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Takifugu rubripes
cluster # 1643 cluster # 1643       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1643#0 length = 587 sequences # 1  
 consensus_1643#1 length = 410 sequences # 2  
consensusID : consensus_1643#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 587
fasta sequence 
                              [TGAAAAAAAAATGAAAGTTTTCCTGGCGTTAACTGCTTTGCTGGCAACTTGCCTGGCACAGGAGCCTCATCCATGCAGGAGTCCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACACAAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCCGCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACTTCCGAAAGGTGGTCCTAGGAGATCTATGACTCCTGGAATTGTCTTATCCAAAGAAAGCACACGTTTGGTGTGATATTTCAGTGTTAGAGCGCTTAATTTGTTTGATTATTTATTGTTTGTCCCATAGTTAATGTCTTTTAAACCTGCTCCTGCAGTTTTTATGAGCTCCTTTGAAAAAAGGCGCAGTAAAAACGGTGAACAAGTCCAAGTAAGATAAGCATTAAAGGCACCCAAAGCGTACTGTGTTTTATTAGTAAGACAAGGAACTGGGCCATGGCTGCACTCTAAAACTCTCGTTATTTTTTAGGGCATCATGTACGAGATTAACAGAAAGAATAAGACATGCAA]

[+] EMBL CA846780             [TGAAAAAAAAATGAAAGTTTTCCTGGCGTTAACTGCTTTGCTGGCAACTTGCCTGGCACAGGAGCCTCATCCATGCAGGAGTCCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACACAAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCCGCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACTTCCGAAAGGTGGTCCTAGGAGATCTATGACTCCTGGAATTGTCTTATCCAAAGAAAGCACACGTTTGGTGTGATATTTCAGTGTTAGAGCGCTTAATTTGTTTGATTATTTATTGTTTGTCCCATAGTTAATGTCTTTTAAACCTGCTCCTGCAGTTTTTATGAGCTCCTTTGAAAAAAGGCGCAGTAAAAACGGTGAACAAGTCCAAGTAAGATAAGCATTAAAGGCACCCAAAGCGTACTGTGTTTTATTAGTAAGACAAGGAACTGGGCCATGGCTGCACTCTAAAACTCTCGTTATTTTTTAGGGCATCATGTACGAGATTAACAGAAAGAATAAGACATGCAA]




>consensus_1643#0
TGAAAAAAAAATGAAAGTTTTCCTGGCGTTAACTGCTTTGCTGGCAACTTGCCTGGCACA
GGAGCCTCATCCATGCAGGAGTCCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACACA
AAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCCG
CATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACTT
CCGAAAGGTGGTCCTAGGAGATCTATGACTCCTGGAATTGTCTTATCCAAAGAAAGCACA
CGTTTGGTGTGATATTTCAGTGTTAGAGCGCTTAATTTGTTTGATTATTTATTGTTTGTC
CCATAGTTAATGTCTTTTAAACCTGCTCCTGCAGTTTTTATGAGCTCCTTTGAAAAAAGG
CGCAGTAAAAACGGTGAACAAGTCCAAGTAAGATAAGCATTAAAGGCACCCAAAGCGTAC
TGTGTTTTATTAGTAAGACAAGGAACTGGGCCATGGCTGCACTCTAAAACTCTCGTTATT
TTTTAGGGCATCATGTACGAGATTAACAGAAAGAATAAGACATGCAA

consensusID : consensus_1643#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 410
fasta sequence 
                              [TGTTGGCAACTTGCCTGGCACAGGAGCCTGAGTCCATGCAGGAGGGCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACACAAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCCGCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACTTCCGAAAGGGCATCATGTACGAGATTAACAGAAAGAATAAGACATGCAAGAAGGCGCCGCTGAAGACCGACTTCCAGCCCATGTCTGTCCCAAAAGATGCCTCCCTTCTGGGGCAGGCCATTCTCGGAAGTTCATCTGCACCCGGACAGGGACTTCTGGTCAACACCTGGATGGGAGACCTGCCCAAAACAGGAGGGAAAGGACTTGA]

[+] EMBL FR0062977            [TGTTGGCAACTTGCCTGGCACAGGAGCCTG GTCCATGCAGGAGGGCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACACAAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCCGCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACTTCCGAAAGGGCATCATGTACGAGATTAACAGAAAGAATAAGACATGCAAGAAGTCGCCGCTGAAGACCGACTTCCAGCCCATGTCTGTCCCAAAAGATGCCTCCCTTCTGGGGCAGGCCATTCTCGGAAGTTTATCTGCACCCGGACAGGGA                                                        ]
[+] EMBL FR0062943            [   TGGCAACTTGCCTGGCACAGGAGCCTGAGTCCATGCAGGAGTCCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACACAAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCCGCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACTTCCGAAAGGGCATCATGTACGAGATTAACAGAAAGAATAAGACATGCAAGAAGGCGCCGCTGAAGACCGACTTCCAGCCCATGTCTGTCCCAAAAGATGCCTCCCTTCTGGGGCAGGCCATTCTCGGAAGTTCATCTGCACCCGGACAGGGACTTCTGGTCAACACCTGGATGGGAGACCTGCCCAAAACAGGAGGGAAAGGACTTGA]




>consensus_1643#1
TGTTGGCAACTTGCCTGGCACAGGAGCCTGAGTCCATGCAGGAGGGCACCTCTTCTGACT
GGAGAGCTGTCTGTGTCCACACAAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTAC
GATGCCCTGGGACAGCGGATCCGCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTC
ACCTTTGATGCTCTCCTGCACTTCCGAAAGGGCATCATGTACGAGATTAACAGAAAGAAT
AAGACATGCAAGAAGGCGCCGCTGAAGACCGACTTCCAGCCCATGTCTGTCCCAAAAGAT
GCCTCCCTTCTGGGGCAGGCCATTCTCGGAAGTTCATCTGCACCCGGACAGGGACTTCTG
GTCAACACCTGGATGGGAGACCTGCCCAAAACAGGAGGGAAAGGACTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1643#0      TGAAAAAAAAATGAAAGTTTTCCTGGCGTTAACTGCTTTGCTGGCAACTTGCCTGGCACA 60
consensus_1643#1      --------------------------------------TGTTGGCAACTTGCCTGGCACA 22
                                                            ** *******************

consensus_1643#0      GGAGCCTCA-TCCATGCAGGAGTCCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACAC 119
consensus_1643#1      GGAGCCTGAGTCCATGCAGGAGGGCACCTCTTCTGACTGGAGAGCTGTCTGTGTCCACAC 82
                      ******* * ************  ************************************

consensus_1643#0      AAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCC 179
consensus_1643#1      AAAATGAGAAGCTGTGGATGTTTGCGCGGTACGAGTACGATGCCCTGGGACAGCGGATCC 142
                      ************************************************************

consensus_1643#0      GCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACT 239
consensus_1643#1      GCATCATGGAGTTCGGCACCTATGAGAACAAAACCTTCACCTTTGATGCTCTCCTGCACT 202
                      ************************************************************

consensus_1643#0      TCCGAAAGGTGGTCCTAGGAGATCTATGACTCCTGGAATTGTCTTATCCAAAGAAAGCAC 299
consensus_1643#1      TCCGAAAGGGCATCATGTACGAGAT-TAACAGAAAGAATAAGAC-ATGCAA-GAAGGCGC 259
                      *********   ** *    **  * * **     ****      ** *** *** ** *

consensus_1643#0      ACGTTTGGTGTGATATTTCAGTGTTAGAGCGCTTAATTTGTTTGATTATTTATTGTTTGT 359
consensus_1643#1      -CGCTGAAGACCGACTTCCAGCCCATGTCTGTCCCAAAAGATGCCTCCCTTCTGGGGCAG 318
                       ** *          ** ***     *   *    *   * *   *   ** * *     

consensus_1643#0      CCCATAGTT--AATGTCTTTTAAACCTGCTCCTGCAGTTTTTATGAGCTCCTTTGAAAAA 417
consensus_1643#1      GCCATTCTCGGAAGTTCATCTGCACCCGGACAGGGACTTCTGGTCAACACCTG-GATGGG 377
                       ****  *   **  ** * *  *** *  *  * * ** *  * * * ***  **    

consensus_1643#0      AGGCGCAGTAAAAACGGTGAACAAGTCCAAGTAAGATAAGCATTAAAGGCACCCAAAGCG 477
consensus_1643#1      AGACCTGCCCAAAACAG-GAGGGAAAGGACTTGA-------------------------- 410
                      ** *      ***** * **   *    *  * *                          

consensus_1643#0      TACTGTGTTTTATTAGTAAGACAAGGAACTGGGCCATGGCTGCACTCTAAAACTCTCGTT 537
consensus_1643#1      ------------------------------------------------------------
                                                                                  

consensus_1643#0      ATTTTTTAGGGCATCATGTACGAGATTAACAGAAAGAATAAGACATGCAA 587
consensus_1643#1      --------------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)