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Takifugu rubripes
cluster # 2062 cluster # 2062       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2062#0 length = 590 sequences # 3  
consensus_2062#1 length = 60 sequences # 1  

consensusID : consensus_2062#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 590
fasta sequence
                              [ACGAGCACACAACAGAGGAGAGCGCTGTCGAGAGCGGAGCGCACGGAGGGCGGAACGATGCGACTGAAAGACCCGCTAAAACGACGAAAACCGTCCGAAAATGCCGATCCTCGCTGGGCAGATGCTGGGGGGTAGACATGATTCGGGAACTGGGGATTCCTGTGATATTCTACCTGTCATGATAAAGGAGAGGGAAGTCGCCTGAGCCTTCTATCATGGATTGAGTCGGAACTTCCATCAAGCCACTATTTAAGACTGGCACAAGTCAGATAACTCCAGCCTGGTGGGAAGATAAAAGAATGTGCAGAAGAAGACGTCTTTAACCCATGCAACTGGATATAACTGAAGTGGAGCGTTGCTTAATGCGAAGATTGCGTTGTTTAACGTGAAGATTGCAAGTCGTTTGCCATTTTAGCAAAGTTTTTGACAACCTTTTTTTCTGTCTGGACATAATAC-GGATATTTTTTTCCCCCCAAAACGGAAACATGGACACTGGAAGTGGAATTGAAAACTGAAAATGTCCGGGGAAAAGCCACATTTCCCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCG]

[+] EMBL CA329889             [ACGAGCACACAACAGAGGAGAGCGCTGTCGAGAGCGGAGCGCACGGAGGGCGGAACGATGCGACTGAAAGACCCGCTAAAACGACGAAAACCGTCCGAAAATGCCGATCCTCGCTGGGCAGATGCTGGGGGGTAGACATGATTCGGGAACTGGGGATTCCTGTGATATTCTACCTGTCATGATAAAGGAGAGGGAAGTCGCCTGAGCCTTCTATCATGGATTGAGTCGGAACTTCCATCAAGCCACTATTTAAGACTGGCACAAGTCAGATAACTCCAGCCTGGTGGGAAGATAAAAGAATGTGCAGAAGAAGACGTCTTTAACCCATGCAACTGGATATAACTGAAGTGGAGCGTTGCTTAATGCGAAGATTGCGTTGTTTAACGTGAAGATTGCAAGTCGTTTGCCATTTTAGCAAAGTTTTTGACAACCTTTTTTTCTGTCTGGACATAATAC GGATATTTTTTTCCCCCCAAAACGGAAACATGGACACTGGAAGTGGAATTGAAAACTGAAAATGTCCGGGGAAAAGCCACATTTCCCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCG]
[+] EMBL FR0057690            [                                                                   AAGACCCGCTAAAACGACGAAAACCGTCCGAAAATGCCGATCCTCGCTGGGCAGATGCTGGGGGGTAGACATGATTCGGGAACTGGGGATTCCTGTGATATTCTACCTGTCATGATAAAGGAGAGGGAAGTCGCCTGAGCCTTCTATCATGGATTGAGTCGGAACTTCCATCAAGCCACTATTTAAGACTGGCACAAGTCAGATAACTCCAGCCTGGTGGGAAGATAAAAGAATGTGCAGAAGAAGACGTCTTTAACCCATGCAACTGGATATAACTGAAGTGGAGCGTTGCTTAATGCGAAGATTGCGTTGTTTAACGTGAAGATTGCAAGTCGTTTGCCATTTTAGCAAAGTTTTTGACAACCTTTTTTTCTGTCTGGACATAATAC GGATATTTTTTCCC                                                                                                                        ]
[+] EMBL FR0057526            [                                                                                                                                          TGATTCGGGAACTGGGGATTCCTGTGATATTCTACCTGTCATGATAAAGGAGAGGGAAGTCGCCTGAGCCTTCTATCATGGATTGAGTCGGAACTTCCATCAAGCCACTATTTAAGACTGGCACAAGTCAGATAACTCCAGCCTGGTGGGAAGATAGAAGAATGTGCAGAAGAAGACGTCTTTAACCCATGCAACTGGATATAACTGAAGTGGAGCGTTGCTTAATGCGAAGATTGCGTTGTTTAACGTGAAGATTGCAAGTCGCTTGCCATTTTAGCACAGGTTTTGACAACCTTTTTTTCTGTCTGGGCAGAATACGGGATATTTTTTTCCCCCCAAA                                                                                                                 ]


>consensus_2062#0 ACGAGCACACAACAGAGGAGAGCGCTGTCGAGAGCGGAGCGCACGGAGGGCGGAACGATG CGACTGAAAGACCCGCTAAAACGACGAAAACCGTCCGAAAATGCCGATCCTCGCTGGGCA GATGCTGGGGGGTAGACATGATTCGGGAACTGGGGATTCCTGTGATATTCTACCTGTCAT GATAAAGGAGAGGGAAGTCGCCTGAGCCTTCTATCATGGATTGAGTCGGAACTTCCATCA AGCCACTATTTAAGACTGGCACAAGTCAGATAACTCCAGCCTGGTGGGAAGATAAAAGAA TGTGCAGAAGAAGACGTCTTTAACCCATGCAACTGGATATAACTGAAGTGGAGCGTTGCT TAATGCGAAGATTGCGTTGTTTAACGTGAAGATTGCAAGTCGTTTGCCATTTTAGCAAAG TTTTTGACAACCTTTTTTTCTGTCTGGACATAATACGGATATTTTTTTCCCCCCAAAACG GAAACATGGACACTGGAAGTGGAATTGAAAACTGAAAATGTCCGGGGAAAAGCCACATTT CCCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCG



consensusID : consensus_2062#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 60
fasta sequence
                              [CCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCGCATTTTTAAAA]

[+] EMBL CA333395             [CCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCGCATTTTTAAAA]


>consensus_2062#1 CCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCGCATTTTTAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2062#0      ACGAGCACACAACAGAGGAGAGCGCTGTCGAGAGCGGAGCGCACGGAGGGCGGAACGATG 60
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      CGACTGAAAGACCCGCTAAAACGACGAAAACCGTCCGAAAATGCCGATCCTCGCTGGGCA 120
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      GATGCTGGGGGGTAGACATGATTCGGGAACTGGGGATTCCTGTGATATTCTACCTGTCAT 180
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      GATAAAGGAGAGGGAAGTCGCCTGAGCCTTCTATCATGGATTGAGTCGGAACTTCCATCA 240
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      AGCCACTATTTAAGACTGGCACAAGTCAGATAACTCCAGCCTGGTGGGAAGATAAAAGAA 300
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      TGTGCAGAAGAAGACGTCTTTAACCCATGCAACTGGATATAACTGAAGTGGAGCGTTGCT 360
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      TAATGCGAAGATTGCGTTGTTTAACGTGAAGATTGCAAGTCGTTTGCCATTTTAGCAAAG 420
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      TTTTTGACAACCTTTTTTTCTGTCTGGACATAATACGGATATTTTTTTCCCCCCAAAACG 480
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      GAAACATGGACACTGGAAGTGGAATTGAAAACTGAAAATGTCCGGGGAAAAGCCACATTT 540
consensus_2062#1      ------------------------------------------------------------
                                                                                  

consensus_2062#0      CCCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCG---------- 590
consensus_2062#1      -CCTTGTGTATTTGATATTCCAATGCTGTTTTAAATAAACTTTATTATCGCATTTTTAAA 59
                       *************************************************          

consensus_2062#0      -
consensus_2062#1      A 60
                       




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)