These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 831 fasta sequence [ACATTGTAAAGAATCGTAAATGTGTTCTGCAAGTAACTTTGTAAACTCGTTGAAGGAGCAAACGGTGGCCAGGCTGTGTTCGGGAGATCCCAGCTGCAGGCGCTCGGCTCTCCTCAAAGATGATTCGCTGCTGGACTTTTACTACGAAGATACCAGGACGTACTACGACATGTTCCAACGAGGACTGCGGATCGCAGGAGGTGGGCCCTGTCTTGGCTTCAGAAAGCCGGGTCAGCCTGGGCCTACGAGTGGATGTCCTACACCGAGGTGGAGCACAAAGCCCAGCTTCTGGGCTCTGGGCTGCTGGCTAAAGGCTGCCAGCCCAACGCACAGCAGTTTGTTGGCATATTCGCACAGAACCGACCGGAGTGGGTCCTCACCGAGCTGGCCTGCTACACCTACTCCATGGCCGTGGTTCCTCTGTACGACACGCTGGGCCTGGAAGCCATGGTCCACATACTGAACCTGGCGGAGATCTCCTTGGTGATTTGTGACAAGGAGGACAAGGCGGCGGCCCTGCTGGAGAACAAAGAGAACGGCACGACTCCAACACTCTCCTGCCTGGTCCTCTTTAATAACTTCACGGAAGGTTTTGCAACGAGGGCGAAGGCCTGTAAGGTGGAAGTTCTAAAGCTGGAGCAGCTTATGGAGCTGGGCAGGCAGAACCTCAAAGATCCTGTGCCGCCCCGGCCTCAGGATCTGGCCGTGGTCTGCTTCACCAGTGGAACCACAGGGAAGCCCAAGGGAGCCATGATCACCCACGGAAACATCGCCTCCAACGCTTCCTCTGTCATTAAGCTCCTGGAGGGATCAGTCGTGATCCAACAGGAG] [+] EMBL CA846175 [ACATTGTAAAGAATCGTAAATGTGTTCTGCAAGTAACTTTGTACCCTCGTTGAAGGAGCAAACGGTGGCCAGGCTGTGTTCGGGAGATCCCAGCTGCAGGCGCTCGGCTCTCCTCAAAGATGATTCGCTGCTGGACTTTTACTACGAAGATACCAGGACGTACTACGACATGTTCCAACGAGGACTGCGGATCGCAGGAGGTGGGCCCTGTCTTGGCTTCAGAAAGCCGGGTCAGCC GGCCTACGAGTGGATGTCCTACACCGAGGTGGAGCACAAAGCCCAGCTTCTGGGCTCTGGGCTGCTGGCTAAAGGCTGCCAGCCCAACGCACAGCAGTTTGTTGGCATATTCGCACAGAACCGACCGGAGTGGGTCCTCACCGAGCTGGCCTGCTACACCTACTCCATGGCCGTGGTTCCTCTGTACGACACGCTGGGCCTGGAAGCCATGGTCCACATACTGAACCTGGCGGAGATCTCCTTGGTGATTTGTGACAAGGAGGACAAGGCGGCGGCCCTGCTGGAGAACAAAGAGAACGGCACGACTCCAACACTCTCCTGCCTGGTCCTCTTTAATAACTTCACGGAAGGTTTTGCAACGAGGGCGAAGGCCTGTAAGGTGGAAGTTCTAAAGCTGGAGCAGCTTATGGAGCTGGGCAGGCAGAACCTCAAAGATCCTGTGCCGCCCCGGCCTCAGGATCTGGCCGTGGTCTGCTTCACCAGTGGAACCACAGGGAAGCCCAAGGGAGCCATGATCACCCACGGAAACATCGCCTCCAACGCTTCCTCTGTCATTAAGCTCCTGGAGGGATCAGTCGTGATCCAACAGGAG] [+] EMBL BU805983 [ GTTCTGCAAGTAACTTTGTAAACTCGTTGAAGGAGCAAACGGTGGCCAGGCTGTGTTCGGGAGATCCCAGCTGCAGGCGCTCGGCTCTCCTCAAAGATGATTCGCTGCTGGACTTTTACTACGAAGATACCAGGACGTACTACGACATGTTCCAACGAGGACTGCGGATCGCAGGAGGTGGGCCCTGTCTTGGCTTCAGAAAGCCGGGTCAGTCTGTGCCTACGAGTGGATGTCCTACACCGAGGTGGAGCACAAAGCCCAGCTTCTGGGCTCTGGGCTGCTGGCTAAAGGCTGCCAGCCCAACGCACAGCAGTTTGTTGGCATATTCGCACAGAACCGACCGGAGTGGGTCCTCACCGAGCTGGCCTGCTACACCTACTCCATGGCCGTGGTTCCTCTGTACGACACGCTGGGCCTGGAAGCCATGGTCCACATACTGAACCTGGCGGAGATCTCCTTGGTGATTTGTGACAAGGAGGACAAGGCGGCGGCCCTGCTGGAGAACAAAGAGAACGGCACGACTCCAACACTCTCCTGCCTGGTCCTCTTT ] consensusID : consensus_2003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 799 fasta sequence [TTCGATGAGCAAACGGTGGCCAGGCTGTGTTCGAGTTATGCATTCCCTGGACTGGTTCCGTTCACTTCGCACCAGCACTGAACTGGAAGGAGCTGACTCAGAGAACACGTGGAGTCTTTGGCCCTCGCTGCCGTCGTCTTCCTTGGCGCTATCGCGGCGCTCCCTGCTGGGTTTAGGAGCCGTGGCCTCTCTCACTGCGTATTATCTGGTGATGCGGCCTCGCCCCATGCACCCCCCCTGCGATCTCCAGGCCCAGTCTGTGCCTGTGAATGGAGATCCCAGCTGCAGGCGCTCGGCTCTCCTCAAAGATGATTCGCTGCTGGACTTTTACTACGAAGATACCAGGACGTACTACGACATGTTCCAACGAGGACTGCGGATCGCAGGAGGTGGGCCCTGTCTTGGCTTCAGAAAGCCGGGTCAGCCGGCCTACGAGTGGATGTCCTACACCGAGGTGGAGCACAAAGCCCAGCTTCTGGGCTCTGGGCTGCTGGCTAAAGGCTGCCAGCCCAACGCACAGCAGTTTGTTGGCATATTCGCACAGAACCGACCGGAGTGGGTCCTCACCGAGCTGGCCTGCTACACCTACTCCATGGCCGTGGTTCCTCTGTACGACACGCTGGGCCTGGAAGCCATGGTCCACATACTGAACCTGGCGGAGATCTCCTTGGTGATTTGTGACAAGGAGGACAAGGCGGCGGCCCTGCTGGAGAACAAAGAGAACGGCACGACTCCAACACTCTCCTGCCTGGTCCTCTTTAATAACTTCACGGAAGGTTTTGCAACGAGGGCGAAGGCC] [+] EMBL CA846136 [TTCGATGAGCAAACGGTGGCCAGGCTGTGTTCGAGTTATGCATTCCCTGGACTGGTTCCGTTCACTTCGCACCAGCACTGAACTGGAAGGAGCTGACTCAGAGAACACGTGGAGTCTTTGGCCCTCGCTGCCGTCGTCTTCCTTGGCGCTATCGCGGCGCTCCCTGCTGGGTTTAGGAGCCGTGGCCTCTCTCACTGCGTATTATCTGGTGATGCGGCCTCGCCCCATGCACCCCCCCTGCGATCTCCAGGCCCAGTCTGTGCCTGTGAATGGAGATCCCAGCTGCAGGCGCTCGGCTCTCCTCAAAGATGATTCGCTGCTGGACTTTTACTACGAAGATACCAGGACGTACTACGACATGTTCCAACGAGGACTGCGGATCGCAGGAGGTGGGCCCTGTCTTGGCTTCAGAAAGCCGGGTCAGCCGGCCTACGAGTGGATGTCCTACACCGAGGTGGAGCACAAAGCCCAGCTTCTGGGCTCTGGGCTGCTGGCTAAAGGCTGCCAGCCCAACGCACAGCAGTTTGTTGGCATATTCGCACAGAACCGACCGGAGTGGGTCCTCACCGAGCTGGCCTGCTACACCTACTCCATGGCCGTGGTTCCTCTGTACGACACGCTGGGCCTGGAAGCCATGGTCCACATACTGAACCTGGCGGAGATCTCCTTGGTGATTTGTGACAAGGAGGACAAGGCGGCGGCCCTGCTGGAGAACAAAGAGAACGGCACGACTCCAACACTCTCCTGCCTGGTCCTCTTTAATAACTTCACGGAAGGTTTTGCAACGAGGGCGAAGGCC] consensusID : consensus_2003#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [TTATGCATTTCCAGGACTGGTTCCGTTCACTTCGCACCAGCACTGAACTGGAAGGAGCTGACTCAGAGAACACGTGGAGTCTTTGGCCCTCGCTGCCGTCGTCTTCCTTGGCGCTATCGCGGCGCTCCCTGCTGGGTTTAGGAGCCGTGGCCTCTCTCACTGCGTATTATCTGGTGATGCGGCCTCGCCCCATGCACCCCCCCTGCGATCTCCAGGCCCAGTCTGTGCCTGTGAATGGAGATCCCAGCTGCAGGCGCTCGGCTCTCCTCAAAGATGATTCGCTGCTGGACTTTTACTACGAAGATACCAGGACGTACTACGACATGTTCCAACGAGGACTGCGGATCGCAGGTAGCTCCAATCATAATAAACCAAGGTTGATTCCTCAGGTGACCCTTACAAACACAACTGACCTTTAACCTTCAAGTACGCTTTAAAGTGGCTGATGAGATTGGGCAGGGTTTATATATATACACACATATATATATATATATATATATACACACATATACATAATGTGTGAGTGTGTGTATCT] [+] EMBL BU806070 [TTATGCATTTCCAGGACTGGTTCCGTTCACTTCGCACCAGCACTGAACTGGAAGGAGCTGACTCAGAGAACACGTGGAGTCTTTGGCCCTCGCTGCCGTCGTCTTCCTTGGCGCTATCGCGGCGCTCCCTGCTGGGTTTAGGAGCCGTGGCCTCTCTCACTGCGTATTATCTGGTGATGCGGCCTCGCCCCATGCACCCCCCCTGCGATCTCCAGGCCCAGTCTGTGCCTGTGAATGGAGATCCCAGCTGCAGGCGCTCGGCTCTCCTCAAAGATGATTCGCTGCTGGACTTTTACTACGAAGATACCAGGACGTACTACGACATGTTCCAACGAGGACTGCGGATCGCAGGTAGCTCCAATCATAATAAACCAAGGTTGATTCCTCAGGTGACCCTTACAAACACAACTGACCTTTAACCTTCAAGTACGCTTTAAAGTGGCTGATGAGATTGGGCAGGGTTTATATATATACACACATATATATATATATATATATATACACACATATACATAATGTGTGAGTGTGTGTATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2003#0 ------------------------------------------------------------ consensus_2003#1 TTCGATGAGCAAACGGTGGCCAGGCTGTGTTCGAGTTATGCATTCCCTGGACTGGTTCCG 60 consensus_2003#2 ------------------------------------------------------------ consensus_2003#0 ------------------------------------------------------------ consensus_2003#1 TTCACTTCGCACCAGCACTGAACTGGAAGGAGCTGACTCAGAGAACACGTGGAGTCTTTG 120 consensus_2003#2 ------------------------------------------------------------ consensus_2003#0 ------------------------------------------------------------ consensus_2003#1 GCCCTCGCTGCCGTCGTCTTCCTTGGCGCTATCGCGGCGCTCCCTGCTGGGTTTAGGAGC 180 consensus_2003#2 ------------------------------------------------------------ consensus_2003#0 -----ACATTGTAAAGAATCGTAAATGTGTTCTGCAAG-TAACTTTGTAAACTCGTTGAA 54 consensus_2003#1 CGTGGCCTCTCTCACTGCGTATTATCTGGTGATGCGGCCTCGCCCCATGCACCCCCCCTG 240 consensus_2003#2 ------------------------------------------------------------ consensus_2003#0 GGAGCAAACGGTGGCCAGGCTGTGTTCG-----GGAGATCCCAGCTGCAGGCGCTCGGCT 109 consensus_2003#1 CGATCT--CCAGGCCCAGTCTGTGCCTGTGAATGGAGATCCCAGCTGCAGGCGCTCGGCT 298 consensus_2003#2 ------------------------------------------------------------ consensus_2003#0 CTCCTCAAAGATGATTCGCTGCTGGACTTTTACTACGAAGATACCAGGACGTACTACGAC 169 consensus_2003#1 CTCCTCAAAGATGATTCGCTGCTGGACTTTTACTACGAAGATACCAGGACGTACTACGAC 358 consensus_2003#2 --------------------------------------------------------TTAT 4 * consensus_2003#0 ATGTTCCAACGAGGACTGCGGATCGCAGGAGGTGGGCCCTGTCTTGGCTTCAGAAAGCCG 229 consensus_2003#1 ATGTTCCAACGAGGACTGCGGATCGCAGGAGGTGGGCCCTGTCTTGGCTTCAGAAAGCCG 418 consensus_2003#2 GCATTTCCAGGACTGGTTCCGTTCACTTCGCACCAGCACTGAACTGG----AAGGAGCTG 60 ** * * ** * * * ** * ** *** *** * *** * consensus_2003#0 GGTCAGCCTGGGCCTACGAGTGGATGTCCTACACCGAGGTGGAGCACAA-AGCCCAGCTT 288 consensus_2003#1 GGTCAGCC--GGCCTACGAGTGGATGTCCTACACCGAGGTGGAGCACAA-AGCCCAGCTT 475 consensus_2003#2 ACTCAGAGAACACGTG-GAGTCTTTGGCCCTCGCTGCCGTCGTCTTCCTTGGCGCTATCG 119 **** * * **** ** ** * * * ** * * ** * consensus_2003#0 CTGGGCTCTGGGCTGCTGGCTAAAGGCTGCCAGCCCAACGCACAGCAGTTTGTTGGCATA 348 consensus_2003#1 CTGGGCTCTGGGCTGCTGGCTAAAGGCTGCCAGCCCAACGCACAGCAGTTTGTTGGCATA 535 consensus_2003#2 CGGCGCTCCCTGCTG--GGTTTAGGAGCCGTGGCCTCTCTCACTGCGTATTATC----TG 173 * * **** **** ** * * * *** * *** ** ** * * consensus_2003#0 TTCGCACAGAACCGACCGGAGTGGGTCCTCACCGAGCTGGCCTGCTACACCTACTCCATG 408 consensus_2003#1 TTCGCACAGAACCGACCGGAGTGGGTCCTCACCGAGCTGGCCTGCTACACCTACTCCATG 595 consensus_2003#2 GTGATGCGGCCTCGCCCCATGCACCCCCCCTGCGATCTCCAGGCCCAGTCTGTGCCTGTG 233 * * * ** ** * ** * *** ** * * * * ** consensus_2003#0 GCCGTGGTTCCTCTGTAC-GACACGCTGGGCCTGGAAGCCATGGTCCACATACTGAACCT 467 consensus_2003#1 GCCGTGGTTCCTCTGTAC-GACACGCTGGGCCTGGAAGCCATGGTCCACATACTGAACCT 654 consensus_2003#2 AATGGAGATCCCAGCTGCAGGCGCTCGGCTCTCCTCAAAGATGATTCGC-TGCTGGACTT 292 * * *** * * * * * * * * * *** * * * * *** ** * consensus_2003#0 G-GCGGAGATCTCCTTGGTGATTTGTGACAAGGAGGACAAGGCGGCGGCCCTGCTGGAGA 526 consensus_2003#1 G-GCGGAGATCTCCTTGGTGATTTGTGACAAGGAGGACAAGGCGGCGGCCCTGCTGGAGA 713 consensus_2003#2 TTACTACGAAGATACCAG-GACGTACTACGACATGTTCCAACGAGGACTGCGGATCGCAG 351 * ** * ** * ** * * * * * * * * * consensus_2003#0 ACAAAGAGAACGGCACGACTCCAACACTCTCCTGCCTGGTCCTCTTTAATAACTTCACGG 586 consensus_2003#1 ACAAAGAGAACGGCACGACTCCAACACTCTCCTGCCTGGTCCTCTTTAATAACTTCACGG 773 consensus_2003#2 GTAGCTCCAATCATAATAAACCAAGGTTGATTCCTCAGGTGACCCTTACAAACACAACTG 411 * ** * * **** * * *** * *** *** ** * consensus_2003#0 AAGGTTTTGCAACGAGGGCGAAGGCCTGTAAGGTGGAAGTTCTAAAGCTGGAGCAGCTTA 646 consensus_2003#1 AAGGTTTTGCAACGAGGGCGAAGGCC---------------------------------- 799 consensus_2003#2 ACCTTTAACCTTCAAGTACG-----CTTTAAAGTGGCTGATG-AGATTGGGCAGGGTTTA 465 * ** * * ** ** * consensus_2003#0 TGGAGCTGGGCAGGCAGAACCTCAAAGATCCTGTGCCGCCCCGGCCTCAGGATCTGGCCG 706 consensus_2003#1 ------------------------------------------------------------ consensus_2003#2 TATATATACACACATATATATATATATATA-TATATACACACATATACATAATGTGTGAG 524 consensus_2003#0 TGGTCTGCTTCACCAGTGGAACCACAGGGAAGCCCAAGGGAGCCATGATCACCCACGGAA 766 consensus_2003#1 ------------------------------------------------------------ consensus_2003#2 TG-TGTGTATCT------------------------------------------------ 535 consensus_2003#0 ACATCGCCTCCAACGCTTCCTCTGTCATTAAGCTCCTGGAGGGATCAGTCGTGATCCAAC 826 consensus_2003#1 ------------------------------------------------------------ consensus_2003#2 ------------------------------------------------------------ consensus_2003#0 AGGAG 831 consensus_2003#1 ----- consensus_2003#2 ----- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |