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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2076#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 538 fasta sequence
[CACGCAAGAAACGATCCAAGACGTACATCCTAAGCTCAAACAATGGCTGAGAATATTCAGGATAAGATCAAGGGCTACAGGACTGCTCCGTTTGACGCCAGGTTCCCCAACACCAACCAGACCCGCAACTGTTTCCAGAACTATCTGGACTTCCACAGGTGCAACAAGGCCCTTTCAGCCAAAGACCAGGATGTGTCTCCCTGTGACTGGTACCAGAGGGTTTACAAGAGTCTCTGCCCCATGAGCTGGGTTGCCAAATGGGACGAGCAGGTAGAGAGCGGGTCTTTTCCAGGGAAGATCTGAAATCCCCAGACTGCTGCTGACCAGGACAGTCTACTACATGATATTCTGTTACGCGTCGTTACTACCCATAATACTGATAACTCCAGTGATGTTCACATCAGCATCAAGAGTGATGTTATTAATAACATAAATACGCACAACTTTTTACCTGACTTGTCAAGGTGGAAAGTTACTTGTCCTGTTTCTTTTGTTTCTTTGACATTGGTTAATTAATAAATACAAAGTGGATTTTAAA]
[+] EMBL CA341006 [CACGCAAGAAACGATCCAAGACGTACATCCTAAGCTCAAACAATGGCTGAGAATATTCAGGATAAGATCAAGGGCTACAGGACTGCTCCGTTTGACGCCAGGTTCCCCAACACCAACCAGACCCGCAACTGTTTCCAGAACTATCTGGACTTCCACAGGTGCAACAAGGCCCTTTCAGCCAAAGACCAGGATGTGTCTCCCTGTGACTGGTACCAGAGGGTTTACAAGAGTCTCTGCCCCATGAGCTGGGTTGCCAAATGGGACGAGCAGGTAGAGAGCGGGTCTTTTCCAGGGAAGATCTGAAATCCCCAGACTGCTGCTGACCAGGACAGTCTACTACATGATATTCTGTTACGCGTCGTTACTACCCATAATACTGATAACTCCAGTGATGTTCACATCAGCATCAAGAGTGATGTTATTAATAACATAAATACGCACAACTTTTTACCTGACTTGTCAAGGTGGAAAGTTACTTGTCCTGTTTCTT ]
[+] EMBL CA845474 [ ACGTACATCCTACCCTCAAACAATGGCTGAGAATATTCAGGATAAGATCAAGGGCTACAGGACTGCTCCGTTTGACGCCAGGTTCCCCAACACCAACCAGACCCGCAACTGTTTCCAGAACTATCTGGACTTCCACAGGTGCAACAAGGCCCTTTCAGCCAAAGACCAGGATGTGTCTCCCTGTGACTGGTACCAGAGGGTTTACAAGAGTCTCTGTTCCATGAGCTGGGTTGCCAAATGGGACGAGCAGGTAGAGAGCGGGTCTTTTCCAGGGAAGATCTGAAATCCCCAGACTGCTGCTGACCAGGACAGTCTACTACATGATATTCTGTTACGCGTCGTTACTACCCATAATACTGATAACTCCAGTGATGTTCACATCAGCATCAAGAGTGATGTTATTAATAACATAAATACACACAACTTTTT ]
[+] EMBL CA844545 [ TGCTGCTGACCAGGACAGTCTACTACATGATATTCTGTTACGCGTCGTTACTACCCATAATACTGATAACTCCAGTGATGTTCACATCAGCATCAAGAGTGATGTTATTAATAACATAAATACGCACAACTTTTTACCTGACTTGTCAAGGTGGAAAGTTACTTGTCCTGTTTCTTTTGTTTCTTTGACATTGGTTAATTAATAAATACAAAGTGGATTTTAAA]
consensusID : consensus_2076#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence
[ATAAGATCAAGGGCTACAGGACTGCTCCGTTTGACGCCAGGTTCCCCAACACCAACCAGACCCGCAACTGTTTCCAGAACTATCTGGACTTTCACCAGGGCAACAAGGCCCCTTTCAGCAAAGACCCAGATGTGGCCTCCTGTGCTGGGAACAGAGGGTTTACAGAAATCTCCTGCCCCCTGAGCTGGGTTTGCCAAAGGGGACAACCAGGTAAAAAACGCGGT]
[+] EMBL CA846690 [ATAAGATCAAGGGCTACAGGACTGCTCCGTTTGACGCCAGGTTCCCCAACACCAACCAGACCCGCAACTGTTTCCAGAACTATCTGGACTTTCACCAGGGCAACAAGGCCCCTTTCAGCAAAGACCCAGATGTGGCCTCCTGTGCTGGGAACAGAGGGTTTACAGAAATCTCCTGCCCCCTGAGCTGGGTTTGCCAAAGGGGACAACCAGGTAAAAAACGCGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2076#0 CACGCAAGAAACGATCCAAGACGTACATCCTAAGCTCAAACAATGGCTGAGAATATTCAG 60
consensus_2076#1 ------------------------------------------------------------
consensus_2076#0 GATAAGATCAAGGGCTACAGGACTGCTCCGTTTGACGCCAGGTTCCCCAACACCAACCAG 120
consensus_2076#1 -ATAAGATCAAGGGCTACAGGACTGCTCCGTTTGACGCCAGGTTCCCCAACACCAACCAG 59
***********************************************************
consensus_2076#0 ACCCGCAACTGTTTCCAGAACTATCTGGACTTCCACAGGTGCAACAAGGCCCTTTCAGCC 180
consensus_2076#1 ACCCGCAACTGTTTCCAGAACTATCTGGACTTTCACCAGGGCAACAAGGCCCCTTTCAGC 119
******************************** *** * ************ ** *
consensus_2076#0 AAAGACCAGGATGTGTCTCCCTGTGACTGGTACCAGAGGGTTTACAAGAGTCTC-TGCCC 239
consensus_2076#1 AAAGACCCAGATGTGGCCTCCTGTG-CTGGGAACAGAGGGTTTACAGAAATCTCCTGCCC 178
******* ****** * ****** **** * ************* * **** *****
consensus_2076#0 CATGAGCTGGGTT-GCCAAATGGGACGAGCAGGTAGAGAGCGGGTCTTTTCCAGGGAAGA 298
consensus_2076#1 CCTGAGCTGGGTTTGCCAAAGGGGACAACCAGGTAAAAAACGCGGT-------------- 224
* *********** ****** ***** * ****** * * ** *
consensus_2076#0 TCTGAAATCCCCAGACTGCTGCTGACCAGGACAGTCTACTACATGATATTCTGTTACGCG 358
consensus_2076#1 ------------------------------------------------------------
consensus_2076#0 TCGTTACTACCCATAATACTGATAACTCCAGTGATGTTCACATCAGCATCAAGAGTGATG 418
consensus_2076#1 ------------------------------------------------------------
consensus_2076#0 TTATTAATAACATAAATACGCACAACTTTTTACCTGACTTGTCAAGGTGGAAAGTTACTT 478
consensus_2076#1 ------------------------------------------------------------
consensus_2076#0 GTCCTGTTTCTTTTGTTTCTTTGACATTGGTTAATTAATAAATACAAAGTGGATTTTAAA 538
consensus_2076#1 ------------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |