAATTCATTCTCATTTCTCTCTCCCTGTCCATAAAGCCTCCCATTCTGTAGTTCTCCTCACGCTGGCGACGCATCTGCTCTTCCATCTCCCGTTTCCGAAGCATTTCCTCTTCACGTCGCCGACGCTCTTCTTCTTGTCTTAACTGCAGCTCCTTTCTCTTCTGCATTTCTTGACTGTGCAGTTCCTCCATACGCCGCAACTCCTCCTGTCGTCTTAGAAGGTCTTGTCTTAACAAGTTGGCTTGGTGCTCGTGGTAGGCATCTTCCATCTCTGCCTCAAGCTTCTCCCGAGCTTCTTGCATGTTTTTTTCCACCTGCTGCCTCTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1628#0 CAATGCCTCTTTATTATAGTACATGCTTGAGCATGGCACAAAACACAGCCATAGAAAGTT 60 consensus_1628#1 --------AGGAGACTTGGCATGCCATTGAGC----CACCAACAAGAAAATTGCCACGTT 48 * * * ****** *** ** * * * * *** consensus_1628#0 AAGCAAAATGATACAATTATCAATCACGGCGACTCACAGTGGATAACATCTAGAAAACAA 120 consensus_1628#1 AA--AAGATGGCAGAGTCGGGAGTAACTTCCGGTCAGCTAGGCAAAAACCAAAAAAACCC 106 ** ** *** * * * * * ** * *** ** ** * * * ***** consensus_1628#0 TGTTTAACTACCGCA-CTACATGAGGATGACCTCTTTTCCCACATTGACACAAAAAACAA 179 consensus_1628#1 AAAACAGCTGAAAAATCTATCAAGTAATGAAGTCCTTA---AAAGTCGAATACATTACCA 163 * ** * *** **** ** ** * * * * * * ** * consensus_1628#0 AATCTTTTCATAAAAAGTAACCTGTAGA-GCTAAAATGCAATAATAAACTTAAATACAAG 238 consensus_1628#1 TGTCATTGCCCATCATGTTTCCTGGAGATGATCCCATCCCTTGCTGCCCTTCAAAGC--- 220 ** ** * * * ** **** *** * * ** * * * *** ** * consensus_1628#0 AGATGCACGCTTGCTTTGAAGAAGCTGTACAAATGGTGCTGCTGAGCATCGGAGAGCAGC 298 consensus_1628#1 -----CAAGTCCACCCATTGGGAACT-TCTGACCAGCACCCAAACCCATGGCCCCACCTG 274 ** * * * * ** * * * * *** * * consensus_1628#0 GTTTAAAAACGAGGTTTCTTAGAGGGGCCGTCAAATTCTTCACGGACCCTACCATAACCA 358 consensus_1628#1 AATTCATTCTCATTTCTCTCTCCCTGTCCATAAAGCCTCCCATT--CTGTAGTTCTCCTC 332 ** * * * *** * ** * ** ** * ** * consensus_1628#0 GGGTTGCCAGGACCCATTCCCCTAGGGCCCCCCTGGGAGAAGCGCTCATTGCGCATGTCA 418 consensus_1628#1 ACGCTGGCGACGCATCTGCTCTTCCATCTCCCGTTTCCGAAGCATTTCCTCTTCACGTCG 392 * ** * * * * * * * *** * ***** * * ** *** consensus_1628#0 TTGCCCATCATGTT----TCCTGGAGATGATCCCATCCCTTGCTGCCCTTCAAAGCCA-- 472 consensus_1628#1 CCGACGCTCTTCTTCTTGTCTTAACTGCAGCTCCTTTCTCTTCTGCATTTCTTGACTGTG 452 * * ** * ** ** * ** * * * **** *** * consensus_1628#0 -AGTCCACCCATTGG--GAACTTCTGACCAGCACCCAAACCCATGGCCCCACCTGAATTC 529 consensus_1628#1 CAGTTCCTCCATACGCCGCAACTCCTCCTGTCGTCTTAG---AAGGTCTTGTCTTAACAA 509 *** * **** * * * ** * * * * * ** * ** ** consensus_1628#0 ATTCTCATTTCTCTCTCCCTGTCCATAAAGCCTCCCATTCTGTAGTTCTCCTCACGCTGG 589 consensus_1628#1 GTTGGCTTGGTGCTCGTGGTAGGCATCTTCCATCTCTGCCTCAAGCTTCTCCCGAGCT-- 567 ** * * *** * *** * ** * ** ** * * * *** consensus_1628#0 CGACGCATCTGCTCTTCCATCTC--------------- 612 consensus_1628#1 TCTTGCATGTTTTTTTCCACCTGCTGCCTCTGTTGCTT 605 **** * * ***** ** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |