These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2140#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [GATGAAAGAACACAACAGACAGGAGCACCTGAAGACACTGGACAACGAGGAGAGGAGGAAAGAGGAAGAGCACTACGAGGAGATGAAGAAGAAGCACGCCGATCACCCTAAAATCAATCACCCGGGGAGCCAGAATCAGCTCAAAGAGGTCTGGGAGGAAGCTGATGGCCTGGACCCCGACGACTTCGACCCCAAGACCTTCTTCAAATTGCACGACACAAACGGAGATGGGTTTTTTGATGAACAGGAACTGGAGGCGCTCTTCACCAAGGAGTTGGAGAAAATCTACGACCCCAATAACGAAGAGGACGATATGATCGAGATGGAGGAAGAGAGGCTACGTATGCGGGAGCACGTTATGAACGAGGTGGACACCAACAAAGACAGACTCGTCTCTTTAGAGGAGTTCCTGGTCGCTACTCGGAAAAAGGAATTCCTGGAGCCCGACAGCTGGGAGACGTTGGAGCAGAATCAGGTTTACACAGACGAGGAGATGAGAGAGTTCGAGGAGCACCTCACTCAGCAGGAGCAGGACCTGAACATGAGGTCTGCCGACCTCCAGAAACAGAGAGACGATCTGGAGCGACAACAGGCCGAGCTCAACGCCCAGAAGGTTGAG] [+] EMBL BU806526 [GATGAAAGAACACAACAGACAGGAGCACCTGAAGACACTGGACAACGAGGAGAGGAGGAAAGAGGAAGAGCACTACGAGGAGATGAAGAAGAAGCACGCCGATCACCCTAAAATCAATCACCCGGGGAGCCAGAATCAGCTCAAAGAGGTCTGGGAGGAAGCTGATGGCCTGGACCCCGACGACTTCGACCCCAAGACCTTCTTCAAATTGCACGACACAAACGGAGATGGGTTTTTTGATGAACAGGAACTGGAGGCGCTCTTCACCAAGGAGTTGGAGAAAATCTACGACCCCAATAACGAAGAGGACGATATGATCGAGATGGAGGAAGAGAGGCTACGTATGCGGGAGCACGTTATGAACGAGGTGGACACCAACAAAGACAGACTCGTCTCTTTAGAGGAGTTCCTGGTCGCTACTCGGAAAAAGGAATTCCTGGAGCCCGACAGCTGGGAGACGTTGGAGCAGAATCAGGTTTACACAGACGAGGAGATGAGAGAGTTCGAGGAGCACCTCACTCAGCAGGAGCAGGACCTGAACATGAGGTCTGCCGACCTCCAGAAACAGAGAGACGATCTGGAGCGACAACAGGCCGAGCTCAACGCCCAGAAGGTTGAG] consensusID : consensus_2140#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 609 fasta sequence [TGGGTTGGATCCGGACCCTTTTGACAGTCTGGATACTGTTGCTGGTCCAGCTTCTGTATTTAGAAGCAGTGCCAATAAGCATTGATAAAACAAAAGTCAAGCAACCAGAGAAAGAACCCGAAAAGCCCCCAGCGAGTGTGGACACTGGACTCCACTATGACCACTACCTCAGGGAAGTCATCGATTTTCTCGAAAAAGACGAACATTTCAGAGAAAAGCTCCGCAACACAGACATGGAAGACATCAAGCAAGGCAAGCTGGCAAAAGAGCTGGACTTTGTGGGTCATCACATCAGGACAAAACTGGATGAGTTAAAGAGGCAGGAGGTGAATCGACTCCGGACTCTGATTAAGGCCAAGCAAGACCTCGAAGGAGGCAATGACATATCGGTGGACCACCAGGCTCTTCTCAAGCAGTTTGAGTACTTGAACCACATGAATCCACACACTTTTGAAGTGGATGATCTGGATCTGCTCATCAAATCGGCCACGAACGACCTGGAGAATTACGATAAAGAACGACACGATGAGTTCAAGAGGTATGAAATGATGAAAGAACACAACAGACAGGAGCACCTGAAGACACTGGACAACGAGGAGAGGAGGAAAG] [+] EMBL BU805576 [TGGGTTGGATCCGGACCCTTTTGACAGTCTGGATACTGTTGCTGGTCCAGCTTCTGTATTTAGAAGCAGTGCCAATAAGCATTGATAAAACAAAAGTCAAGCAACCAGAGAAAGAACCCGAAAAGCCCCCAGCGAGTGTGGACACTGGACTCCACTATGACCACTACCTCAGGGAAGTCATCGATTTTCTCGAAAAAGACGAACATTTCAGAGAAAATCTCCGCAACACAGACATGGAAGACATCAAGCAAGGCAAGCTGGCAAAAGAGCTGGACTTTGTGGGTCATCACATCAGGACAAAACTGGATGAGTTAAAGAGGCAGGAGGTGAATCGACTCCGGACTCTGATTAAGGCCAAGCAAGACCTCGAAGGAGGCAATGACATATCGGTGGACCACCAGGCTCTTCTCAAGCAGTTTGAGTACTTGAACCACATGAATCCACACACTTTTGAAGTGGATGATCTGGATCTGCTCATCAAATCGGCCACGAACGACCTGGAGAATTACGATAAAGAACGACACGATGAGTTCAAGAGGTATGAAATGATGAAAGAACACAACAGACAGGAGCACCTGAAG ] [+] EMBL CA589650 [TGGGTTGGATCCGGACCCTTTTGACAGTCTGGATACTGTTGCTGGTCCAGCTTCTGTATTTAGAAGCAGTGCCAATAAGCATTGATAAAACAAAAGTCAAGCAACCAGAGAAAGAACCCGAAAAGCCCCCAGCGAGTGTGGACACTGGACTCCACTATGACCACTACCTCAGGGAAGTCATCGATTTTCTCGAAAAAGACGAACATTTCAGAGAAAAGCTCCGCAACACAGACATGGAAGACATCAAGCAAGGCAAGCTGGCAAAAGAGCTGGACTTTGTGGGTCATCACATCAGGACAAAACTGGATGAGTTAAAGAGGCAGGAGGTGAATCGACTCCGGACTCTGATTAAGGCCAAGCAAGACCTCGAAGGAGGCAATGACATATCGGTGGACCACCAGGCTCTTCTCAAGCAGTTTGAGTACTTGAACCAC ] [+] EMBL CA588927 [ CCGGACCCTTTTGACAGTCTGGATACTGTTGCTGGTCCAGCTTCTGTATTTAGAAGCAGTGCCAATAAGCATTGATAAAACAAAAGTCAAGCAACCAGAGAAAGAACCCGAAAAGCCCCCAGCGAGTGTGGACACTGGACTCCACTATGACCACTACCTCAGGGAAGTCATCGATTTTCTCGAAAAAGACGAACATTTCAGAGAAAAGCTCCGCAACACAGACATGGAAGACATCAAGCAAGGCAAGCTGGCAAAAGAGCTGGACTTTGTGGGTCATCACATCAGGACAAAACTGGATGAGTTAAAGAGGCAGGAGGTGAATCGACTCCGGACTCTGATTAAGGCCAAGCAAGACCTCGAAGGAGGCAATGACATATCGGTGGACCACCAGGCTCTTCTCAAGCAGTTTGAGTACTTGAACCACATGAATCCACACACTTTTGAAGTGGATGATCTGGATCTGCTCATCAAATCGGCCACGAACGACCTGGAGAATTACGATAAAGAACGACACGATGAGTTCAAGAGGTATGAAATGATGAAAGAACACAACAGACAGGAGCACCTGAAGACACTGGACAACGAGGAGAGGAGGAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2140#0 GATGAAAGAACACAACAGACAGGAGCACCTGAAGACACTGGACAACGAGGAGAG-GAGGA 59 consensus_2140#1 ------------------TGGGTTGGATCCGGACCCTTTTGACAGTCTGGATACTGTTGC 42 * * * * * * * * **** *** * * * consensus_2140#0 AAGAGGAAGAGCACTACGAGGAGATGAAGAAGAAGCACGCCGATCACCCTAAAATCAATC 119 consensus_2140#1 TGGTCCAGCTTCTGTATTTAGAAGCAGTGCCAATAAGCATTGATAAAACAAAAGTCAAGC 102 * * * ** ** * * * *** * * *** **** * consensus_2140#0 ACCCGGGGAGCCAGAATCAGCTCAAAGAGGTCTGGGAGGAAGCTGATGGCCTGGACCCCG 179 consensus_2140#1 AACCAG------AGAAAGAACCCGAAAAGCCCCCAGCGAGTGTGGACA--CTGGACTCCA 154 * ** * **** * * * ** ** * * * * ** ****** ** consensus_2140#0 --ACGACTTCGACCCCAAGACCTTCTTCAAATTGCACGACACAAACGGAGAT-------G 230 consensus_2140#1 CTATGACCACTACCTCAGGGAAGTCATCGATTTTCTCGAAAAAGACGAACATTTCAGAGA 214 * *** * *** ** * ** ** * ** * *** * * *** * ** consensus_2140#0 GGTTTTTTGATGAACAGGAACTGGAGGCGCTCTTCA-----------CCAAGGAGTTGGA 279 consensus_2140#1 AAAGCTCCGCAACACAGACATGGAAGACATCAAGCAAGGCAAGCTGGCAAAAGAGCTGGA 274 * * **** * * ** * ** * ** *** **** consensus_2140#0 GAAAATCTACGACCCCAATAACGAAGAGGACGATATGATCGAGATGGAGGAAGAGAGGCT 339 consensus_2140#1 CTTTGTGGGTCATCACATCAGGACAAAACTGGATGAGTTAAAGAGGCAGGAGGTGAATCG 334 * * * ** * * * *** * * *** * **** * ** * consensus_2140#0 ACGTATGCGGGAGCACGTTATGAACGAGGTGGACACCAACAAAGACAGACTCGTCTCTTT 399 consensus_2140#1 AC---TCCGGACTCTGATTAAGGCCAAGCAAGACCTCGAAGGAGGCAA---TGACATATC 388 ** * *** * *** * * ** *** * * ** ** * * * consensus_2140#0 AGAGGAGTTCCTGGTCGCTACTCGGAAAAAGGAATTCCTGGAGCCCGACAGCTGGGAGAC 459 consensus_2140#1 GGTGGACCACCAGGCTCTTCTCAAGCAGTTTGAGTACTTGAACCACATGAATCCACACAC 448 * *** ** ** * * * ** * * ** * * * * * ** consensus_2140#0 GTT-GGAGCAGA--ATCAGGTTTACACAGACGAGGAGATGAGAGAGTTCGAGGAGCACCT 516 consensus_2140#1 TTTTGAAGTGGATGATCTGGATCTGCTCATCAAATCGGCCACGAACGACCTGGAGAATTA 508 ** * ** ** *** ** * * * * * * * **** * consensus_2140#0 CACTCAGCAGGAGCAGGACCTGAACATGAGGTCTGCCGACCTCCAGAAACAGAGAGACGA 576 consensus_2140#1 CGATAAAGAACGACACGATGAGTTCAAGAGGTATG---AAATGATGAAAGAACACAACAG 565 * * * * ** ** * ** ***** ** * * **** * ** consensus_2140#0 TCTGGAGCGACAACAGGCCGAGCTCAACGCCCAGAAGGTTGAG- 619 consensus_2140#1 ACAGGAGCACCTGAAGACACTGGACAACGAGGAGAGGAGGAAAG 609 * ***** * ** * * ***** *** * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |