These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2146#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 385 fasta sequence [AGGCATCGTTTAGATTTGGGCGATGACTACTCCAGTAAGAAGAGGTCTGATGGGCGTGACAGAGACAGAGACCGGGACAGAGACCGCGAGGACCGCTCCAGAGGCAGGGACCGAGATCGGGACAGAGACAGGGATCGGGACAGGGACCGAGACCGGGACAGAGACCGAGACACAAAGCCGCCTAGTGTCCCAGCCAACAGCACACCGATCATCCCAATTATGCCTGCTCTCAAGCAGATGGCTGTGCACCAGCAGATGAACCCGTTCACCAACCTACCACACACACCGCGATACTACGAGATCCTGGAGAAACGGGTGCAGCCTCCCGTCTGGGAATACAAGGAGAGCTTTAGTGACATCATCACACGCCATCAGACGTTTGGTC] [+] EMBL FR0059860 [AGGCATCGTTTAGATTTGGGCGATGACTACTCCAGTAAGAAGAGGTCTGATGGGCGTGACAGAGACAGAGACCGGGACAGAGACCGCGAGGACCGCTCCAGAGGCAGGGACCGAGATCGGGACAGAGACAGGGATCGGGACAGGGACCGAGACCGGGACAGAGACCGAGACACAAAGCCGCCTAGTGTCCCAGCCAACAGCACACCGATCATCCCAATTATGCCTGCTCTCAAGCAGATGGCTGTGCACCAGCAGATGAACCCGTTCACCAACCTACCACACACACCGCGATACTACGAGATCCTGGAGAAACGGGTGCAGCCTt ] [+] EMBL FR0059874 [ GGCATCGTTTAGATTTGGGCGATGACTACTCCAGTAAGAAGAGGTCTGATGGGCGTGACAGAGACAGAGACCGGGACAGAGACCGCGAGGACCGCTCCAGAGGCAGGGACCGAGATCGGGACAGAGACAGGGATCGGGACAGGGACCGAGACCGGGACAGAGACCGAGACACAAAGCCGCCTAGTGTCCCAGCCAACAGCACACCGATCATCCCAATTATGCCTGCTCTCAAGCAGATGGCTGTGCACCAGCAGATGAACCCGTTCACCAACCTACCACACACACCGCGATACTACGA ] [+] EMBL FR0058176 [ ACTACTCCAGTAAGAAGAGGTCTGATGGGCGTGACAGAGACAGAGACCGGGACAGAGACCGCGAGGACCGCTCCAGAGACAGGGACCGAGATCGGGACAGAGACAGGGATCGGGACAGGGACCGAGACCGGGACAGAGACCGAGACACAAAGCCGCCTAGTGTCCCAGCCAACAGCACACCGATCATCCCAATTATGCCTGCTCTCAAGCAGATGGCTGTGCACCAGCAGATGAACCCGTTCACCAACCTACCACACACACCGCGATACTACGAGATCCTGAAGAAACGGTTGCAGCTTCCCGTCTGGGAATACAAGGAGAGCTTTAGTGACATCATCACACGCCATCAGACGTTTGGTC] consensusID : consensus_2146#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 268 fasta sequence [AAGGCAAATATCCGAGAGATTGAGGATTTTGCATACATTANCATAATTGTGCTATGTTAGCTGCTGGCGCGGCACTGGCTAACCAGCAGAACGTGTAGTTATCTTCGACGCAGGGGCACGTGTGTATGGCTAGCGGCGTGACAGAGACAGAGACCGGGACAGAGACCGCGAGGACCGCTCCAGAGACAGGGACCGAGATCGGGACAGAGACAGGGATCGGGACAGGGACCGAGACCGGGACAGAGACCGGAGACACAAAGCCGCCTAG] [+] EMBL FR0060547 [AAGGCAAATATCCGAGAGATTGAGGATTTTGCATACATTANCATAATTGTGCTATGTTAGCTGCTGGCGCGGCACTGGCTAACCAGCAGAACGTGTAGTTATCTTCGACGCAGGGGCACGTGTGTATGGCTAGCGGCGTGACAGAGACAGAGACCGGGACAGAGACCGCGAGGACCGCTCCAGAGACAGGGACCGAGATCGGGACAGAGACAGGGATCGGGACAGGGACCGAGACCGGGACAGAGACCGGAGACACAAAGCCGCCTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2146#0 ------------------------------------------------------------ consensus_2146#1 AAGGCAAATATCCGAGAGATTGAGGATTTTGCATACATTANCATAATTGTGCTATGTTAG 60 consensus_2146#0 ---------AGGCATCGTTTAG--ATTTGGGCG-ATGACTA-CTCCA--GTAAGAAGAGG 45 consensus_2146#1 CTGCTGGCGCGGCACTGGCTAACCAGCAGAACGTGTAGTTATCTTCGACGCAGGGGCACG 120 **** * ** * * ** * ** ** * * * * * * consensus_2146#0 TCTG-ATGG------GCGTGACAGAGACAGAGACCGGGACAGAGACCGCGAGGACCGCTC 98 consensus_2146#1 TGTGTATGGCTAGCGGCGTGACAGAGACAGAGACCGGGACAGAGACCGCGAGGACCGCTC 180 * ** **** ********************************************* consensus_2146#0 CAGAGGCAGGGACCGAGATCGGGACAGAGACAGGGATCGGGACAGGGACCGAGACCGGGA 158 consensus_2146#1 CAGAGACAGGGACCGAGATCGGGACAGAGACAGGGATCGGGACAGGGACCGAGACCGGGA 240 ***** ****************************************************** consensus_2146#0 CAGAGACCG-AGACACAAAGCCGCCTAGTGTCCCAGCCAACAGCACACCGATCATCCCAA 217 consensus_2146#1 CAGAGACCGGAGACACAAAGCCGCCTAG-------------------------------- 268 ********* ****************** consensus_2146#0 TTATGCCTGCTCTCAAGCAGATGGCTGTGCACCAGCAGATGAACCCGTTCACCAACCTAC 277 consensus_2146#1 ------------------------------------------------------------ consensus_2146#0 CACACACACCGCGATACTACGAGATCCTGGAGAAACGGGTGCAGCCTCCCGTCTGGGAAT 337 consensus_2146#1 ------------------------------------------------------------ consensus_2146#0 ACAAGGAGAGCTTTAGTGACATCATCACACGCCATCAGACGTTTGGTC 385 consensus_2146#1 ------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |