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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2075#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 682 fasta sequence
[AGGAAAAGGGACTGATTGGACTTTGGTAACCTGTGTGACGACGGGCACCAACGTGTGGCCACTAACCCGAAAGCCAATGTGTGTGTGGGGTGTGCAGAGGGCCAGCAGCACATGCACAGACACAGAAGCGCACGTAGATTCACTCGTCTGAGGGGACATCATCTCTTCTTTCTTGTGTTCCTCATTCTCGTAGCACAATGCCGCATTTCAGAACCGCCATATTGTTTTTACAGGCTGCTCTGCTCGTTCCAGGAGTCAAAGTCCTTTTTTCTAAGGAGAATAATCAGATTTAAGTTTATTTACCAAGATCCAACTCGGCGTTGGGTCAATTGCTGCAGATTTTGCTAACGTTTAAAACTCACTCTCTGGAGGTCAATTATTTTTTAAAAATAGGGTGCTACATCCTTATTTGTTCAAATGTTTCTCTCATGGTCCCTTTTTATGTGTTTGTATATAAGAGAATCATTTTGGG-TTTTTTTGAGTTTTGTGATACCGGTGTGTTTAATTTGAATCGGTCCAGTTTAAGAATTTGTAGGAGATTTAGTTGAGCCTAATCCAAAGAAATCAGCAGCCGCCAATGAGATTTTTATGTGCTCTAAGAGGCAGTAGCCATCATTTCAGTGTTTTTCATCCATCCATCGATGCACTTTACAGATTCGGTTAATCAGAATGAACTATATTT]
[+] EMBL CA330275 [AGGAAAAGGGACTGATTGGACTTTGGTAACCTGTGTGACGACGGGCACCAACGTGTGGCCACTAACCCGAAAGCCAATGTGTGTGTGGGGTGTGCAGAGGGCCAGCAGCACATGCACAGACACAGAAGCGCACGTAGATTCACTCGTCTGAGGGGACATCATCTCTTCTTTCTTGTGTTCCTCATTCTCGTAGCACAATGCCGCATTTCAGAACCGCCATATTGTTTTTACAGGCTGCTCTGCTCGTTCCAGGAGTCAAAGTCCTTTTTTCTAAGGAGAATAATCAGATTTAAGTTTATTTACCAAGATCCAACTCGGCGTTGGGTCAATTGCTGCAGATTTTGCTAACGTTTAAAACTCACTCTCTGGAGGTCAATTATTTTTTAAAAATAGGGTGCTACATCCTTATTTGTTCAAATGTTTCTCTCATGGTCCCTTTTTATGTGTTTGTTTTT GTGAATCATTTTGGGTTTTTTTTGAGTTTTGTGATACCGGTGTGTTTAATTTGAATCGGTCCAGTTTAAGAATTTGTAGGAGATTTAGT ]
[-] EMBL CA331259 [ ATTTCAGAACCGCCATATTGTTTTTACAGGCTGCTCTGCTCGTTCCAGGAGTCAAAGTCCTTTTTTCTAAGGAGAATAATCAGATTTAAGTTTATTTACCAAGATCCAACTCGGCGTTGGGTCAATTGCTGCAGATTTTGCTAACGTTTAAAACTCACTCTCTGGAGGTCAATTATTTTTTAAAAATAGGGTGCTACATCCTTATTTGTTCAAATGTTTCTCTCATGGTCCCTTTTTATGTGTTTGTATATAAGAGAATCATTTTGGG TTTTTTTGAGTTTTGTGATACCGGTGTGTTTAATTTGAATCGGTCCAGTTTAAGAATTTGTAGGAGATTTAGTTGAGCCTAATCCAAAGAAATCAGCAGCCGCCAATGAGATTTTTATGTGCTCTAAGAGGCAGTAGCCATCATTTCAGTGTTTTTCATCCATCCATCGATGCACTTTACAGATTCGGTTAATCAGAATGAACTATATTT]
consensusID : consensus_2075#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 480 fasta sequence
[TTTTTTTTTTTCTTAGCCATTTTTTTTATCATCGGGCTAATGATTTGAGACCTCAGCAGAATATGCAGAGTAAAAACCCTGAAGCTCTTCAGGGGAAGCAACAGCAGACAAACACAGGAGACGTTATCCATCTGCCACAAAGAGGGACAAAAAAAGAGTTGTTTTTGACAATTAACACTTGAAATGATGAAGGCACCTGAAAACAGTTACACTAAATGTAAACTGTACTTTGGAGTTCCGTCTTTACCTCTCAAGATCTTCATTCAACTTTCTCTTCTCATGGACTGAACCACAACACTAACAAAGAGGAAGAACCTCAAATCAGAATTTAAAAGAAAGTAAATTTAAACTATTCAACGACTAAAACGTTTTGAGTTTAAATAAACCACTTACAAAGCTTGTTTACTTAAAATATAGTTCATTCTGATTAATAGAATCTGTAAAGTGCATCGATGGATGGATGAAAAACACTGAAATGAT]
[+] EMBL CA332589 [TTTTTTTTTTTCTTAGCCATTTTTTTTATCATCGGGCTAATGATTTGAGACCTCAGCAGAATATGCAGAGTAAAAACCCTGAAGCTCTTCAGGGGAAGCAACAGCAGACAAACACAGGAGACGTTATCCATCTGCCACAAAGAGGGACAAAAAAAGAGTTGTTTTTGACAATTAACACTTGAAATGATGAAGGCACCTGAAAACAGTTACACTAAATGTAAACTGTACTTTGGAGTTCCGTCTTTACCTCTCAAGATCTTCATTCAACTTTCTCTTCTCATGGACTGAACCACAACACTAACAAAGAGGAAGAACCTCAAATCAGAATTTAAAAGAAAGTAAATTTAAACTATTCAACGACTAAAACGTTTTGAGTTTAAATAAACCACTTACAAAGCTTGTTTACTTAAAATATA ]
[+] EMBL CA329807 [ ATTTTTTTTATCATCGTGCTAATGATTTGAGACCTCAGCAGAATATGCAGAGTAAAAACCCTGAAGCTCTTCAGGGGAAGCAACAGCAGACAAACACAGGAGACGTTATCCATCTGCCACAAAGAGGGACAAAAAAAGAGTTGTTTTTGACAATTAACACTTGAAATGATGAAGGCACCTGAAAACAGTTACACTAAATGTAAACTGTACTTTGGAGTTCCGTCTTTACCTCTCAAGATCTTCATTCAACTTTCTCTTCTCATGTACTGAACCACAACACTAACAAAGAGGAAGAACCTCAAATCAGAATTTAAAAGAAAGTAAATTTAAACTATTCAACGACTAAAACGTTTTGAGTTTAAATAAACCACTTACAAAGCTTGTTTACTTAAAATATAGTTCATTCTGATTAATAGAATCTGTAAAGTGCATCGATGGATGGATGAAAAACACTGAAATGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2075#0 AGGAAAAGGGACTGATTGGACTTTGGTAACCTGTGTGACGACGGGCACCAACGTGTGGCC 60
consensus_2075#1 ------------------------------------------------------------
consensus_2075#0 ACTAACCCGAAAGCCAATGTGTGTGTGGGGTGTGCAGAGGGCCAGCAGCACATGCACAGA 120
consensus_2075#1 ------------------------------------------------------------
consensus_2075#0 CACAGAAGCGCACGTAGATTCACTCGTCTGAGGGGACATCATCTCTTCTTTCTTGTGTTC 180
consensus_2075#1 ------------------------------------TTTTTTTTTTTCTTAGCCATTTTT 24
* * * ***** * **
consensus_2075#0 CTCATTCTCGTAGCA-CAATGCCGCATTTCAGAACCGCCATATTGTTTTTACAGGCTGCT 239
consensus_2075#1 TTTATCATCGGGCTAATGATTTGAGACCTCAG---CAGAATATGCAGAGTAAAAACCCTG 81
* ** *** * ** * **** * **** ** * *
consensus_2075#0 CTGCTCGTTCCAGGAGTCAAAGTCCTTTTTTCTAAGGAGAA--TAATCAGATTTAAGTTT 297
consensus_2075#1 AAGCTCTTCAGGGGAAGCAACAGCAGACAAACACAGGAGACGTTATCCATCTGCCACAAA 141
**** * *** *** * * ****** ** ** * *
consensus_2075#0 ATTTACCAAGATCCAACTCGGCGTTGG-GTCAATTGCTGCAGATTTTGCTAACGTTTAAA 356
consensus_2075#1 GAGGGACAAAAAAAGAGTTGTTTTTGACAATTAACACTTGAAATGATGAAGGCACCTGAA 201
*** * * * * *** * ** * ** ** * * **
consensus_2075#0 ACTCACT-CTCTGGAGGTCAATTATTTTTTAAAAATAGGGTGCTACATCCTTATTTGTTC 415
consensus_2075#1 AACAGTTACACTAAATGTAAACTGTACTTT--------GGAGTTCCGTCTTTACCTCTCA 253
* * * ** * ** ** * * *** ** * * * ** *** * *
consensus_2075#0 AAATGTTTCTCTCATGGTCCCTTTTTATGTGTTTGTATATAAGAGAATCATTTTGGGTTT 475
consensus_2075#1 AGATCTTCATTCAACTTTCTCTTCTCATGGACTGAACCACAACACTAACAAAGAGGAAGA 313
* ** ** * * ** *** * *** * * ** * * ** **
consensus_2075#0 TTTTGAGTTTTGTGATACCGGTGTGTTTAATTTGAATCGGTCCA-GTTTAAGAATTTGTA 534
consensus_2075#1 ACCTCAAATCAGAATTTAAAAGAAAGTAAATTTAAACTATTCAACGACTAAAACGTTTTG 373
* * * * * * ***** ** ** * * *** * ** *
consensus_2075#0 GGAGATTTAGTTGAGCCTAATCCAAAGAAATCAGCAGCCGCCAATGAGATTTTTATGTGC 594
consensus_2075#1 AG---TTTAAATAAACC--ACTTACAAAGCTTGT------TTACTTAAAATATAGTTCAT 422
* **** * * ** * * * * * * * * * * * *
consensus_2075#0 TCTAAGAGGCAGTAGCCATCATTTCAGTGTTTTTCATCCATCCATCGATGCACTTTACAG 654
consensus_2075#1 TCTGATTAATAGAATCTGTAA----AGTG-----CATCGATGGATGGATGAAAAACACTG 473
*** * ** * * * * **** **** ** ** **** * ** *
consensus_2075#0 ATTCGGTTAATCAGAATGAACTATATTT 682
consensus_2075#1 AAATGAT--------------------- 480
* * *
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |