These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2062#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 590 fasta sequence [ACGAGCACACAACAGAGGAGAGCGCTGTCGAGAGCGGAGCGCACGGAGGGCGGAACGATGCGACTGAAAGACCCGCTAAAACGACGAAAACCGTCCGAAAATGCCGATCCTCGCTGGGCAGATGCTGGGGGGTAGACATGATTCGGGAACTGGGGATTCCTGTGATATTCTACCTGTCATGATAAAGGAGAGGGAAGTCGCCTGAGCCTTCTATCATGGATTGAGTCGGAACTTCCATCAAGCCACTATTTAAGACTGGCACAAGTCAGATAACTCCAGCCTGGTGGGAAGATAAAAGAATGTGCAGAAGAAGACGTCTTTAACCCATGCAACTGGATATAACTGAAGTGGAGCGTTGCTTAATGCGAAGATTGCGTTGTTTAACGTGAAGATTGCAAGTCGTTTGCCATTTTAGCAAAGTTTTTGACAACCTTTTTTTCTGTCTGGACATAATAC-GGATATTTTTTTCCCCCCAAAACGGAAACATGGACACTGGAAGTGGAATTGAAAACTGAAAATGTCCGGGGAAAAGCCACATTTCCCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCG] [+] EMBL CA329889 [ACGAGCACACAACAGAGGAGAGCGCTGTCGAGAGCGGAGCGCACGGAGGGCGGAACGATGCGACTGAAAGACCCGCTAAAACGACGAAAACCGTCCGAAAATGCCGATCCTCGCTGGGCAGATGCTGGGGGGTAGACATGATTCGGGAACTGGGGATTCCTGTGATATTCTACCTGTCATGATAAAGGAGAGGGAAGTCGCCTGAGCCTTCTATCATGGATTGAGTCGGAACTTCCATCAAGCCACTATTTAAGACTGGCACAAGTCAGATAACTCCAGCCTGGTGGGAAGATAAAAGAATGTGCAGAAGAAGACGTCTTTAACCCATGCAACTGGATATAACTGAAGTGGAGCGTTGCTTAATGCGAAGATTGCGTTGTTTAACGTGAAGATTGCAAGTCGTTTGCCATTTTAGCAAAGTTTTTGACAACCTTTTTTTCTGTCTGGACATAATAC GGATATTTTTTTCCCCCCAAAACGGAAACATGGACACTGGAAGTGGAATTGAAAACTGAAAATGTCCGGGGAAAAGCCACATTTCCCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCG] [+] EMBL FR0057690 [ AAGACCCGCTAAAACGACGAAAACCGTCCGAAAATGCCGATCCTCGCTGGGCAGATGCTGGGGGGTAGACATGATTCGGGAACTGGGGATTCCTGTGATATTCTACCTGTCATGATAAAGGAGAGGGAAGTCGCCTGAGCCTTCTATCATGGATTGAGTCGGAACTTCCATCAAGCCACTATTTAAGACTGGCACAAGTCAGATAACTCCAGCCTGGTGGGAAGATAAAAGAATGTGCAGAAGAAGACGTCTTTAACCCATGCAACTGGATATAACTGAAGTGGAGCGTTGCTTAATGCGAAGATTGCGTTGTTTAACGTGAAGATTGCAAGTCGTTTGCCATTTTAGCAAAGTTTTTGACAACCTTTTTTTCTGTCTGGACATAATAC GGATATTTTTTCCC ] [+] EMBL FR0057526 [ TGATTCGGGAACTGGGGATTCCTGTGATATTCTACCTGTCATGATAAAGGAGAGGGAAGTCGCCTGAGCCTTCTATCATGGATTGAGTCGGAACTTCCATCAAGCCACTATTTAAGACTGGCACAAGTCAGATAACTCCAGCCTGGTGGGAAGATAGAAGAATGTGCAGAAGAAGACGTCTTTAACCCATGCAACTGGATATAACTGAAGTGGAGCGTTGCTTAATGCGAAGATTGCGTTGTTTAACGTGAAGATTGCAAGTCGCTTGCCATTTTAGCACAGGTTTTGACAACCTTTTTTTCTGTCTGGGCAGAATACGGGATATTTTTTTCCCCCCAAA ] consensusID : consensus_2062#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 60 fasta sequence [CCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCGCATTTTTAAAA] [+] EMBL CA333395 [CCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCGCATTTTTAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2062#0 ACGAGCACACAACAGAGGAGAGCGCTGTCGAGAGCGGAGCGCACGGAGGGCGGAACGATG 60 consensus_2062#1 ------------------------------------------------------------ consensus_2062#0 CGACTGAAAGACCCGCTAAAACGACGAAAACCGTCCGAAAATGCCGATCCTCGCTGGGCA 120 consensus_2062#1 ------------------------------------------------------------ consensus_2062#0 GATGCTGGGGGGTAGACATGATTCGGGAACTGGGGATTCCTGTGATATTCTACCTGTCAT 180 consensus_2062#1 ------------------------------------------------------------ consensus_2062#0 GATAAAGGAGAGGGAAGTCGCCTGAGCCTTCTATCATGGATTGAGTCGGAACTTCCATCA 240 consensus_2062#1 ------------------------------------------------------------ consensus_2062#0 AGCCACTATTTAAGACTGGCACAAGTCAGATAACTCCAGCCTGGTGGGAAGATAAAAGAA 300 consensus_2062#1 ------------------------------------------------------------ consensus_2062#0 TGTGCAGAAGAAGACGTCTTTAACCCATGCAACTGGATATAACTGAAGTGGAGCGTTGCT 360 consensus_2062#1 ------------------------------------------------------------ consensus_2062#0 TAATGCGAAGATTGCGTTGTTTAACGTGAAGATTGCAAGTCGTTTGCCATTTTAGCAAAG 420 consensus_2062#1 ------------------------------------------------------------ consensus_2062#0 TTTTTGACAACCTTTTTTTCTGTCTGGACATAATACGGATATTTTTTTCCCCCCAAAACG 480 consensus_2062#1 ------------------------------------------------------------ consensus_2062#0 GAAACATGGACACTGGAAGTGGAATTGAAAACTGAAAATGTCCGGGGAAAAGCCACATTT 540 consensus_2062#1 ------------------------------------------------------------ consensus_2062#0 CCCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCG---------- 590 consensus_2062#1 -CCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCGCATTTTTAAA 59 ************************************************* consensus_2062#0 - consensus_2062#1 A 60 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |