These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2053#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 597 fasta sequence [GTGTTCCCAACGTGGTCTGTCGTGGTGCGTCTCAGTGAGGATGGGGGAGTTAAAAGTTCACCGCGTGCGCTTCTTTGACTACATGCCCAGCGCTATCCGAGCCATGGCCTTCAACCCCCGGACCGAGCGGCTGGCTGTGGCCCGGGAGGATGGAGCTCTGGAGATCTTCAACTTCTCCGACCATTATTTCCAAGAAAAGGTGGTCCCGGGTCAGAAGGGTCGGGCTACGGACGCTCTGTGTTGGGTCGGTCCGCGTCTCTTCAGCGCTGGTTTGAATGGCGAGATCACAGAATACGACCTGGACACGCTGAGGCCCAAGTACTCCGTCAGTGCCTATGGAGGACCCATCTGGAGCATCAGCAGCAACCCCCAGGGAACGCTGCTCGCGGTGGGCTGTGAGGACGGCACCGTCAAGATGTTTGAAATCCTGGAGCAGAGGATTCAGTTTCAGAAGAACTTGGACAGGCAGAAGGGTCGGATTATTTCTCTGTCCTGGCATTCGTCTGGCGCCCTGATTGCGGCAGGAATGATGGATATGATCCGGATCTTCGATGCCAACACAGGCCACGCCACGCGGCGGCTGCTGGTGGAGCGCGG] [+] EMBL BU807437 [GTGTTCCCAACGTGGTCTGTCGTGGTGCGTCTCAGTGAGGATGGGGGAGTTAAAAGTTCACCGCGTGCGCTTCTTTGACTACATGCCCAGCGCTATCCGAGCCATGGCCTTCAACCCCCGGACCGAGCGGCTGGCTGTGGCCCGGGAGGATGGAGCTCTGGAGATCTTCAACTTCTCCGACCATTATTTCCAAGAAAAGGTGGTCCCGGGTCAGAAGGGTCGGGCTACGGACGCTCTGTGTTGGGTCGGTCCGCGTCTCTTCAGCGCTGGTTTGAATGGCGAGATCACAGAATACGACCTGGACACGCTGAGGCCCAAGTACTCCGTCAGTGCCTATGGAGGACCCATCTGGAGCATCAGCAGCAACCCCCAGGGAACGCTGCTCGCGGTGGGCTGTGAGGACGGCACCGTCAAGATGTTTGAAATCCTGGAGCAGAGGATTCAGTTTCAGAAGAACTTGGACAGGCAGAAGGGTCGGATTATTTCTCTGTCCTGGCATTCGTCTGGCGCCCTGATTGCGGCAGGAATGATGGATATGATCCGGATCTTCGATGCCAACACAGGCCACGCCACGCGGCGGCTGCTGGTGGAGCGCGG] [+] EMBL FR0061741 [ CTTCTTTGACTACATGCCCAGCGCTATGCGAGCCATGGCCTTCAACCCCCGGACCGAGCGGCTGGCTGTGGCCCGGGAGGATGGAGCTCTGGAGATCTTCAACTTCTCCGACCATTATTTCCAAGAAAAGGTGGTCCCGGGTCAGAAGGGTCGGGCTACGGACGCTCTGTGTTGGGTCGGTCCGCGTCTCTTCAGCGCTGGTTTGAATGGCGAGATCACAGAATACGACCTGGACACGCTGAGGCCCAAGTACTCCGTCAGTGCCTATGGAGGACCCATCTGGAGCATCAGCAGCAACCC ] [+] EMBL FR0060844 [ ATGCCCAGCGCTATCCGAGCCATGGCCTTCAACCCCCGGACCGAGCGGCTGGCTGTGGCCCGGGAGGATGGAGCTCTGGAGATCTTCAACTTCTCCGACCATTATTTCCAAGAAAAGGTGGTCCCGGGTCAGAAGGGTCGGGCTACGGACGTTCTGTGTTGGGTCGGGCCGCGTCTCTTCAGCGCTGGTTTGAATGGCGAGATCACAGAATACGACCTGCACACGCTGAG ] consensusID : consensus_2053#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence [CGCTCAGGAGGGGGGCTATTAAAAGTTCACCGCGTGCGCTTCTTTGACTACATGCCCAGCGCTATCCGAGCCATGGCCTTCAACCCCCGGACCGAGCGGTTGGCTGTGGCCCGGAAGGATGGAGCTTTGGAGATCTTCAACTTCTCCGACCATTATTTCCAAGAAAAGGGGGCCCCGGTTCAGAAGGGTCGGTCTACGGACGCTCTGTGTTGGGGCGGTCCGCGTCTCTCCAGCGCTGGGTTGAATGGGGAGATCACAGAATACGACCTGTACACGCTGAGGCCCAAGGACTTCCGTGAGTGCCTATTGGAGGAACCAATTTGGGGGCATTCAGCA] [+] EMBL FR0060632 [CGCTCAGGAGGGGGGCTATTAAAAGTTCACCGCGTGCGCTTCTTTGACTACATGCCCAGCGCTATCCGAGCCATGGCCTTCAACCCCCGGACCGAGCGGTTGGCTGTGGCCCGGAAGGATGGAGCTTTGGAGATCTTCAACTTCTCCGACCATTATTTCCAAGAAAAGGGGGCCCCGGTTCAGAAGGGTCGGTCTACGGACGCTCTGTGTTGGGGCGGTCCGCGTCTCTCCAGCGCTGGGTTGAATGGGGAGATCACAGAATACGACCTGTACACGCTGAGGCCCAAGGACTTCCGTGAGTGCCTATTGGAGGAACCAATTTGGGGGCATTCAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2053#0 GTGTTCCCAACGTGGTCTGTCGTGGTGCGTCTCAGTGAGGATGGGGGA-GTTAAAAGTTC 59 consensus_2053#1 --------------------------------CGCTCAGGAGGGGGGCTATTAAAAGTTC 28 * * **** ***** ********** consensus_2053#0 ACCGCGTGCGCTTCTTTGACTACATGCCCAGCGCTATCCGAGCCATGGCCTTCAACCCCC 119 consensus_2053#1 ACCGCGTGCGCTTCTTTGACTACATGCCCAGCGCTATCCGAGCCATGGCCTTCAACCCCC 88 ************************************************************ consensus_2053#0 GGACCGAGCGGCTGGCTGTGGCCCGGGAGGATGGAGCTCTGGAGATCTTCAACTTCTCCG 179 consensus_2053#1 GGACCGAGCGGTTGGCTGTGGCCCGGAAGGATGGAGCTTTGGAGATCTTCAACTTCTCCG 148 *********** ************** *********** ********************* consensus_2053#0 ACCATTATTTCCAAGAAAAGGTGGTCCCGGGTCAGAAGGGTCGGGCTACGGACGCTCTGT 239 consensus_2053#1 ACCATTATTTCCAAGAAAAGGGGGCCCCGGTTCAGAAGGGTCGGTCTACGGACGCTCTGT 208 ********************* ** ***** ************* *************** consensus_2053#0 GTTGGGTCGGTCCGCGTCTCTTCAGCGCTGGTTTGAATGGCGAGATCACAGAATACGACC 299 consensus_2053#1 GTTGGGGCGGTCCGCGTCTCTCCAGCGCTGGGTTGAATGGGGAGATCACAGAATACGACC 268 ****** ************** ********* ******** ******************* consensus_2053#0 TGGACACGCTGAGGCCCAAGTACT-CCGTCAGTGCCTAT-GGAGGACCCATCTGGAGCAT 357 consensus_2053#1 TGTACACGCTGAGGCCCAAGGACTTCCGTGAGTGCCTATTGGAGGAACCAATTTGGGGGC 328 ** ***************** *** **** ********* ****** *** * * * consensus_2053#0 CAGCAGCAACCCCCAGGGAACGCTGCTCGCGGTGGGCTGTGAGGACGGCACCGTCAAGAT 417 consensus_2053#1 ATTCAGCA---------------------------------------------------- 336 ***** consensus_2053#0 GTTTGAAATCCTGGAGCAGAGGATTCAGTTTCAGAAGAACTTGGACAGGCAGAAGGGTCG 477 consensus_2053#1 ------------------------------------------------------------ consensus_2053#0 GATTATTTCTCTGTCCTGGCATTCGTCTGGCGCCCTGATTGCGGCAGGAATGATGGATAT 537 consensus_2053#1 ------------------------------------------------------------ consensus_2053#0 GATCCGGATCTTCGATGCCAACACAGGCCACGCCACGCGGCGGCTGCTGGTGGAGCGCGG 597 consensus_2053#1 ------------------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |