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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 783 fasta sequence
[TTTCCACTTCCTTCAGAGGATTAGAGATGAGGAGGCTGTGTGGGGAGAACTGTCGCAGATAGCTGTGAGACAGCAGAGAGGGAGCTGAAGGGAGGTGTCTGAAGGAAGTCGATGTTTGTAGAAACATCTCTTGGTGGGCACCGCTCATCTGTCACCCGGACCCTGGACTGTCTGCTTTGACTCACAGAGTGGGAGGGAGATAGCTGATCAGCTTCCTTGGATTTCGCTGACAAATTCACTTTGTTTTGCCTGAAAATGGAAACGCTGGAGTCGGAGCTGACCTGTCCAATCTGTCTGGAGCTATTTGAGGACCCGCTGCTCTTGCCCTGCGCTCACAGCCTTTGTTTCAACTGCGCCCACCGCATCCTGGTGTCACACTGCACGCCCAGGGAGCCCATCCAATCCATCAGCGCCTTCCAGTGCCCGACCTGCCGCTATGTCATCACCCTCAACCAGAGGGGCCTAGAGGGACTCAAACGCAACGTTACGCTGCAGAACATCATTGACCGTTACCAGAAGGCATCGCAAAGCGGACCCAACTCTCCCAAAGAGACGCGGCGCGAGGGAGCCGTCCCCGACAGCAGAGCCATGACGTCACCCGGCGACAGGGTGCCGTGTCAGTTCTGTGAGCAGGATCCTCCTCAGGATGCCGTGAAGACCTGCATCACCTGCGAGGTGTCCTACTGCGACGAGTGTCTCAAGGCCACCCACCCCAACAAGAAGCCGTTCACGGGTCACCGCCTCATGGAGCCTCTGCTGGACTCCCATCTGCGGGGGATAATG]
[+] EMBL CA591274 [TTTCCACTTCCTTCAGAGGATTAGAGATGAGGAGGCTGTGTGGGGAGAACTGTCGCAGATAGCTGTGAGACAGCAGAGAGGGAGCTGAAGGGAGGTGTCTGAAGGAAGTCGATGTTTGTAGAAACATCTCTTGGTGGGCACCGCTCATCTGTCACCCGGACCCTGGACTGTCTGCTTTGACTCACAGAGTGACTGGGAGATAGCTGATCAGCTTCCTTGGATTTCGCTGACAAATTCACTTTGTTTTGCCTGAAAATGGAAACGCTGGAGTCGGAGCTGACCTGTCCAATCTGTCTGGAGCTATTTGAGGACCCGCTGCTCTTGCCCTGCGCTCACAGCCTTTGTTTCAACTGCGCCCACCGCATCCTGGTGTCACACTGCACGCCCAGGGAGCCCATCCAATCCATCAGCGCCTTCCAGTGCCCGACCTGCCGCTATGTCATCACCCTCAACCAGAGGGGCCTAGAGGGACTCAAACGCAACGTTACGCTGCAGAACATCATTGACCGTTACCAGAAGGCATCGCAAAGCGGACCCAACTCTCCCAAAGAGACGCGGCGCGAGGGAGCCGTCCCCGACAGCAGAGCCATGACGTCA ]
[+] EMBL CA589046 [ GGAAGCAGATAGCTGATCAGCTTCCTTGGATTTCGCTGACAAATTCACTTTGTTTTGCCTGAAAATGGAAACGCTGGAGTCGGAGCTGACCTGTCCAATCTGTCTGGAGCTATTTGAGGACCCGCTGCTCTTGCCCTGCGCTCACAGCCTTTGTTTCAACTGCGCCCACCGCATCCTGGTGTCACACTGCACGCCCAGCGAGCCCATCCAATCCATCAGCGCCTTCCAGTGCCCGACCTGCCGCTATGTCATCACCCTCAACCAGAGGGGCCTAGAGGGACTCAAACGCAACGTTACGCTGCAGAACATCATTGACCGTTACCAGAAGGCATCGCAAAGCGGACCCAACTCTCCCAAAGAGACGCGGCGCGAGGGAGCCGTCCCCGACAGCAGAGCCATGACGTCACCCGGCGACAGGGTGCCGTGTCAGTTCTGTGAGCAGGATCCTCCTCAGGATGCCGTGAAGACCTGCATCACCTGCGAGGTGTCCTACTGCGACGAGTGTCTCAAGGCCACCCACCCCAACAAGAAGCCGTTCACGGGTCACCGCCTCATGGAGCCTCTGCTGGACTCCCATCTGCGGGGGATAATG]
consensusID : consensus_1719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[TTACTCAACAGGGCAGAGACACATACCAGCGGAGCCATGGGGAAGCAGATAGCTGATCAGCTTCCTTGGATTTCGCTGACAAATTCACTTTGTTTTGCCTGAAAATGGAAACGCTGGAGTCGGAGCTGACCTGTCCAATCTGTCTGGAGCTATTTGAGGACCCGCTGCTCTTGCCCTGCGCTCACAGCCTTTGTTTCAACTGCGCCCACCGCATCCTGGTGTCACACTGCACGCCCAGCGAGCCCATCCAATCCATCAGCGCCTTCCAGTGCCCGACCTGCCGCTATGTCATCACCCTCAACCAGAGGGGCCTAGAGGGACTCAAACGCAACGTTACGCTGCAGAACATCATTGACCGTTACCAGAAGGCATCGCAAAGCGGACCCAACTCTCCCAAAGAGACGCGGCGCGAGGGAGCCGTCCCCGACAGCAGAGCCATGACGTCACCCGGCGACAGGGTGCCGTGTCAGTTCTGTGAGCAGGATCCTCCTCAGGATGCCGTGAAGACCTGCATCACCTGCGAGGTGTCCTACTGCGACGAGTGTCTCAAGGCCACCCACCCCAACAAGAAGCCGTTCACAGGTCACCGCCTCATGGAGCCTCTGCTGG]
[+] EMBL BU806933 [TTACTCAACAGGGCAGAGACACATACCAGCGGAGCCATGGGGAAGCAGATAGCTGATCAGCTTCCTTGGATTTCGCTGACAAATTCACTTTGTTTTGCCTGAAAATGGAAACGCTGGAGTCGGAGCTGACCTGTCCAATCTGTCTGGAGCTATTTGAGGACCCGCTGCTCTTGCCCTGCGCTCACAGCCTTTGTTTCAACTGCGCCCACCGCATCCTGGTGTCACACTGCACGCCCAGCGAGCCCATCCAATCCATCAGCGCCTTCCAGTGCCCGACCTGCCGCTATGTCATCACCCTCAACCAGAGGGGCCTAGAGGGACTCAAACGCAACGTTACGCTGCAGAACATCATTGACCGTTACCAGAAGGCATCGCAAAGCGGACCCAACTCTCCCAAAGAGACGCGGCGCGAGGGAGCCGTCCCCGACAGCAGAGCCATGACGTCACCCGGCGACAGGGTGCCGTGTCAGTTCTGTGAGCAGGATCCTCCTCAGGATGCCGTGAAGACCTGCATCACCTGCGAGGTGTCCTACTGCGACGAGTGTCTCAAGGCCACCCACCCCAACAAGAAGCCGTTCACAGGTCACCGCCTCATGGAGCCTCTGCTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1719#0 TTTCCACTTCCTTCAGAGGATTAGAGATGAGGAGGCTGTGTGGGGAGAACTGTCGCAGAT 60
consensus_1719#1 ------------------------------------------------------------
consensus_1719#0 AGCTGTGAGACAGCAGAGAGGGAGCTGAAGGGAGGTGTCTGAAGGAAGTCGATGTTTGTA 120
consensus_1719#1 ------------------------------------------------------------
consensus_1719#0 GAAACATCTCTTGGTGGGCACCGCTCATCTGTCACCCGGACCCTGGACTGTCTGCTTTGA 180
consensus_1719#1 ---------------------------TTACTCAACAGGGCAGAGACACATACCAGCGGA 33
* *** * ** * * * **
consensus_1719#0 CTCACAGAGTGGGAGGGAGATAGCTGATCAGCTTCCTTGGATTTCGCTGACAAATTCACT 240
consensus_1719#1 GCCATGG----GGAAGCAGATAGCTGATCAGCTTCCTTGGATTTCGCTGACAAATTCACT 89
** * *** * *******************************************
consensus_1719#0 TTGTTTTGCCTGAAAATGGAAACGCTGGAGTCGGAGCTGACCTGTCCAATCTGTCTGGAG 300
consensus_1719#1 TTGTTTTGCCTGAAAATGGAAACGCTGGAGTCGGAGCTGACCTGTCCAATCTGTCTGGAG 149
************************************************************
consensus_1719#0 CTATTTGAGGACCCGCTGCTCTTGCCCTGCGCTCACAGCCTTTGTTTCAACTGCGCCCAC 360
consensus_1719#1 CTATTTGAGGACCCGCTGCTCTTGCCCTGCGCTCACAGCCTTTGTTTCAACTGCGCCCAC 209
************************************************************
consensus_1719#0 CGCATCCTGGTGTCACACTGCACGCCCAGGGAGCCCATCCAATCCATCAGCGCCTTCCAG 420
consensus_1719#1 CGCATCCTGGTGTCACACTGCACGCCCAGCGAGCCCATCCAATCCATCAGCGCCTTCCAG 269
***************************** ******************************
consensus_1719#0 TGCCCGACCTGCCGCTATGTCATCACCCTCAACCAGAGGGGCCTAGAGGGACTCAAACGC 480
consensus_1719#1 TGCCCGACCTGCCGCTATGTCATCACCCTCAACCAGAGGGGCCTAGAGGGACTCAAACGC 329
************************************************************
consensus_1719#0 AACGTTACGCTGCAGAACATCATTGACCGTTACCAGAAGGCATCGCAAAGCGGACCCAAC 540
consensus_1719#1 AACGTTACGCTGCAGAACATCATTGACCGTTACCAGAAGGCATCGCAAAGCGGACCCAAC 389
************************************************************
consensus_1719#0 TCTCCCAAAGAGACGCGGCGCGAGGGAGCCGTCCCCGACAGCAGAGCCATGACGTCACCC 600
consensus_1719#1 TCTCCCAAAGAGACGCGGCGCGAGGGAGCCGTCCCCGACAGCAGAGCCATGACGTCACCC 449
************************************************************
consensus_1719#0 GGCGACAGGGTGCCGTGTCAGTTCTGTGAGCAGGATCCTCCTCAGGATGCCGTGAAGACC 660
consensus_1719#1 GGCGACAGGGTGCCGTGTCAGTTCTGTGAGCAGGATCCTCCTCAGGATGCCGTGAAGACC 509
************************************************************
consensus_1719#0 TGCATCACCTGCGAGGTGTCCTACTGCGACGAGTGTCTCAAGGCCACCCACCCCAACAAG 720
consensus_1719#1 TGCATCACCTGCGAGGTGTCCTACTGCGACGAGTGTCTCAAGGCCACCCACCCCAACAAG 569
************************************************************
consensus_1719#0 AAGCCGTTCACGGGTCACCGCCTCATGGAGCCTCTGCTGGACTCCCATCTGCGGGGGATA 780
consensus_1719#1 AAGCCGTTCACAGGTCACCGCCTCATGGAGCCTCTGCTGG-------------------- 609
*********** ****************************
consensus_1719#0 ATG 783
consensus_1719#1 ---
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |