These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2165#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 635 fasta sequence [CCTCCCCGCAGACAGCGCGTCCTGTCGCCTTCCTCAGCGCAATG-GTCTCCTGGATCATCTCTAGGCTGGTGGTACTCGTGTTCGGTACACTTTACCCCGCTTACTCGTCTTATAAAGCTGTGAAGTCAAGAGATCTGAAGGAATACGTGAAATGGATGATGTACTGGATAATATTTGCCCTGTTCACCACCGTGGAAGTGTTCACAGACATGTTCCTTTGTTGGCTTCCTTTTTACTATGAGCTGAAGATAGCCTTTGTTGTGTGGCTGCTCTCCCCTTACACGAAAGGCTCCAGCGTGCTGTACAGGAAGTTTGTCCATCCCACACTTTCCTCAAAAGAAAAGGACGTGGATGAATATATCGGGCAAACAAAGGAGAAAATCTGCGACACCCTGGTGCATTATGGGAGAAAAGGACTCAATGTTGCTGCCACAGCCGCAGTCATGGCTGCAACAAAGGGTCAAGGGGTCCTGTCAGACAAACTGAGGAGTTTCAGCATGCAGGATCTGTCTGCGTACCAGTCTGACCCCGCCGAGGCCGATCCTGGACCCACGGCACCCGCAGCAGCGCAGCAGCGCACAAAAACGATGCTGCGCAGCAAATCGGAGGGCTACAGCAAAGCCTCCTCTTAGAGT] [+] EMBL CA591549 [CCTCCCCGCAGACAGCGCGTCCTGTCGCCTTCCTCAGCGCACTGTGTCTCCTGGATCATCTCTAGGCTGGTGGTACTCGTGTTCGGTACACTTTACCCCGCTTACTCGTCTTATAAAGCTGTGAAGTCAAGAGATCTGAAGGAATACGTGAAATGGATGATGTACTGGATAATATTTGCCCTGTTCACCACCGTGGAAGTGTTCACAGACATGTTCCTTTGTTGGCTTCCTTTTTACTATGAGCTGAAGATAGCCTTTGTTGTGTGGCTGCTCTCCCCTTACACGAAAGGCTCCAGCGTGCTGTACAGGAAGTTTGTCCATCCCACACTTTCCTCAAAAGAAAAGGACGTGGATGAATATATCGGGCAAACAAAGGAGAAAATCTGCGACACCCTGGTGCATTATGGGAGAAAAGGACTCAATGTTGCTGCCACAGCCGCAGTCATGGCTGCAACAAAGGGTCAAGGGGTCCTGTCAGACAAACTGAGGAGTTTCAGCATGCAGGATCTGTCTGCGTACCAGTCTGACCCCGCCGAGGCCGATCCTGGACCCACGGCACCCGCAGCAGCGCAGCAGCGCACAAAAACGATGCTGCGCAGCAAATCGGAGGGCTACAGCAAAGCCTCCTCTTAGAGT] [+] EMBL CA589866 [ TCGCCTTCCTCAGCGCAATG GTCTCCTGGATCATCTCTAGGCTGGTGGTACTCGTGTTCGGTACACTTTACCCCGCTTACTCGTCTTATAAAGCTGTGAAGTCAGGAGATCTGAAGGAATACGTGAAATGGATGATGTACTGGATAATATTTGCCCTGTTCACCACCGTGGAAGTGTTCACAGACATGTTCCTTTGTTGGCTTCCTTTTTACTATGAGCTGAATATAGCCTTTGTTGTGTGGCTGCTCTCCCCTTACACGAAAGGCTCCAGCGTGCTGTACAGGAAGTTTGTCCATCCCACACTTTCCTCAAAAGAAAAGGACGTGGATGAATATATCGGGCAAACAAAGGAGAAAATCTGCGACACCCTGGTGCATTATGGGAGAAAAGGACTCAATGTTGCTGCCACAGCCGCAGTCATGGCTGCAACAAAGGGTCAAGGGGTCCTGTCAGACAAACTGAGGAGTTTCAGCATGCAGGATCTGTCTGCGTACCA ] [+] EMBL BU805408 [ TCGCCTTCCTCAGCGCAATG GTCTCCTGGATCATCTCTAGGCTGGTGGTACTCGTGTTCGGTACACTTTACCCCGCTTACTCGTCTTATAAAGCTGTGAAGTCAAGAGATCTGAAGGAATACGTGAAATGGATGATGTACTGGATAATATTTGCCCTGTTCACCACCGTGGAAGTGTTCACAGACATGTTCCTTTGTTGGCTTCCTTTTTACTATGAGCTGAAGATAGCCTTTGTTGTGTGGCTGCTCTCCCCTTACACGAAAGGCTCCAGCGTGCTGTACAGGAAGTTTGTCCATCCCACACTTTCCTCAAAAGAAAAGGACGTGGATGAATATATCGGGCAAACAAAGGAGAAAATCTGCGACACCCTGGTGCATTATGGGAGAAAAGGACTCAATGTTGCTGCCACAGCCGCAGTCATGGCTGCAACAAAGGGTCAAGGGGTCCTGTCAGACAAACTGAGGAGTTTCAGCATG ] consensusID : consensus_2165#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [GGGAACGAAGGTGATTCTGACTGTCTGTGGCTGTGACCCTTCAGGTGAAATGGATGGTGTACTGGATAATATTTGCCCTGTTCACCACCGTGGAAGTGTTCACAGACATGTTCCTTTGTTGGCTTCCTTTTTACTATGAGCTGAAGATAGCCTTTGTTGTGTGGCTGCTCTCCCCTTACACGAAAGGCTCCAGCGTGCTGTACAGGAAGTTTGTCCATCCCACACTTTCCTCAAAAGAAAAGGACGTGGATGAATATATCGGGCAAACAAAGGAGAAAATCTGCGACACCCTGGTGCATTATGGGAGAAAAGGACTCAATGTTGCTGCCACAGCCGCAGTCATGGCTGCAACAAAGGGTCAAGGGGTCCTGTCAGACAAACTGAGGAGTTTCAGCATGCAGGATCTGTCTGCGTACCAGTCTGACCCCGCCGAGGCCGATCCTGGACCCACGGCACCCGCAGCAGCGCAGCAGCGCACAAAAACGATGCTGCGCAGCAAATCGGAGGGCTACAGCAAAGGACAGGATTGTGACATGGCTGATTTTGAAGTGTTGAGGTTTGACCAATCGGACGTGAG] [+] EMBL BU804827 [GGGAACGAAGGTGATTCTGACTGTCTGTGGCTGTGACCCTTCAGGTGAAATGGATGGTGTACTGGATAATATTTGCCCTGTTCACCACCGTGGAAGTGTTCACAGACATGTTCCTTTGTTGGCTTCCTTTTTACTATGAGCTGAAGATAGCCTTTGTTGTGTGGCTGCTCTCCCCTTACACGAAAGGCTCCAGCGTGCTGTACAGGAAGTTTGTCCATCCCACACTTTCCTCAAAAGAAAAGGACGTGGATGAATATATCGGGCAAACAAAGGAGAAAATCTGCGACACCCTGGTGCATTATGGGAGAAAAGGACTCAATGTTGCTGCCACAGCCGCAGTCATGGCTGCAACAAAGGGTCAAGGGGTCCTGTCAGACAAACTGAGGAGTTTCAGCATGCAGGATCTGTCTGCGTACCAGTCTGACCCCGCCGAGGCCGATCCTGGACCCACGGCACCCGCAGCAGCGCAGCAGCGCACAAAAACGATGCTGCGCAGCAAATCGGAGGGCTACAGCAAAGGACAGGATTGTGACATGGCTGATTTTGAAGTGTTGAGGTTTGACCAATCGGACGTGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2165#0 CCTCCCCGCAGACAGCGCGTCCTGTCGCCTTCCTCAGCGCAATGGTCTCCTGGATCATCT 60 consensus_2165#1 ------------------------------------------------------------ consensus_2165#0 CTAGGCTGGTGGTACTCGTGTTCGGTACACTTTACCCCGCTTACTCGTCTTATAAAGCTG 120 consensus_2165#1 -------------------------------------------GGGAACGAAGGTGATTC 17 * * * consensus_2165#0 TGAA-GTCAAGAGATCTGAAGGAATACGTGAAATGGATGATGTACTGGATAATATTTGCC 179 consensus_2165#1 TGACTGTCTGTGGCTGTGACCCTTCAGGTGAAATGGATGGTGTACTGGATAATATTTGCC 77 *** *** * * *** * ************ ******************** consensus_2165#0 CTGTTCACCACCGTGGAAGTGTTCACAGACATGTTCCTTTGTTGGCTTCCTTTTTACTAT 239 consensus_2165#1 CTGTTCACCACCGTGGAAGTGTTCACAGACATGTTCCTTTGTTGGCTTCCTTTTTACTAT 137 ************************************************************ consensus_2165#0 GAGCTGAAGATAGCCTTTGTTGTGTGGCTGCTCTCCCCTTACACGAAAGGCTCCAGCGTG 299 consensus_2165#1 GAGCTGAAGATAGCCTTTGTTGTGTGGCTGCTCTCCCCTTACACGAAAGGCTCCAGCGTG 197 ************************************************************ consensus_2165#0 CTGTACAGGAAGTTTGTCCATCCCACACTTTCCTCAAAAGAAAAGGACGTGGATGAATAT 359 consensus_2165#1 CTGTACAGGAAGTTTGTCCATCCCACACTTTCCTCAAAAGAAAAGGACGTGGATGAATAT 257 ************************************************************ consensus_2165#0 ATCGGGCAAACAAAGGAGAAAATCTGCGACACCCTGGTGCATTATGGGAGAAAAGGACTC 419 consensus_2165#1 ATCGGGCAAACAAAGGAGAAAATCTGCGACACCCTGGTGCATTATGGGAGAAAAGGACTC 317 ************************************************************ consensus_2165#0 AATGTTGCTGCCACAGCCGCAGTCATGGCTGCAACAAAGGGTCAAGGGGTCCTGTCAGAC 479 consensus_2165#1 AATGTTGCTGCCACAGCCGCAGTCATGGCTGCAACAAAGGGTCAAGGGGTCCTGTCAGAC 377 ************************************************************ consensus_2165#0 AAACTGAGGAGTTTCAGCATGCAGGATCTGTCTGCGTACCAGTCTGACCCCGCCGAGGCC 539 consensus_2165#1 AAACTGAGGAGTTTCAGCATGCAGGATCTGTCTGCGTACCAGTCTGACCCCGCCGAGGCC 437 ************************************************************ consensus_2165#0 GATCCTGGACCCACGGCACCCGCAGCAGCGCAGCAGCGCACAAAAACGATGCTGCGCAGC 599 consensus_2165#1 GATCCTGGACCCACGGCACCCGCAGCAGCGCAGCAGCGCACAAAAACGATGCTGCGCAGC 497 ************************************************************ consensus_2165#0 AAATCGGAGGGCTACAGCAAAGCCTCCTCTTAGAGT------------------------ 635 consensus_2165#1 AAATCGGAGGGCTACAGCAAAGGACAGGATTGTGACATGGCTGATTTTGAAGTGTTGAGG 557 ********************** ** consensus_2165#0 -------------------- consensus_2165#1 TTTGACCAATCGGACGTGAG 577 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |