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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2126#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 770 fasta sequence
[GCGGCGATGCGCAGCGCTTGATAGCTTTCCTCTTTTCGTGAATGGCCTTATAAATAAATCATACTAAAATTAATTGTCATTCGGGTCCTTGTTGTTAAAGGGCCTCATTAGAAGGATAAATGTCTGATGCATCAGAAATACCTAAAAAAGAAGAGGGGGCTTTAGCACCTGAGCCAGAGGAAGAGTCCGACGACTGCGGTGAGGACGAGGCTACAGAAGACATGGAGTTCCTGCGTAATCTTTTCTCGAGAAACCTGGGCATTGGCACCCCAGACAAGGTTCTCGATGAGCTGACTCTGGAGGGAGTAGCACAGTATATAAAGAGTGGAAAATGTAAAAACATCGTCTGCATGGTTGGAGCAGGGATATCCACCTCGGCTGGGATCCCTGATTTTCGCTCACCTGGAACTGGCCTGTATGCAAACCTGCAGAAGTATAACCTGCCGTACCCAGAGGCGATCTTCCAGATTGATTACTTCAAGAAACATCCAGAGCCTTTCTTTGCTTTGGCCAGAGAGCTTTACCCAGGACAGTTTAAGCCCACAGTTTGTCACTACTTCATGAAGCTGCTGAAGGATAAAGGACTCCTGAGGCGGTGCTACTCGCAGAATATTGACACTCTGGAGCGTGTGGCTGGCCTCGAGGGGGACGACCTCATTGAAGCTCATGGAACGTTCTACACATCCCACTGTGTCAGTTTCTGCTGCCGCAAGGAGTACTCGCTGGGCTGGATGGAAGAAAAAATCTTTTCCGACGACGTTCCCCGGTGT]
[+] EMBL CA590977 [GCGGCGATGCGCAGCGCTTGATAGCTTTCCTCTTTTCGTGAATGGCCTTATAAATAAATCATACTAAAATTAATTGTCATTCGGGTCCTTGTTGTTAAAGGGCCTCATTAGAAGGATAAATGTCTGATGCATCAGAAATACCTAAAAAAGAAGAGGGGGCTTTAGCACCTGAGCCAGAGGAAGAGTCCGACGACTGCGGTGAGGACGAGGCTACAGAAGACATGGAGTTCCTGCGTAATCTTTTCTCGAGAAACCTGGGCATTGGCACCCCAGACAAGGTTCTCGATGAGCTGACTCTGGAGGGAGTAGCACAGTATATAAAGAGTGGAAAATGTAAAAACATCGTCTGCATGGTTGGAGCAGGGATATCCACCTCGGCTGGGATCCCTGATTTTCGCTCACCTGGAACTGGCCTGTATGCAAACCTGCAGAAGTATAACCTGCCGTACCCAGAGGCGATCTTCCAGATTGATTACTTCAAGAAACATCCAGAGCCTTTCTTTGCTTTGGCCAGAGAGCTTTACCCAGGACAGTTTAAGCCCACAGTTTGTCACTACTTCATGAAGCTGCTGAAG ]
[+] EMBL CA846069 [ CGTGAATGGCCTTATAAATAAATCATACTAAAATTAATTGTCATTCGGGTCCTTGTTGTTAAAGGGCCTCATTAGAAGGATAAATGTCTGATGCATCAGAAATACCTAAAAAAGAAGAGGGGGCTTTAGCACCTGAACCAGAGGAAGAGTCCGACGACTGCGGTGAGGACGAGGCTACAGAAGACATGGAGTTCCTGCGTAATCTTTCCTCGAGAAACCTGGGCATTGGCACCCCAGACAAGGTTCTCGATGAGCTGACTCTGGAGGGAGTAGCACAGTATATAAAGAGTGGAAAATGTAAAAACATCGTCTGCATGGTTGGAGCAGGGATATCCACCTCGGCTGGGATCCCTGATTTTCGCTCACCTGGAACTGGCCTGTATGCAAACCTGCAGAAGTATAACCTGCCGTACCCAGAGGCGATCTTCCAGATTGATTACTTCAAGAAACATCCAGAGCCTTTCTTTGCTTTGGCCAGAGAGCTTTACCCAGGACAGTTTAAGCCCACAGTTTGTCACTACTTCATGAAGCTGCTGAAG ]
[+] EMBL CA332885 [ AGAGGGGGCTTTAGCACCAGAGCCAGAGGAAGAGTCCGACGACTGCGGTGAGGACGAGGCTACAGAAGACATGGAGTTCCTGCGTAATCTTTTCTCGAAAAACCTGGGCATTGGCACCCCAGACAAGGTTCTCGATGAGCTGACTCTGGAGGGAGTAGCACAGTATATAAAGAGTGGAAAATGTAAAAACATCGTCTGCATGGTTGGAGCAGGGATATCCACCTCGGCTGGGATCCCTGATTTTCGCTCACCTGGAACTGGCCTGTATGCAAACCTGCAGAAGTATAACCTGCCGTACCCAGAGGCGATCTTCCAGATTGATTACTTCAAGAAACATCCAGAGCCTTTCTTTGCTTTGGCCAGAGAGCTTTACCCAGGACAGTTTAAGCCCACAGTTTGTCACTACTTCATGAAGCTGCTGAAGGATAAAGGACTCCTGAGGCGGTGCTACTCGCAGAATATTGACACTCTGGAGCGTGTGGCTGGCCTCGAGGGGGACGACCTCATTGAAGCTCATGGAACGTTCTACACATCCCACTGTGTCAGTTTCTGCTGCCGCAAGGAGTACTCGCTGGGCTGGATGGAAGAAAAAATCTTTTCCGACGACGTTCCCCGGTGT]
consensusID : consensus_2126#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence
[ACAATAAGATATCTGCGGCGATGCGCAGCGCTTGATAGCTTTCCCTATAACGTGAATGGCCTTATAAATAAATCATACTAAAATTAATTGTCATTCGGGTCCTTGTTGTTAAAGGGCCTCATTAGAAGGATAAATGTCTGATGCATCAGGAAGAGTCCGACGACTGCGGTGAGGACGAGGCTACAGAAGACATGGAGTTCCTGCGTAATCTTTTCTCGAGAAACCTGGGCATTGGCACCCCAGACAAGGTTCTCGATGAGCTGACTCTGGAGGGAGTAGCACAGTATATAAAGAGTGGAAAATGTAAAAACATCGTCTGCATGGTTGGAGCAGGGATATCCACCTCGGCTGGGATCCCTGATTTTCGCTCACCTGGAACTGGCCTGTATGCAAACCTGCAGAAGTATAACCTGCCGTACCCAGAGGCGATCTTCCAGATTGATTACTTCAAGAAACATCCAGAGCCTTTCTTTGCTTTGGGCAGAGAGCTTTACCCAGGACAGTTTAAGCCCACAGTTTGGCACTACTTCATGAAGCTGCTGGAG]
[+] EMBL CA588522 [ACAATAAGATATCTGCGGCGATGCGCAGCGCTTGATAGCTTTCCCTATAACGTGAATGGCCTTATAAATAAATCATACTAAAATTAATTGTCATTCGGGTCCTTGTTGTTAAAGGGCCTCATTAGAAGGATAAATGTCTGATGCATCAGGAAGAGTCCGACGACTGCGGTGAGGACGAGGCTACAGAAGACATGGAGTTCCTGCGTAATCTTTTCTCGAGAAACCTGGGCATTGGCACCCCAGACAAGGTTCTCGATGAGCTGACTCTGGAGGGAGTAGCACAGTATATAAAGAGTGGAAAATGTAAAAACATCGTCTGCATGGTTGGAGCAGGGATATCCACCTCGGCTGGGATCCCTGATTTTCGCTCACCTGGAACTGGCCTGTATGCAAACCTGCAGAAGTATAACCTGCCGTACCCAGAGGCGATCTTCCAGATTGATTACTTCAAGAAACATCCAGAGCCTTTCTTTGCTTTGGGCAGAGAGCTTTACCCAGGACAGTTTAAGCCCACAGTTTGGCACTACTTCATGAAGCTGCTGGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2126#0 --------------GCGGCGATGCGCAGCGCTTGATAGCTTTCCTCTTTTCGTGAATGGC 46
consensus_2126#1 ACAATAAGATATCTGCGGCGATGCGCAGCGCTTGATAGCTTTCCCTATAACGTGAATGGC 60
****************************** * **********
consensus_2126#0 CTTATAAATAAATCATACTAAAATTAATTGTCATTCGGGTCCTTGTTGTTAAAGGGCCTC 106
consensus_2126#1 CTTATAAATAAATCATACTAAAATTAATTGTCATTCGGGTCCTTGTTGTTAAAGGGCCTC 120
************************************************************
consensus_2126#0 ATTAGAAGGATAAATGTCTGATGCATCAGAAATACCTAAAAAAGAAGAGGGGGCTTTAGC 166
consensus_2126#1 ATTAGAAGGATAAATGTCTGATGCATCAG------------------------------- 149
*****************************
consensus_2126#0 ACCTGAGCCAGAGGAAGAGTCCGACGACTGCGGTGAGGACGAGGCTACAGAAGACATGGA 226
consensus_2126#1 -------------GAAGAGTCCGACGACTGCGGTGAGGACGAGGCTACAGAAGACATGGA 196
***********************************************
consensus_2126#0 GTTCCTGCGTAATCTTTTCTCGAGAAACCTGGGCATTGGCACCCCAGACAAGGTTCTCGA 286
consensus_2126#1 GTTCCTGCGTAATCTTTTCTCGAGAAACCTGGGCATTGGCACCCCAGACAAGGTTCTCGA 256
************************************************************
consensus_2126#0 TGAGCTGACTCTGGAGGGAGTAGCACAGTATATAAAGAGTGGAAAATGTAAAAACATCGT 346
consensus_2126#1 TGAGCTGACTCTGGAGGGAGTAGCACAGTATATAAAGAGTGGAAAATGTAAAAACATCGT 316
************************************************************
consensus_2126#0 CTGCATGGTTGGAGCAGGGATATCCACCTCGGCTGGGATCCCTGATTTTCGCTCACCTGG 406
consensus_2126#1 CTGCATGGTTGGAGCAGGGATATCCACCTCGGCTGGGATCCCTGATTTTCGCTCACCTGG 376
************************************************************
consensus_2126#0 AACTGGCCTGTATGCAAACCTGCAGAAGTATAACCTGCCGTACCCAGAGGCGATCTTCCA 466
consensus_2126#1 AACTGGCCTGTATGCAAACCTGCAGAAGTATAACCTGCCGTACCCAGAGGCGATCTTCCA 436
************************************************************
consensus_2126#0 GATTGATTACTTCAAGAAACATCCAGAGCCTTTCTTTGCTTTGGCCAGAGAGCTTTACCC 526
consensus_2126#1 GATTGATTACTTCAAGAAACATCCAGAGCCTTTCTTTGCTTTGGGCAGAGAGCTTTACCC 496
******************************************** ***************
consensus_2126#0 AGGACAGTTTAAGCCCACAGTTTGTCACTACTTCATGAAGCTGCTGAAGGATAAAGGACT 586
consensus_2126#1 AGGACAGTTTAAGCCCACAGTTTGGCACTACTTCATGAAGCTGCTGGAG----------- 545
************************ ********************* **
consensus_2126#0 CCTGAGGCGGTGCTACTCGCAGAATATTGACACTCTGGAGCGTGTGGCTGGCCTCGAGGG 646
consensus_2126#1 ------------------------------------------------------------
consensus_2126#0 GGACGACCTCATTGAAGCTCATGGAACGTTCTACACATCCCACTGTGTCAGTTTCTGCTG 706
consensus_2126#1 ------------------------------------------------------------
consensus_2126#0 CCGCAAGGAGTACTCGCTGGGCTGGATGGAAGAAAAAATCTTTTCCGACGACGTTCCCCG 766
consensus_2126#1 ------------------------------------------------------------
consensus_2126#0 GTGT 770
consensus_2126#1 ----
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |