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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1820#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 631 fasta sequence
[GACAATAGAGGTGGCAGCCTGGAGCTTGTGGAAAATCAGTTTCAGATTGAGAGACTCTACTCACCGCTTGCTCGGGTCTACAATCTTCAAGAACCTCCACTCATCAGGTGACGTTTGGACCAGTCTCAGCACAATGTGTGCTTACACGGTGAGCGTTGCAACAGGGAGCAACGCTTTCGATGGGACGGATAACTCTGTCTACATTACGTTGGTGGGCACCCTGCACTGCAGCATAAGAACATTGCTGGACAAGCCTCTATACAATGACTTTGCCAGGATGGCGGTGGACACATATGTAATTGACATCAAAGAGGACCTGGGAGAAATCATCATGGTGAAACTTCAGAAGGAGAAGTTCCTGGTGTTTGATGACTGGTACTGCAGGTCCATCACAGGGAAGACCCCCTCTGGACAGTCTGTGGAATTTCCCTGTTTCCGGTGGCTGGTGGATGACAAGGAGGTGGTGCTGCGAGATGGCCGAGCGATCCTTCCTCAGGACGACAAGAGTGCCCCATTGGTGGAACATAGAGAAAAAGAGCTGGGGCTGGGGAGGAAAACCTACAGATGGTCACAGTGGCAACCTGGGTTTCCTATGAGCATCGATGCTGTCCGATACAAAGATTTACCCTGG]
[+] EMBL BU806273 [GACAATAGAGGTGGCAGCCTGGAGCTTGTGGAAAATCAGTTTCAGATTGAGAGACTCTACTCACCGCTTGCTCGGGTCTACAATCTTCAAGAACCTCCACTCATCAGGTGACGTTTGGACCAGTCTCAGCACAATGTCTTCTTACACGGTGAGCGTTGCAACAGGGAGCAACGCTTTCGATGGGACGGATAACTCTGTCTACATTACGTTGGTGGGCACCCTGCACTGCAGCATAAGAACATTGCTGGACAAGCCTCTATACAATGACTTTGCCAGGATGGCGGTGGACACATATGTAATTGACATCAAAGAGGACCTGGGAGAAATCATCATGGTGAAACTTCAGAAGGAGAAGTTCCTGGTGTTTGATGACTGGTACTGCAGGTCCATCACAGTGAAGACCCCCTCTGGACAGTCTGTGGAATTTCCCTGTTTCCGCTGGCTGGTGGATGACAAGGAGGTGGTGCTGCGAGATGGCCGAGCGATCCTTCCTCAGGACGACAAGAGTGCCCCATTGATGGAACATAGAGAAAAAGAGCTGGAGCTGAGGAGGAAAACCTACAGATGGTCACAGTGGCAACCTGGGTTTCCTATGAGCATCGATGCTGTCCGATACAAAGATTTACCCTGG]
[+] EMBL FR0058781 [ TCAGGTGACGTTTGGACCAGTCTCAGCACAATGTGTGCTTACACGGTGAGCGTTG AACAGGGAGCAACGCTTTCGATGGGACGGATAACTCTGTCTACATTACGTTGGTGGGCACCCTGCACTGCAGCATAAGAACATTGCTGGACAAGCCTCTATACAATGACTTTGCCAGGATGGCGGTGGACACATATGTAATTGACATCAAAGAGGACCTGGGAGAAATCATCATGGTGAAACTTCAGAAGGAGAAGTTCCTGGTGTTTGATGACTGGTACTGCAGGTCCATCACAGGGAAGACCCCCTCTGGACAGTCTGTGGAATTTCCCTGTTTCCGGTTGCTGGTGGATGACAAGGAGGTGGTGCTGCGAGATGGCCGAGCGATCCTTCCTTAGGACGACAAGAGTGCCCCATTGGTGGAACATAGAGAAAAAGAGCTTGGGCTTGGG ]
consensusID : consensus_1820#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence
[TTTGCTTTAAATGTTTGAAGTCACAGCTTCCATGATTCTGCAGTCCCCTTACATTTTCAAGAACTCCCTGAAGAAAGAGCGATTATAGAGTTCACCAGTCAGAACCAGTCTCAGCATTATGCCTTCTTACACGGTGACCACTGCCACAAGGAGCAACACTTTCGATGGGACGGATAACTCTGTCTACATTACGTTGGTGGGCACTCTGCAGTGCAGCAGAAGAACATTGCTGGACAAGCCTCTGCACAATGATTTTGCCAGGATGTCGGTGGACACATATGTAATTGACATCAAAGAGGACCTGGGAGAAATCATCATGGTGAAACTTCAGAAGAAGAAGTTCCTGGTGTTTGATGACTGGTACTGCAGGTCCATCACAGTGAAGACCCCCTCTGGACAGTCTGTGGAATTTCCCTGTTTCCGCTGGCTGGTGGATGACAAGG]
[+] EMBL CA588644 [TTTGCTTTAAATGTTTGAAGTCACAGCTTCCATGATTCTGCAGTCCCCTTACATTTTCAAGAACTCCCTGAAGAAAGAGCGATTATAGAGTTCACCAGTCAGAACCAGTCTCAGCATTATGCCTTCTTACACGGTGACCACTGCCACAAGGAGCAACACTTTCGATGGGACGGATAACTCTGTCTACATTACGTTGGTGGGCACTCTGCAGTGCAGCAGAAGAACATTGCTGGACAAGCCTCTGCACAATGATTTTGCCAGGATGTCGGTGGACACATATGTAATTGACATCAAAGAGGACCTGGGAGAAATCATCATGGTGAAACTTCAGAAGAAGAAGTTCCTGGTGTTTGATGACTGGTACTGCAGGTCCATCACAGTGAAGACCCCCTCTGGACAGTCTGTGGAATTTCCCTGTTTCCGCTGGCTGGTGGATGACAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1820#0 GACAATAGAGGTGGCAGCCTGGAGCTTGTGGAAAATCAGTTTCAGATTGAGAGACTCTAC 60
consensus_1820#1 -------------TTTGCTTTAAATGTTTGAAGTCACAGCTTC----CATGATTCTGCAG 43
** * * * ** * *** *** ** ** *
consensus_1820#0 TCACCGCTTGCTCGGGTCTACAATCTTCAAGAACCTCCACTCATCAGGTGAC--GTTTGG 118
consensus_1820#1 TCCCCTTACATTTTCAAGAACTCCCTGAAGAAAGAGCGATTATAGAGTTCACCAGTCAGA 103
** ** * ** ** * ** * * * ** * ** ** *
consensus_1820#0 ACCAGTCTCAGCACAATGTGTGCTTACACGGTGAGCGTTGCAACAGGGAGCAACGCTTTC 178
consensus_1820#1 ACCAGTCTCAGCATTATGCCTTCTTACACGGTGACCACTGCCACAAGGAGCAACACTTTC 163
************* *** * ************ * *** *** ******** *****
consensus_1820#0 GATGGGACGGATAACTCTGTCTACATTACGTTGGTGGGCACCCTGCACTGCAGCATAAGA 238
consensus_1820#1 GATGGGACGGATAACTCTGTCTACATTACGTTGGTGGGCACTCTGCAGTGCAGCAGAAGA 223
***************************************** ***** ******* ****
consensus_1820#0 ACATTGCTGGACAAGCCTCTATACAATGACTTTGCCAGGATGGCGGTGGACACATATGTA 298
consensus_1820#1 ACATTGCTGGACAAGCCTCTGCACAATGATTTTGCCAGGATGTCGGTGGACACATATGTA 283
******************** ******* ************ *****************
consensus_1820#0 ATTGACATCAAAGAGGACCTGGGAGAAATCATCATGGTGAAACTTCAGAAGGAGAAGTTC 358
consensus_1820#1 ATTGACATCAAAGAGGACCTGGGAGAAATCATCATGGTGAAACTTCAGAAGAAGAAGTTC 343
*************************************************** ********
consensus_1820#0 CTGGTGTTTGATGACTGGTACTGCAGGTCCATCACAGGGAAGACCCCCTCTGGACAGTCT 418
consensus_1820#1 CTGGTGTTTGATGACTGGTACTGCAGGTCCATCACAGTGAAGACCCCCTCTGGACAGTCT 403
************************************* **********************
consensus_1820#0 GTGGAATTTCCCTGTTTCCGGTGGCTGGTGGATGACAAGGAGGTGGTGCTGCGAGATGGC 478
consensus_1820#1 GTGGAATTTCCCTGTTTCCGCTGGCTGGTGGATGACAAGG-------------------- 443
******************** *******************
consensus_1820#0 CGAGCGATCCTTCCTCAGGACGACAAGAGTGCCCCATTGGTGGAACATAGAGAAAAAGAG 538
consensus_1820#1 ------------------------------------------------------------
consensus_1820#0 CTGGGGCTGGGGAGGAAAACCTACAGATGGTCACAGTGGCAACCTGGGTTTCCTATGAGC 598
consensus_1820#1 ------------------------------------------------------------
consensus_1820#0 ATCGATGCTGTCCGATACAAAGATTTACCCTGG 631
consensus_1820#1 ---------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |