These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1736#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 645 fasta sequence [GTCTTCTCAGAAAGCCTCACCTTTGTTATTTTGGGGGAAAACGCGCAGATTTGTATTCTGTGGGGCCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTAATGTGCGCTTCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAGCAGGGTTTACAGTGTATCACTTCCACAACTAACTGTTGGGACAGTGACCTGCGTCCTCACCAGTACACTCCCAGTGGTCCAGAGGAGCTTCATGTGACTGTGGACTTCAGGCGGGACAGGAGAAGACAACTGCAGCCTGTCTTGCACATCAGCTGGAAGTTAAAGGACGACGGGAGCATTCACTTTCTCAACGCCACTGAGCTTCATGTCCTAGAAGCATCCACCAACCAGAACTTGTGTGTCCGATACTCATTCAAAGACAAGCTGCCCATGAGAAGTCCAGCAAAAGAGATGTGGTCGTTCTCAGCTGACGTAGTTGTCAACCCGGATCAGATCTACACGGTCTCTGTCTACAACATCCCCAAACCAGAGTTCAACCACAACAACTATAAGGTCGACACACTTGTCAGAGGTTCTGGGTGNTAAGAGAAGACTATGAAACACACACAAGTCTGCATGGAACAAGGGAGTNTN] [+] EMBL FR0058362 [GTCTTCTCAGAAAGCCTCACCTTTGTTATTTTGGGGGAAAACGCGCAGATTTGTATTCTGTGGGGCCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTAATGTGCGCTTCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAGCAGGGTTTACAGTGTATCACTTCCACAACTAACTGTTGGGACAGTGACCTGCGTCCTCACCAGTACACTCCCAGTGGTCCAGAGGAGCTTCATGTGACTGTGGACTTCAGGCGGGACAGGAGAAGACAACTGCAGCCTGTCTTGCACATCAGCTGTTAGTTAAAGGACGACGGGAGCATTCAC ] [+] EMBL CA588258 [ AGCAGGGTTTACAGTGTATCACTTCCACAACTAACTGTTGGGACAGTGACCTGCGTCCTCACCAGTACACTCCCAGTGGTCCAGAGGAGCTTCATGTGACTGTGGACTTCAGGCGGGACAGGAGAAGACAACTGCAGCCTGTCTTGCACATTTTTTGGAAGTTAAAGGACGACGGTAGTATTCACTTTCTCAACGCCACTGAGCTTCATGTCCTAGAAGCATCCACCAACCAGAACTTGTGTGTCCGATACTCATTCAAAGACAAGCTGCCCATGAGAAGTCCAGCAAAAGAGATGTGGTCGTTCTCAGCTGACGTAGTTGTCAACCCGGATCAGATCTACACGGTCTCTGTCTACAACATCCCCAAACCAGAGTTCAACCACAACAACTATAAGGTCGACACACTTGTCAGAGGTTCTGGGTGNTAAGAGAAGACTATGAAACACACACAAGTCTGCATGGAACAAGGGAGTNTN] consensusID : consensus_1736#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence [TGGGTTAACGTCTTCTCAGAAAGCCTCACCTTTGTTATTTTAAAGGAAAACGCGCAGATTTGTATTCTGTGGGGTCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTAATGTGCGCTTCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAGCAGGGTTTACAGTGTATCACTTCCACAAGTGAGTCAACTTTGACCTTCATCATTGTCATAAATATGTAGGACCAAGTCTTCCANAGTGTGTGCGTCTGTGCGTGTGTGTGTCTGTAGCTAACTGTTGGGACAGTGACCTGCG] [+] EMBL FR0058151 [TGGGTTAACGTCTTCTCAGAAAGCCTCACCTTTGTTATTTTAAAGGAAAACGCGCAGATTTGTATTCTGTGGGGTCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTAATGTGCGCTTCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAGCAGGGTTTACAGTGTATCACTTCCACAAGTGAGTCAACTTTGACCTTCATCATTGTCATAAATATGTAGGACCAAGTCTTCCANAGTGTGTGCGTCTGTGCGTGTGTGTGTCTGTAGCTAACTGTTGGGACAGTGACCTGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1736#0 ---------GTCTTCTCAGAAAGCCTCACCTTTGTTATTTTGGGGGAAAACGCGCAGATT 51 consensus_1736#1 TGGGTTAACGTCTTCTCAGAAAGCCTCACCTTTGTTATTTTAAAGGAAAACGCGCAGATT 60 ******************************** **************** consensus_1736#0 TGTATTCTGTGGGGCCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTA 111 consensus_1736#1 TGTATTCTGTGGGGTCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTA 120 ************** ********************************************* consensus_1736#0 ATGTGCGCTTCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAG 171 consensus_1736#1 ATGTGCGCTTCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAG 180 ************************************************************ consensus_1736#0 CAGGGTTTACAGTGTATCACTTCCACAACTAACT--GTTGGGACAGTGACCTGCGTCCTC 229 consensus_1736#1 CAGGGTTTACAGTGTATCACTTCCACAAGTGAGTCAACTTTGACCTTCATCATTGTCATA 240 **************************** * * * * *** * * * *** * consensus_1736#0 ACCAGTACACTCCCAGTGGTCCAGAGGAGCTTCATGTGACTGTGGACTTCAGGCGGGACA 289 consensus_1736#1 AATATGTAGGACCAAGTCTTCCANAG----TGTGTGCGTCTGTGCGTGT---GTGTGTCT 293 * * ** *** **** ** * ** * ***** * * * * * consensus_1736#0 GGAGAAGACAACTGCAGCC-TGTCTTGCACATCAGCTGGAAGTTAAAGGACGACGGGAGC 348 consensus_1736#1 GTAGCTAACTGTTGGGACAGTGACCTGCG------------------------------- 322 * ** ** ** * ** * *** consensus_1736#0 ATTCACTTTCTCAACGCCACTGAGCTTCATGTCCTAGAAGCATCCACCAACCAGAACTTG 408 consensus_1736#1 ------------------------------------------------------------ consensus_1736#0 TGTGTCCGATACTCATTCAAAGACAAGCTGCCCATGAGAAGTCCAGCAAAAGAGATGTGG 468 consensus_1736#1 ------------------------------------------------------------ consensus_1736#0 TCGTTCTCAGCTGACGTAGTTGTCAACCCGGATCAGATCTACACGGTCTCTGTCTACAAC 528 consensus_1736#1 ------------------------------------------------------------ consensus_1736#0 ATCCCCAAACCAGAGTTCAACCACAACAACTATAAGGTCGACACACTTGTCAGAGGTTCT 588 consensus_1736#1 ------------------------------------------------------------ consensus_1736#0 GGGTGNTAAGAGAAGACTATGAAACACACACAAGTCTGCATGGAACAAGGGAGTNTN 645 consensus_1736#1 --------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |