These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 857 fasta sequence [CATACAGGACGGAGACATGGAGGGGAGTCATTCGCACCTGACGGTGACCACCTTCTTGGCTTTTCTGGTTCTGAGTCAGCTTCAAGCGTCCATTCAGGCCCAGGACGCCTGTCCGGAATCTAGCGCTCTAGAAATTCCAGAAAACAACAATGTGGGCGATCTCGTGACGACAATTGACATCCCTCCCGGGGCGACATTGAGGCTGAATCCTCCTCAAGGCTCTGTCAACCCATTCTTTTTAAATGGTACCCAGCTGCTCGCTGCCATAGTTTTCGATGCTGAGCAATACACAACTCTTACCGCTGGACTGGTCTGCCAAAAACCCGCAAGCAGTCCGGTTTCCTTCAGCGTTACTGTAGTCGTGGCCAATGTGAACGACAACCCTCCAGTGTTTCCACAGACAGTCTACCAGTTCAACGTCAGTGAGCTGTCTCCTGAGAACACAGTGTTGGGACGGGTTGAGGCCCAGGATTTAGACAAGCTTGATCTCTACTACAGACTGGACGGAGAAACTAGCGGCTTTAAGCTCTCGTCACCTACTGTCCCGGAAATCCTCGTCCAGTCACTTCTGGATTACGACAAAGTCAAAAACGTCTCGCTCACGTTGTTCGTTCAGGACACGTTGCCTGGTGTCAGTCCATCCTACAACACCTCCACCACTATAGAGATTACCATTCTTGACGTGGACAATAGGCCGCCTTGGTTCCAGCCCTGCACCGTGTACGAGGCCGGGACCAATCTGATCTGCTCCAGCTCTGGTTACACTGGCCGGGTCACCTTAAATAAGAAAGAGACTGAACCTTTAAAGCTGAATCCTGGACCCCTATATGCCATCGATGGGGACTCTGGGATTAATG] [+] EMBL CA589848 [CATACAGGACGGAGACATGGAGGGGAGTCATTCGCACCTGACGGTGACCACCTTCTTGGCTTTTCTGGTTCTGAGTCAGCTTCAAGCGTCCATTCAGGCCCAGGACGCCTGTCCGGAATCTAGCGCTCTAGAAATTCCAGAAAACAACAATGTGGGCGATCTCGTGACGACAATTGACATCCCTCCCGGGGCGACATTGAGGCTGAATCCTCCTCAAGGCTCTGTCAACCCATTCTTTTTAAATGGTACCCAGCTGCTCGCTGCCATAGTTTTCGATGCTGAGCAATACACAACTCTTACCGCTGGACTGGTCTGCCAAAAACCCGCAAGCAGTCCGGTTTCCTTCAGCGTTACTGTAGTCGTGGCCAATGTGAACGACAACCCTCCAGTGTTTCCACAGACAGTCTACCAGTTCAACGTCAGTGAGCTGTCTCCTGAGAACACAGTGTTGGGACGGGTTGAGGCCCAGGATTTAGACAAGCTTGATCTCTACTACAGACTGGACGGAGAAACTAGCGGCTTTAAGCTCTCGTCACCTACTGTCCCGGAAATCCTCGTCCAGTCACTTCTGGATTACGACAAAGTCAAAAACGTCTCGCTC ] [+] EMBL CA589834 [ CAGCTGCTCGCTGCCATAGTTTTCGATGCTGAGCAATACACAACTCTTACCGCTGGACTGGTCTGCCAAAAACCCGCAAGCAGTCCGGTTTCCTTCAGCGTTACTGTAGTCGTGGCCAATGTGAACGACAACCCTCCAGTGTTTCCACAGACAGTCTACCAGTTCAACGTCAGTGAGCTGTCTCCTGAGAACACAGTGTTGGGACGGGTTGAGGCCCAGGATTTAGACAAGCTTGATCTCTACTACAGACTGGACGGAGAAACTAGCGGCTTTAAGCTCTCGTCACCTACTGTCCCGGAAATCCTCGTCCAGTCACTTCTGGATTACGACAAAGTCAAAAACGTCTCGCTCACGTTGTTCGTTCAGGACACGTTGCCTGGTGTCAGTCCATCCTACAACACCTCCACCACTATAGAGATTACCATTCTTGACGTGGACAATAGGCCGCCTTGGTTCCAGCCCTGCACCGTGTACGAGGCCGGGACCAATCTGATCTGCTCCAGCTCTGGTTACACTGGCCGGGTCACCTTAAATAAGAAAGAGACTGAACCTTTAAAGCTGAATCCTGGACCCCTATATGCCATCGATGGGGACTCTGGGATTAATG] consensusID : consensus_2050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 785 fasta sequence [TGACCACCTTCTTGGCTTTTCTGGTTCTGAGTCAGCTTCAAGCGTCCATTCAGGCCCAGGACGCCTGTCCGGAATCTAGCGCTCTAGAAATTCCAGAAAACAACAATGTGGGCGATCTCGTGACGACAATTGACATCCCTCCCGGGGCGACATTGAGGCTGAATCCTCCTCAAGGCTCTGTCAACCCATTCTTTTTAAATGGTACCCAGCTGCTCGCTGCCATAGTTTTCGATGCTGAGCAATACACAACTCTTACCGCTGGACTGGGCTGCCAAAAACCCGCAAGCAGTCCGGTAAAATTTCATCTTAAAATTAAGTGAGCGATAAATTGCGTCTTTCTGTTGGGGATACATTTCACTTCCTGACCCCTTAATGCCTACGNGGGATGGGGTCCCCCAGTCCCCAGTCCCCAGTCCCCAGTCCTCGAGGGCCACAATCCAACCGGGTTTTCTGTCCTCCCAGGCAGCTTTCACCATGGCAAGTGGAAACTCAGGTGGATCCCTCTGGATTGCGGGCCTCGAGGAATGGGGCTACCCCCCAGCATTGTTGGCTGTTTTCTTTAAAAAAAAAACAAAGAACCTATTGACAGTGTTTTTCTTTGACTCCCAAGTTCCTTCAGCGTTACCGCACTCCTGGCCAATGGGAACGACAACCCTTCCAGGGTTCAACAAGAGTCTACCCAGCCCAACGGCAGTGAACTGGCTCCTGAAAACACCGGGATGGGACAGGGCGGGGCCCCCGATTTCGACAAGGTTGGTATTAACTTCCGACTGGACGGACAACAA] [+] EMBL FR0059311 [TGACCACCTTCTTGGCTTTTCTGGTTCTGAGTCAGCTTCAAGCGTCCATTCAGGCCCAGGACGCCTGTCCGGAATCTAGCGCTCTAGAAATTCCAGAAAACAACAATGTGGGCGATCTCGTGACGACAATTGACATCCCTCCCGGGGCGACATTGAGGCTGAATCCTCCTCAAGGTTCTGTCAACCCATTCTTTTTAAATGGTACCCAGCTGCTCGCTGCCATAGTTTTCGATGCTGAGCAATACACAACTCTTACCGCTGAACTGGGCTGC ] [+] EMBL CA588294 [ AAGCGTCCATTCAGGCCCAGGACGCCTGTCCGGAATCTAGCGCTCTAGAAATTCCAGAAAACAACAATGTGGGCGATCTCGTGACGACAATTGACATCCCTCCCGGGGCGACATTGAGGCTGAATCCTCCTCAAGGCTCTGTCAACCCATTCTTTTTAAATGGTACCCAGCTGCTCGCTGCCATAGTTTTCGATGCTGAGCAATACACAACTCTTACCGCTGGACTGGTCTGCCAAAAACCCGCAAGCAGTCCGGTAAAATTTCATCTTAAAATTAAGTGAGCGATAAATTGCGTCTTTCTGTTGGGGATACATTTCACTTCCTGACCCCTTAATGCCTACGNGGGATGGGGTCCCCCAGTCCCCAGTCCCCAGTCCCCAGTCCTCGAGGGCCACAATCCAACCGGGTTTTCTGTCCTCCCAGGCAGCTTTCACCATGGCAAGTGGAAACTCAGGTGGATCCCTCTGGATTGCGGGCCTCGAGGAATGGGGCTACCCCCCAGCATTGTTGGCTGTTTTCTTTAAAAAAAAAACAAAGAACCTATTGACAGTGTTTTTCTTTGACTCCCAAGTTCCTTCAGCGTTACCGCACTCCTGGCCAATGGGAACGACAACCCTTCCAGGGTTCAACAAGAGTCTACCCAGCCCAACGGCAGTGAACTGGCTCCTGAAAACACCGGGATGGGACAGGGCGGGGCCCCCGATTTCGACAAGGTTGGTATTAACTTCCGACTGGACGGACAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2050#0 CATACAGGACGGAGACATGGAGGGGAGTCATTCGCACCTGACGGTGACCACCTTCTTGGC 60 consensus_2050#1 --------------------------------------------TGACCACCTTCTTGGC 16 **************** consensus_2050#0 TTTTCTGGTTCTGAGTCAGCTTCAAGCGTCCATTCAGGCCCAGGACGCCTGTCCGGAATC 120 consensus_2050#1 TTTTCTGGTTCTGAGTCAGCTTCAAGCGTCCATTCAGGCCCAGGACGCCTGTCCGGAATC 76 ************************************************************ consensus_2050#0 TAGCGCTCTAGAAATTCCAGAAAACAACAATGTGGGCGATCTCGTGACGACAATTGACAT 180 consensus_2050#1 TAGCGCTCTAGAAATTCCAGAAAACAACAATGTGGGCGATCTCGTGACGACAATTGACAT 136 ************************************************************ consensus_2050#0 CCCTCCCGGGGCGACATTGAGGCTGAATCCTCCTCAAGGCTCTGTCAACCCATTCTTTTT 240 consensus_2050#1 CCCTCCCGGGGCGACATTGAGGCTGAATCCTCCTCAAGGCTCTGTCAACCCATTCTTTTT 196 ************************************************************ consensus_2050#0 AAATGGTACCCAGCTGCTCGCTGCCATAGTTTTCGATGCTGAGCAATACACAACTCTTAC 300 consensus_2050#1 AAATGGTACCCAGCTGCTCGCTGCCATAGTTTTCGATGCTGAGCAATACACAACTCTTAC 256 ************************************************************ consensus_2050#0 CGCTGGACTGGTCTGCCAAAAACCCGCAAGCAGTCCGGTTTCCTTCAGCGTTACTGTAGT 360 consensus_2050#1 CGCTGGACTGGGCTGCCAAAAACCCGCAAGCAGTCCGGTAAAATTTCATCTTAAAATTAA 316 *********** *************************** ** *** * consensus_2050#0 CGTGGCCAATGTGAACGACAACCCTCCAGTGTTTCCACAG---ACAGTCTACCAGTTCAA 417 consensus_2050#1 -GTGAGCGAT--AAATTGCGTCTTTCTGTTGGGGATACATTTCACTTCCTGACCCCTTAA 373 *** * ** ** * * ** ** *** ** ** * * ** consensus_2050#0 CGTCAGTGAGCTGT----CTCCTGAGAACACAGTGTTGGGACGGG-----TTGAGGCCCA 468 consensus_2050#1 TGCCTACGNGGGATGGGGTCCCCCAGTCCCCAGTCCCCAGTCCCCAGTCCTCGAGGGCCA 433 * * * * * ** ** * **** * * * **** *** consensus_2050#0 GGATTTAGACAAGCTTGATCTCTACTACAGACTGGACGGAGAAACTAGCGGCTTTAAGCT 528 consensus_2050#1 CAATCCAACCGGGTTTTCTGTCCTCC-CAGGCAGCTTTCACCA--TGGCAAGTGGAAACT 490 ** * * * ** * ** * *** * * * * * ** * ** ** consensus_2050#0 CTCGTCACCTACTGTCCCGGAAATCCTCGTCCAGTCACTTCTGGATTACGACAAAGTCAA 588 consensus_2050#1 CAGGTGGATCCCT---CTGGAT-------TGCGGGC-CTCGAGGAATGGGGCTACCCCCC 539 * ** ** * *** * * * * ** *** * * * * * consensus_2050#0 AAACGTCTCGCTCACGTTGTTCGTTCAGGACACGTTG--CCTGGTGTCAGT-CCATCCTA 645 consensus_2050#1 AGCATTGTTGGCTGTTTTCTTTAAAAAAAAAACAAAGAACCTATTGACAGTGTTTTTCTT 599 * * * * ** ** * * ** * *** ** **** * ** consensus_2050#0 CAACACCTCCACCACTATAGAGATTACCATTCTTGACGTGGACAATAGGCCGCCTTGGTT 705 consensus_2050#1 TGACTCCCAAGTTCCTTCAGCG-TTACCGCACT---CCTGGCCAATGGG-------AACG 648 ** ** ** ** * ***** ** * *** **** ** consensus_2050#0 CCAGCCCTGCACCGTGTACGAGGCCGGGACCAATCTGATCTGCTCCAGCTCTGGTTACAC 765 consensus_2050#1 ACAACCCTTC-CAGGGTTCAA--CAAGAGTCTACCCAGCCCA--ACGGCAGTGAACTGGC 703 ** **** * * * ** * * * * * * * * * ** ** * consensus_2050#0 TGGCCGGGTCACCTTAAATAAGAAAGAGACTGAACCTTTAAAGCTGAATCCTGGACCCCT 825 consensus_2050#1 TCCTGAAAACACCG-GGATGGGACAG-GGCGGGGCCCCCGATTTCGA---CAAGGTTGGT 758 * **** ** ** ** * * * ** * ** * * * consensus_2050#0 ATATGCCATCGATGGGGACTCTGGGATTAATG 857 consensus_2050#1 ATTAACTTCCGACTGGA---CGGACAACAA-- 785 ** * *** ** * * * ** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |