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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2067#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 726 fasta sequence
[GTGATGTGACGGCAACAGTACTCAAATATTCTTCCACTGGACACGTTTTATTTTCCTGTCAGACTTGGTTCTTTTTACTCATTTATCTATTTAATTGTCCCTAAAAAGGCGTCAAGATCGAGGTTAAAAAAAAAGTAGGTAAGATTCGCTGTAAAACAAACTTTTTATTTTCTCTTTCGTCTCCATTGACGACTCAGATTTTGTGGAAGTTAGCTTTGCAGACTGCAAACTGTCCAGACGCACGCATAACAAACAAACGGGTTTTAGGTTTTTTATTTTCAAAACTACTTGTATTTAGTCAGCTGACATTGCACATTTATAACCTGTCGAGCAGAGGCCACTCACGCCCAGTCAGAAATGCATCTAGCAGTGCTGCTGGTAGCGTCTGTGCTCTCTGTGGGCACACTCGCCCTCGACAATGGACTGATGAGGACACCTCCAATGGGATGGTTGGCATGGGAGAGGTTTCGCTGTGACATTGATTGTGATCAAGACCCTAAGAATTGCATTAGTGAGAATCTGTTCACCGACATGGCCGACAGACTCTCGCAGGATGGCTGGAAGGATCTTGGCTACGTGTATGTGAACATCGATGACTGTTGGTCCTCGAAAGAGAGAGATGAGAAAGGGCGGCTGCAGCCCGACCCTANAAGATTTCCTGGAGGCATCCCTAAACTGGCACGCTACATGCACGACAGGGGCCTCANACTGGGCATCTTATGGNGA]
[+] EMBL CA332925 [GTGATGTGACGGCAACAGTACTCAAATATTCTTCCACTGGACACGTTTTATTTTCCTGTCAGACTTGGTTCTTTTTACTCATTTATCTATTTAATTGTCCCTAAAAAGGCGTCAAGATCGAGGTTAAAAAAAAAGTAGGTAAGATTCGTTGTAAAACAAACTTTTTATTTTCTCTTTCGTCTCCATTGACGACTCAGATTTTGTGGAAGTTAGCTTTGCAGACTGCAAACTGTCCAGACGCACGCATAACAAACAAACGGTTTTTAGGTTTTTTATTTTCAAAACTACTTGTATTTAGTCAGCTGACATTGCACATTTATAACCTGTCGAGCAGAGGCCACTCACGCCCAGTCAGAAATGCATCTAGCAGTGCTGCTGGTAGCGTCTGTGCTCTCTGTGGGCACACTCGCCCTCGACAATGGACTGATGAGGACACCTCCAATGGGATGGTTGGCATGGGA ]
[+] EMBL FR0059664 [ GTTCTTTTTACTCATTTATCTATTTAATTGTCCCTAAAAAGGCGTCAAGATCGAGGTTAAAAAAAAAGTAGGTAAGATTCGCTGTAAAACAAACTTTTTATTTTCTCTTTCGTCTCCATTGACGACTCAGATTTTGTGGAAGTTAGCTTTGCAGACTGCAAACTGTCCAGACGCACGCATAACAAACAAACGGGTTTTAGGTTTTTTATTTTCAAAACTACTTGTATTTAGTCAGCTGACA ]
[+] EMBL FR0061424 [ CGTCTGTGCTCTCTGTGGGCACACTCGCCCTCGACAATGGACTGATGAGGACACCTCCAATGGGATGGTTGGCATGGGAGAGGTTTCGCTGTGACATTGATTGTGATCAAGACCCTAAGAATTGCATTAGTGAGAATCTGTTCACCGACATGGCCGACAGACTCTCGCAGGATGGCTGGAAGGATCTTGGCTACGTGTATGTGAACATCGATGACTGTTGGTCCTCGAAAGAGAGAGATGAGAAAGGGCGGCTGCAGCCCGACCCTANAAGATTTCCTGGAGGCATCCCTAAACTGGCACGCTACATGCACGACAGGGGCCTCANACTGGGCATCTTATGGNGA]
consensusID : consensus_2067#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence
[ACACTTAACATTTGACATCCAGAGCTCACCTGTCGTGGTTTTCTTTCTGCAGAAATGCATCTAGCACCGCTGCTGGTAGCGACTGTGCTCTCTGTGGGCACACTCGCCCTCGACAATGGACTGATGAGGACACCTCCAATGTGATGGTTGGCATGGGAGAGGTTTCGCTGTGACATTGATTGTGATCAAGACCCTAAGAATTGCATTAGTGAGAATCTGTTCACCGACATGGCCGACAGACTCTCGCAGGATGGCTGGAAGGAACTTGACTACGTGTATGTGAACATCGATGACTGTTGGTCCT]
[+] EMBL FR0061466 [ACACTTAACATTTGACATCCAGAGCTCACCTGTCGTGGTTTTCTTTCTGCAGAAATGCATCTAGCACCGCTGCTGGTAGCGACTGTGCTCTCTGTGGGCACACTCGCCCTCGACAATGGACTGATGAGGACACCTCCAATGTGATGGTTGGCATGGGAGAGGTTTCGCTGTGACATTGATTGTGATCAAGACCCTAAGAATTGCATTAGTGAGAATCTGTTCACCGACATGGCCGACAGACTCTCGCAGGATGGCTGGAAGGAACTTGACTACGTGTATGTGAACATCGATGACTGTTGGTCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2067#0 GTGATGTGACGGCAACAGTACTCAAATATTCTTCCACTGGACACGTTTTATTTTCCTGTC 60
consensus_2067#1 ------------------------------------------------------------
consensus_2067#0 AGACTTGGTTCTTTTTACTCATTTATCTATTTAATTGTCCCTAAAAAGGCGTCAAGATCG 120
consensus_2067#1 ------------------------------------------------------------
consensus_2067#0 AGGTTAAAAAAAAAGTAGGTAAGATTCGCTGTAAAACAAACTTTTTATTTTCTCTTTCGT 180
consensus_2067#1 ------------------------------------------------------------
consensus_2067#0 CTCCATTGACGACTCAGATTTTGTGGAAGTTAGCTTTGCAGACTGCAAACTGTCCAGACG 240
consensus_2067#1 ------------------------------------------------------------
consensus_2067#0 CACGCATAACAAACAAACGGGTTTTAGGTTTTTTATTTTCAAAACTACTTGTATTTAGTC 300
consensus_2067#1 ----------------------------------------------------------AC 2
*
consensus_2067#0 AGCTGACATTGCACATTTATAACCTGTCGAGCAGAGGCCACTCACGCCCAGTCAGAAATG 360
consensus_2067#1 ACTTAACATTTGACATCCAGAGCTCACCTGTCGTGGTTTTCTTTCT-----GCAGAAATG 57
* * ***** **** * * * * * * ** * ********
consensus_2067#0 CATCTAGCAGTGCTGCTGGTAGCGTCTGTGCTCTCTGTGGGCACACTCGCCCTCGACAAT 420
consensus_2067#1 CATCTAGCACCGCTGCTGGTAGCGACTGTGCTCTCTGTGGGCACACTCGCCCTCGACAAT 117
********* ************* ***********************************
consensus_2067#0 GGACTGATGAGGACACCTCCAATGGGATGGTTGGCATGGGAGAGGTTTCGCTGTGACATT 480
consensus_2067#1 GGACTGATGAGGACACCTCCAATGTGATGGTTGGCATGGGAGAGGTTTCGCTGTGACATT 177
************************ ***********************************
consensus_2067#0 GATTGTGATCAAGACCCTAAGAATTGCATTAGTGAGAATCTGTTCACCGACATGGCCGAC 540
consensus_2067#1 GATTGTGATCAAGACCCTAAGAATTGCATTAGTGAGAATCTGTTCACCGACATGGCCGAC 237
************************************************************
consensus_2067#0 AGACTCTCGCAGGATGGCTGGAAGGATCTTGGCTACGTGTATGTGAACATCGATGACTGT 600
consensus_2067#1 AGACTCTCGCAGGATGGCTGGAAGGAACTTGACTACGTGTATGTGAACATCGATGACTGT 297
************************** **** ****************************
consensus_2067#0 TGGTCCTCGAAAGAGAGAGATGAGAAAGGGCGGCTGCAGCCCGACCCTANAAGATTTCCT 660
consensus_2067#1 TGGTCCT----------------------------------------------------- 304
*******
consensus_2067#0 GGAGGCATCCCTAAACTGGCACGCTACATGCACGACAGGGGCCTCANACTGGGCATCTTA 720
consensus_2067#1 ------------------------------------------------------------
consensus_2067#0 TGGNGA 726
consensus_2067#1 ------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |