These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2057#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 604 fasta sequence [ATTGATGTGCTGTTGCTTAGTGTTTTTTCCTGAGTAGTTATGTCAAAATAATATGAACTGTAAAGAACGCGCTGGAGGAAGAACTTTGGTAGTGTATTCAGCAAAGAAACTATCGAAGATGCAGAACATGTTAAACATCGTGAAGGGGACGGCTCATGGCGTGGCTGAATACCTCACTCCAGTGCTGAAGGAATCCAAATTTAAAGAGACTGGAGTCATTACTCCAGAGGAGTTTGTAGCAGCTGGAGATTATCTGGNTCACCACTGCCCAACATGGAAATGGGCTTCAGGAGAGGAGGTCAAAGGGAAGCCATATTTACCTGAGGATAAACAGTTTCTCTTGACGCGCAATGTTCCTTGTTACAAACGTTGTAGACAAATGGAGGACTCAGATGAGCTGGAAGCCATCATAGAGGAGGATGATGGTGACGGGGGCTGGGTGGACACTTACCATAACTCGGCAGTTTTAGGAGTCACAGATGCTGTGCAGGATATTTCACTAGATAATAACAAGGACAAGAATATGAATGCCACCTCTGCAACATGTGCTGATGANGATGATGGAGACGACGATGATGGCGAAGCAGCAGATATGGAAGAGTAT] [+] EMBL CA846241 [ATTGATGTGCTGTTGCTTAGTGTTTTTTCCTGAGTAGTTCTGTCAAAATAATATGAACTGTAAAGAACGCGCTTTA CAAGAACTTTGGTAGTGTATTCAGCAAAGAAACTATCGAAGATGCAGAACATGTTAAACATCGTGAAGGGGACGGCTCATGGCGTGGCTGAATACCTCACTCCAGTGCTGAAGGAATCCAAATTTAAAGAGACTGGAGTCATTACTCCAGAGGAGTTTGTAGCAGCTGGAGATTATCTGGTTCACCACTGCCCAACATGGAAATGGGCTTCAGGAGAGGAGGTCAAAGTGAAGCCATATTTACCTGAGGATAAACAGTTTCTCTTGACGCGCAATGTTCCTTGTTACAAACGTTGTAAACAAATGGAGTACTCAGATGAGCTGGAAGCCATCATAGAGGAGGATGATGGTGACGGGGGCTGGGTGGACACTTACCATAACTCGGCAGTTTTAGGAGTCACAGATGCTGTGCAGGATATTTCACTAGATAATAACAAGGACAAGAATATGAATGCCACCTCTGCAACATGTGCTGATGANGATGATGGAGACGACGATGATGGCGAAGCAGCAGATATGGAAGAGTAT] [+] EMBL FR0063659 [ TTGCTTAGTGTTTTTTCCTGAGTAGTTATGTCAAAATAATATGAATTGTAAAGAACGCGCTGGAGGAAGAACTTTGGTAGTGTATTCAGCAAAGAAACTATCGAAGATGCAGAACATGTTAAACATCGTGAAGGGGACGGCTCTTGGCGTGGCTGAATACCTCACTCCAGTGCTGAAGGAATCCAAATTTAAAGAGACTGGAGTCATTACTCCAGAGGAGTTTGTAGCAGCTGGAGATTATCTGGNTCACCACTGCCCAACATGGAAATGGGCTTCAGGAGAGGAGGTCAAAGGGAAGCCATATTTACCTGAGGATAAACAGTTTCTCTTGACGCGCAATGTTCCTTGTTACAAACGTTGTAGACAAATGGAGGACTCAGATGA ] consensusID : consensus_2057#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [CTTAGTGTTTTTTCCTGAGTAGTTATGTCAAAATAATATGAATTGTAAAGAACGCGCTTTACAAGAACTTTGGTAGTGTATTCAGCAAAGAAACTATCGAAGATGCAGAACATGTTAAACATCGTGAAGGGAACGGCTCTTGGCGTGGCTGAATACCTCACTCCAGTGCTGAAGGAATCCAAATTTAAAGAGACTGGAAATGGGCTTCAGGAGAGGAGGTCAAAGTGAAGCCATATTTACCTGAGGATATACAGTTTCTCTTGACACGCAATGTTCCTTGTTACAAACGTTGTAAACAAATGGAGTACTCAGATGAGCTGGAAGCCATCATAGAGGAGGATGATGGTGACGGGGGCTGGGTGGACACTTACCATAACTCGGCAGCTTTAGGAGTCACGGATGCTGTGCAGGATATTTCACTAGATAATAACAAGGACAAGAATATGAATGCCACCTCTGCAACATGTGCTGATGAGGATGATGGAGACGACGATGATGGCGAAGCAGCAGAT] [+] EMBL CA589082 [CTTAGTGTTTTTTCCTGAGTAGTTATGTCAAAATAATATGAATTGTAAAGAACGCGCTTTACAAGAACTTTGGTAGTGTATTCAGCAAAGAAACTATCGAAGATGCAGAACATGTTAAACATCGTGAAGGGAACGGCTCTTGGCGTGGCTGAATACCTCACTCCAGTGCTGAAGGAATCCAAATTTAAAGAGACTGGAAATGGGCTTCAGGAGAGGAGGTCAAAGTGAAGCCATATTTACCTGAGGATATACAGTTTCTCTTGACACGCAATGTTCCTTGTTACAAACGTTGTAAACAAATGGAGTACTCAGATGAGCTGGAAGCCATCATAGAGGAGGATGATGGTGACGGGGGCTGGGTGGACACTTACCATAACTCGGCAGCTTTAGGAGTCACGGATGCTGTGCAGGATATTTCACTAGATAATAACAAGGACAAGAATATGAATGCCACCTCTGCAACATGTGCTGATGAGGATGATGGAGACGACGATGATGGCGAAGCAGCAGAT] consensusID : consensus_2057#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 167 fasta sequence [ACGAGAAGGGAACGGAACTTGGCGCGGCGGAACACCNCACACCAGGGCAGAAGGAANCCAAACCGAAAGAGACAGGAGGCACCACTTTTTTTTTTTTCGAAGCACATGGAGATTACGTGGATCACCATTGCCAAACATGGAAATGGGCTTCAGGAGAGGAGGTCAAA] [+] EMBL CA844851 [ACGAGAAGGGAACGGAACTTGGCGCGGCGGAACACCNCACACCAGGGCAGAAGGAANCCAAACCGAAAGAGACAGGAGGCACCACTTTTTTTTTTTTCGAAGCACATGGAGATTACGTGGATCACCATTGCCAAACATGGAAATGGGCTTCAGGAGAGGAGGTCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2057#0 ATTGATGTGCTGTTGCTTAGTGTTTTTTCCTGAGTAGTTATGTCAAAATAATATGAACTG 60 consensus_2057#1 ---------------CTTAGTGTTTTTTCCTGAGTAGTTATGTCAAAATAATATGAATTG 45 consensus_2057#2 ------------------------------------------------------------ consensus_2057#0 TAAAGAACGCGCTGGAGGAAGAACTTTGGTAGTGTATTCAGCAAAGAAACTATCGAAGAT 120 consensus_2057#1 TAAAGAACGCGCTTTAC-AAGAACTTTGGTAGTGTATTCAGCAAAGAAACTATCGAAGAT 104 consensus_2057#2 ------------------------------------------------------------ consensus_2057#0 GCAGAACATGTTAAACATCGTGAAGGGGACGGCTCATGGCGTGGCTGAATACCTCACTCC 180 consensus_2057#1 GCAGAACATGTTAAACATCGTGAAGGGAACGGCTCTTGGCGTGGCTGAATACCTCACTCC 164 consensus_2057#2 -----------------ACGAGAAGGGAACGGAACTTGGCGCGGCGGAACACCNCACACC 43 ** ****** **** * ***** *** *** *** *** ** consensus_2057#0 AGTGCTGAAGGAATCCAAATTTAAAGAGACTGGAGTCATTACTCCAGAGGAGTTTGTAGC 240 consensus_2057#1 AGTGCTGAAGGAATCCAAATTTAAAGAGACTGGA-------------------------- 198 consensus_2057#2 AGGGCAGAAGGAANCCAAACCGAAAGAGACAGGA-------------------------- 77 ** ** ******* ***** ******** *** consensus_2057#0 AGCTGGAGATTATCTGGNTCACCACTGCCCAACATGGAAATGGGCTTCAGGAGAGGAGGT 300 consensus_2057#1 --------------------------------------AATGGGCTTCAGGAGAGGAGGT 220 consensus_2057#2 ------------------------------------------GGCACCACTT-------- 87 *** ** consensus_2057#0 CAAAGGGAAGCCATATTTACCTGAGGATAAACAGTTTCTCTTGACGCGCAATGTTCCTTG 360 consensus_2057#1 CAAAGTGAAGCCATATTTACCTGAGGATATACAGTTTCTCTTGACACGCAATGTTCCTTG 280 consensus_2057#2 ----------TTTTTTTTTTCGAAGCACATGGAGATTACGTGGAT---CACCATTGCCAA 134 * *** * ** * * ** ** * ** ** ** * consensus_2057#0 TTACAAACGTTGTAGACAAATGGAGGACTCAGATGAGCTGGAAGCCATCATAGAGGAGGA 420 consensus_2057#1 TTACAAACGTTGTAAACAAATGGAGTACTCAGATGAGCTGGAAGCCATCATAGAGGAGGA 340 consensus_2057#2 ACATGGAAATGGGCTTCAGGAGAGGAGGTCAAA--------------------------- 167 * * * * ** * * *** * consensus_2057#0 TGATGGTGACGGGGGCTGGGTGGACACTTACCATAACTCGGCAGTTTTAGGAGTCACAGA 480 consensus_2057#1 TGATGGTGACGGGGGCTGGGTGGACACTTACCATAACTCGGCAGCTTTAGGAGTCACGGA 400 consensus_2057#2 ------------------------------------------------------------ consensus_2057#0 TGCTGTGCAGGATATTTCACTAGATAATAACAAGGACAAGAATATGAATGCCACCTCTGC 540 consensus_2057#1 TGCTGTGCAGGATATTTCACTAGATAATAACAAGGACAAGAATATGAATGCCACCTCTGC 460 consensus_2057#2 ------------------------------------------------------------ consensus_2057#0 AACATGTGCTGATGANGATGATGGAGACGACGATGATGGCGAAGCAGCAGATATGGAAGA 600 consensus_2057#1 AACATGTGCTGATGAGGATGATGGAGACGACGATGATGGCGAAGCAGCAGAT-------- 512 consensus_2057#2 ------------------------------------------------------------ consensus_2057#0 GTAT 604 consensus_2057#1 ---- consensus_2057#2 ---- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |