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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_178#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence
[GGTGAGAAGCGTCTTTATTAAATGTCTTCTGTGGAGTTCAGTTCCTGACACGTTTGTCATGAGCCACATCACGGCCCAGGACAGGAGACGGTGAGCTGGTGCACATGATTCAACAATGGTGACACAAGGAGCTTCCAAAAAACCTTTAGACAAGCACGATCACTGACTAATCACTGACTAATCACTGACTAATTACTGTATTTACATGAACATCTGAAGATCTAGAGATCAAACACACAAAGACCACATGATGTCGGTTAGAGTTACTGATCGTTTGTTCGCTGACGAATGTTGGCTCCAAAAGGAGGGTTCTGCAGCTTCTAGGGGGCCGATCTGGACTGGGACTCCCCTTCATCCGGGCTCGGGCCTGACATTTGCACAAAGAGCTCCCTCAGCTCGCTGATGTCATCAGCAAAGGCCTGCAGCGGGGGGGCCGAATGCTGCTCGCGCTCTTCGATGAAATCCCACAGACGCACGCTGTTCATGAACCGGATATTTCCCTCGGAGCCCAGCTGTTTCCGGGGCTGCTCGGGCTCAGCTCGACTTCCATAGGGTTTCTTCCCGACTCCAGACTTGAACAGTTCGATGAGGGGATCTTT]
[+] EMBL CA331896 [GGTGAGAAGCGTCTTTATTAAATGTCTTCTGTGGAGTTCAGTTCCTGACACGTTTGTCATGAGCCACATCACGGCCCAGGACAGGAGACGGTGAGCTGGTGCACATGATTCAACAATGGTGACACAAGGAGCTTCCAAAAAACCTTTAGACAAGCACGATCACTGACTAATCACTGACTAATCACTGACTAATTACTGTATTTACATGAACATCTGAAGATCTAGAGATCAAACACACAAAGACCACATGATGTCGGTTAGAGTTACTGATCGTTTGTTCGCTGACGAATGTTGGCTCCAAAAGGAGGGTTCTGCAGCTTCTAGGGGGCCGATCTGGACTGGGACTCCCCTTCATCCGGGCTCGGGCCTGACATTTGCACAAAGAGCTCCCTCAGCTCGCTGATGTCATCAGCAAAGGCCTGCAGCGGGGGGGCCGAATGCTGCTCGCGCTCTTCGATGAAATCCCACAGACGCACGCTGTTCATGAACCGGATATTTCCCTCGGAGCCCAGCTGTTTCCGGGGCTGCTCGGGCTCAGCTCGACTTCCATAGGGTTTCTTCCCGACTCCAGACTTGAACAGTTCGATGAGGGGATCTTT]
consensusID : consensus_178#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence
[GAGAAGCGTCTTTATTAAATGTCTTCTGTGGAGTTCAGTTCCTGACACGTTTGTCATGAGCCACATCACGGCCCAGGACAGGAGACGGTGAGCTGGTGCACATGATTCAACAATGGTGACACAAGGAGCTTCCAAAAAACCTTTAGACAAGCACGATCACTGACTAATCACTGACTAATCACTGACTAATTACTGTATTTACATGAACATCTGAAGATCTAGAGATCAAACACACAAAGACCACATGATGTCGGTTAGAGTTACTGATCGTTTGTTCGCTGACGAATGTTGGCTCCAAAAGGAGGGTTCTGCAGCTTCTAGGGGGCCGATCTGGACTGGGACTCCCCTTCATCCGGGCTCGGGCCTGACATTTGCACAAAGAGCTCCCTCAGCTCGCTGATGTCATCAGCAAAGGCCTGCAGCGGGGGGGCCGAATGCTGCTCGCGCTCTTCGATGAAATCCCACAGACGCACGCTGTTCATGAACCGGATATTTCCCTCGGAGCCCAGCTGTTTCCGGGGCTGCTCGGGCTCAGCTCGACTTCCATCTGGGAGGGCATGAAG]
[+] EMBL CA329554 [GAGAAGCGTCTTTATTAAATGTCTTCTGTGGAGTTCAGTTCCTGACACGTTTGTCATGAGCCACATCACGGCCCAGGACAGGAGACGGTGAGCTGGTGCACATGATTCAACAATGGTGACACAAGGAGCTTCCAAAAAACCTTTAGACAAGCACGATCACTGACTAATCACTGACTAATCACTGACTAATTACTGTATTTACATGAACATCTGAAGATCTAGAGATCAAACACACAAAGACCACATGATGTCGGTTAGAGTTACTGATCGTTTGTTCGCTGACGAATGTTGGCTCCAAAAGGAGGGTTCTGCAGCTTCTAGGGGGCCGATCTGGACTGGGACTCCCCTTCATCCGGGCTCGGGCCTGACATTTGCACAAAGAGCTCCCTCAGCTCGCTGATGTCATCAGCAAAGGCCTGCAGCGGGGGGGCCGAATGCTGCTCGCGCTCTTCGATGAAATCCCACAGACGCACGCTGTTCATGAACCGGATATTTCCCTCGGAGCCCAGCTGTTTCCGGGGCTGCTCGGGCTCAGCTCGACTTCCATCTGGGAGGGCATGAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_178#0 GGTGAGAAGCGTCTTTATTAAATGTCTTCTGTGGAGTTCAGTTCCTGACACGTTTGTCAT 60
consensus_178#1 ---GAGAAGCGTCTTTATTAAATGTCTTCTGTGGAGTTCAGTTCCTGACACGTTTGTCAT 57
*********************************************************
consensus_178#0 GAGCCACATCACGGCCCAGGACAGGAGACGGTGAGCTGGTGCACATGATTCAACAATGGT 120
consensus_178#1 GAGCCACATCACGGCCCAGGACAGGAGACGGTGAGCTGGTGCACATGATTCAACAATGGT 117
************************************************************
consensus_178#0 GACACAAGGAGCTTCCAAAAAACCTTTAGACAAGCACGATCACTGACTAATCACTGACTA 180
consensus_178#1 GACACAAGGAGCTTCCAAAAAACCTTTAGACAAGCACGATCACTGACTAATCACTGACTA 177
************************************************************
consensus_178#0 ATCACTGACTAATTACTGTATTTACATGAACATCTGAAGATCTAGAGATCAAACACACAA 240
consensus_178#1 ATCACTGACTAATTACTGTATTTACATGAACATCTGAAGATCTAGAGATCAAACACACAA 237
************************************************************
consensus_178#0 AGACCACATGATGTCGGTTAGAGTTACTGATCGTTTGTTCGCTGACGAATGTTGGCTCCA 300
consensus_178#1 AGACCACATGATGTCGGTTAGAGTTACTGATCGTTTGTTCGCTGACGAATGTTGGCTCCA 297
************************************************************
consensus_178#0 AAAGGAGGGTTCTGCAGCTTCTAGGGGGCCGATCTGGACTGGGACTCCCCTTCATCCGGG 360
consensus_178#1 AAAGGAGGGTTCTGCAGCTTCTAGGGGGCCGATCTGGACTGGGACTCCCCTTCATCCGGG 357
************************************************************
consensus_178#0 CTCGGGCCTGACATTTGCACAAAGAGCTCCCTCAGCTCGCTGATGTCATCAGCAAAGGCC 420
consensus_178#1 CTCGGGCCTGACATTTGCACAAAGAGCTCCCTCAGCTCGCTGATGTCATCAGCAAAGGCC 417
************************************************************
consensus_178#0 TGCAGCGGGGGGGCCGAATGCTGCTCGCGCTCTTCGATGAAATCCCACAGACGCACGCTG 480
consensus_178#1 TGCAGCGGGGGGGCCGAATGCTGCTCGCGCTCTTCGATGAAATCCCACAGACGCACGCTG 477
************************************************************
consensus_178#0 TTCATGAACCGGATATTTCCCTCGGAGCCCAGCTGTTTCCGGGGCTGCTCGGGCTCAGCT 540
consensus_178#1 TTCATGAACCGGATATTTCCCTCGGAGCCCAGCTGTTTCCGGGGCTGCTCGGGCTCAGCT 537
************************************************************
consensus_178#0 CGACTTCCATAGGGTTTCTTCCCGACTCCAGACTTGAACAGTTCGATGAGGGGATCTTT 599
consensus_178#1 CGACTTCCATCTGGGAGGGCATGAAG--------------------------------- 563
********** ** *
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |