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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1791#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 721 fasta sequence
[TCTCTGACGGCAGCAAGTTACTGCCTGGTGGTGCCAACGCCCGGCGAAGGGAACAGCTAGCATAAATTAGCGGATATACGAAGTGATACTGCAAACGGCCATACGAAGCACAGAGATGCAGACTATCAAATGTGTTGTTGTGGGTGATGGAGCGGTGGGAAAAACCTGCTTATTGATCTCATACACCACCAACAAGTTCCCTTCTGAATATGTCCCCACAGTTTTTGACAACTATGCAGTAACTGTAATGATTGGGGGTGAACCCTACACCCTGGGCCTCTTCGATACAGCCGGTCAGGAGGATTACGACCGGTTACGGCCACTAAGCTACCCACAGACAGATGTGTTCTTAGTCTGTTTCTCAGTCGTTTCCCCTTCATCGTTTGAGAACGTTAAGGAAAAGTGGGTGCCTGAAATAACTCACCACTGCCCCAAGACCCCCTTCCTGTTGGTGGGCACTCAGATCGACCTGCGCGACGATCCCTCCACCGTCGAGAAGCTCGCCAAGAACAAACAGAAGCCCATCACACCCGAGACGGCGGAAAAGCTGGCTCGCGATCTCAAGGCGGTAAAATACGTGGAGTGCTCCGCCCTAACGCAGCGGGGACTGAAGAACGTATTTGACGAGGCTATTTTAGCCGCGTTAGAGCCCCCCGAAACTCAAAGAAAGAGAAAATGCTGTTTGTTCTGATGTCGTCCTGCGTCTCGCTTTGCCTCTAAC]
[+] EMBL CA330013 [TCTCTGACGGCAGCAAGTTACTGCCTGGTGGTGCCAACGCCCGGCGAAGGGAACAGCTAGCATAAATTAGCGGATATACGAAGTGATACTGCAAACGGCCATTCGAAGCACAGAGATGCAGACTATCAAATGTGTTGTTGTGGGTGATGGAGCGGTGGGAAAAACCTGCTTATTGATCTCATACACCACCAACAAGTTCCCTTCTGAATATGTCCCCACAGTTTTTGACAACTATGCAGTAACTGTAATGATTGGGGGTGAACCCTACACCCTGGGCCTCTTCGATACAGCCGGTCAGGAGGATTACGACCGGTTACGGCCACTAAGCTACCCACAGACAGATGTGTTCTTAGTCTGTTTCTCAGTCGTTTCCCCTTCATCGTTTGAGAACGTTAAGGAAAAGTGGGTGCCTGAAATAACTCACCACTGCCCCAAGACCCCCTTCCTGTTGGTGGGCACTCAGATCGACCTGCGCGACGATCCCTCCACCGTCGAGAAGCTCGCCAAGAACAAACAGAAGCCCATCACACCCGAGACGGCGGAAAAGCTGGCTCGCGATCTCAAGGCGGTAAAATACGTGGAGTGCTCCGCCCTA ]
[+] EMBL CA590766 [ CATACGAAGCACAGAGATGCAGACTATCAAATGTGTTGTTGTGGGTGATGGAGCGGTGGGAAAAACCTGCTTATTGATCTCATACACCACCAACAAGTTCCCTTCTGAATATGTCCCCACAGTTTTTGACAACTATGCAGTAACTGTAATGATTGGGGGTGAACCCTACACCCTGGGCCTCTTCGATACAGCCGGTCAGGAGGATTACGACCGGTTACGGCCACTAAGCTACCCACAGACAGATGTGTTCTTAGTCTGTTTCTCAGTCGTTTCCCCTTCTTCGTTTGAGAACGTTAAGGAAAAGTGGGTGCCTGAAATAACTCACCACTGCCCCAAGACCCCCTTCCTGTTGGTGGGCACTCAGATCGACCTGCGCGACGATCCCTCCACCGTCGAGAAGCTCGCCAAGAACAAACAGAAGCCCATCACACCCGAGACGGCGGAAAAGCTGGCTCGCGATCTCAAGGCGGTAAAATACGTGGAGTGCTCCGCCCTAACGCAGCGGGGACTGAAGAACGTATTTGACGAGGCTATTTTAGCCGCGTTAGAGCCCCCCGAAACTCAAAGAAAGAGAAAATGCTGTTTGTTCTGATGTCGTCCTGCGTCTCGCTTTGCCTCTAAC]
consensusID : consensus_1791#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence
[AGGGAACAGCTAGCATAAATTAGCGGATATACGAAGTGATACTGCAAACGGCCATTCGAAGCACAGAGATGCAGACTATCAAATGTGTTGTTGTGGGTGATGGAGCGGTGGGAAAAACCTGCTTATTGATCTCATACACCACCAACAAGTTCCCTTCTGAATATGTCCCCACAGTTTTTGACCACTATGCAGTAACTGTAATGATTGGGGGTGAACCCTACACCCTGGGCCTCTTCGATACAGCCGGTCAAGAAGATTACCACCGGGTACCGCCACTTAGCTACCCCCAAACAGATGGGGTCCTAATCCTGTTCTCAGTCCGTTCCCCCTCTTCCTTTGAGAAACTTTAAGGAAAATGGGTGCCTGAAATAACTCCCCACTGGGCCCAGAACCCCCTTTCCGTTGGGGGGGCACTCAAATCGAACTTGGGCGAAGAATCCCCCCCCCGTCGAGAAAGTCGCCCAGAACCAACCAGAAGCCCCTTCCCCCCAAGACCGCGGGAAAAACTTGTGTCCCGATATCCAGGGGGGAAAAAAACCGGGAGTGCTTCCCCCCTAACCCCGAAAAGGTTTTAAAAATATCCTTTTATGGAAGGAATACTCGGTGTGCCTCTAGACCCTCCTGGACCT]
[+] EMBL BU806529 [AGGGAACAGCTAGCATAAATTAGCGGATATACGAAGTGATACTGCAAACGGCCATTCGAAGCACAGAGATGCAGACTATCAAATGTGTTGTTGTGGGTGATGGAGCGGTGGGAAAAACCTGCTTATTGATCTCATACACCACCAACAAGTTCCCTTCTGAATATGTCCCCACAGTTTTTGACCACTATGCAGTAACTGTAATGATTGGGGGTGAACCCTACACCCTGGGCCTCTTCGATACAGCCGGTCAAGAAGATTACCACCGGGTACCGCCACTTAGCTACCCCCAAACAGATGGGGTCCTAATCCTGTTCTCAGTCCGTTCCCCCTCTTCCTTTGAGAAACTTTAAGGAAAATGGGTGCCTGAAATAACTCCCCACTGGGCCCAGAACCCCCTTTCCGTTGGGGGGGCACTCAAATCGAACTTGGGCGAAGAATCCCCCCCCCGTCGAGAAAGTCGCCCAGAACCAACCAGAAGCCCCTTCCCCCCAAGACCGCGGGAAAAACTTGTGTCCCGATATCCAGGGGGGAAAAAAACCGGGAGTGCTTCCCCCCTAACCCCGAAAAGGTTTTAAAAATATCCTTTTATGGAAGGAATACTCGGTGTGCCTCTAGACCCTCCTGGACCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1791#0 TCTCTGACGGCAGCAAGTTACTGCCTGGTGGTGCCAACGCCCGGCGAAGGGAACAGCTAG 60
consensus_1791#1 -----------------------------------------------AGGGAACAGCTAG 13
*************
consensus_1791#0 CATAAATTAGCGGATATACGAAGTGATACTGCAAACGGCCATACGAAGCACAGAGATGCA 120
consensus_1791#1 CATAAATTAGCGGATATACGAAGTGATACTGCAAACGGCCATTCGAAGCACAGAGATGCA 73
****************************************** *****************
consensus_1791#0 GACTATCAAATGTGTTGTTGTGGGTGATGGAGCGGTGGGAAAAACCTGCTTATTGATCTC 180
consensus_1791#1 GACTATCAAATGTGTTGTTGTGGGTGATGGAGCGGTGGGAAAAACCTGCTTATTGATCTC 133
************************************************************
consensus_1791#0 ATACACCACCAACAAGTTCCCTTCTGAATATGTCCCCACAGTTTTTGACAACTATGCAGT 240
consensus_1791#1 ATACACCACCAACAAGTTCCCTTCTGAATATGTCCCCACAGTTTTTGACCACTATGCAGT 193
************************************************* **********
consensus_1791#0 AACTGTAATGATTGGGGGTGAACCCTACACCCTGGGCCTCTTCGATACAGCCGGTCAGGA 300
consensus_1791#1 AACTGTAATGATTGGGGGTGAACCCTACACCCTGGGCCTCTTCGATACAGCCGGTCAAGA 253
********************************************************* **
consensus_1791#0 GGATTACGACCGGTTACGGCCACTAAGCTACCCACAGACAGATGTGTTCTTAGTCTGTTT 360
consensus_1791#1 AGATTACCACCGGGTACCGCCACTTAGCTACCCCCAAACAGATGGGGTCCTAATCCTGTT 313
****** ***** *** ****** ******** ** ******* * ** ** ** **
consensus_1791#0 CTCAGTCGTTTCCCCTTCATCGTTTGAGAACGTTAAGGAAAAGTGGGTGCCTGAAATAAC 420
consensus_1791#1 CTCAGTCCGTTCCCCCTCTTCCTTTGAGAAACTTTAAGGAAAATGGGTGCCTGAAATAAC 373
******* ****** ** ** ******** ** * * *** *****************
consensus_1791#0 TCACCACTGC-CCCAAGACCCCCTTCCTGTTGGTGGG-CACTCAGATCGA-CCTGCGCGA 477
consensus_1791#1 TCCCCACTGGGCCCAGAACCCCCTTTCCGTTGGGGGGGCACTCAAATCGAACTTGGGCGA 433
** ****** **** ******** * ***** *** ****** ***** * ** ****
consensus_1791#0 CGA-TCCCTCCACCGTCGAGAAGCTCGCCAAGAACAAAC-AGAAGCCCATCACACCCGAG 535
consensus_1791#1 AGAATCCCCCCCCCGTCGAGAAAGTCGCCCAGAACCAACCAGAAGCCCCTTCCCCCCAAG 493
** **** ** ********** ***** ***** *** ******** * * *** **
consensus_1791#0 ACGGCGGAAAAG--CTGGCTCGCGATCTC-AAGGCGGTAAAATACGTGGAGTGCT-CCGC 591
consensus_1791#1 ACCGCGGGAAAAACTTGTGTCCCGATATCCAGGGGGGAAAAAAACCGGGAGTGCTTCCCC 553
** **** *** ** ** **** ** * ** ** **** ** ******** ** *
consensus_1791#0 CCTAACGCAGCGGGGACT---GAAGAACGTATTTGACGAGGCTATTTTAGCCGCGT---T 645
consensus_1791#1 CCTAACCCCGAAAAGGTTTTAAAAATATCCTTTTATGGAAGGAATACTCGGTGTGCCTCT 613
****** * * * * ** * *** ** * ** * * * * *
consensus_1791#0 AGAGCCCCCCGAAACTCAAAGAAAGAGAAAATGCTGTTTGTTCTGATGTCGTCCTGCGTC 705
consensus_1791#1 AGACCCTCCTGGACCT-------------------------------------------- 629
*** ** ** * * **
consensus_1791#0 TCGCTTTGCCTCTAAC 721
consensus_1791#1 ----------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |