These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 617 fasta sequence [AGATACAGCTGGAGGATAGTTTCTCTGAGGCTCGTTTAGTTATATGTTTTTAAAAGTAGCATAGCCGACACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAGGAGACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACAAAGCGGCAGTTTGCTGCTCCTCACGATACGGGCTGGCATTGCTCTCCTGTTATGCCTTCTTTGCGGGCTACAGTGGGAGGGGTAACCTTAGCGGTGCCATGGGGGAAATGCTTAACAACACTCAGAGGGCCAGCACTAACCACAGCGGCTCGTTGGGGACCGCACACAACAGCCCCGAGCGGCCAAAACACAACCAAACAGCCAGCATGTACGACTGGGACTCTGAGACCCAGGGTTGGATCTTGGGTGCCTTCTTCTATGGTTATATCTTGACACAGATCCCTGGAGGCTACCTGGCCAGCCGCTGTGGACCCAAGTGGCTCTTGGGACTTGGAGTCCTGGGAACGGTACTTTTTACACTGCTAACACCCCCTGGCGGGCAATTTAGGTGGAAATTACCCTCTTCGCTGGTCCGGTGGTTGGAAAGAATGGAGAAG] [+] EMBL CA591328 [AGATACAGCTGGAGGATAGTTTCTCTGAGGCTCGTTTAGTTATATGTTTTTAAAAGTAGCATAGTCGACACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAGGAGACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACAAAGCGGCAGTTTGCTGCTCCTCACGATACGGTCTGGCATTGCTCTCCTGTTATGCCTTCTTTGTGGTCTACAGTTTGAGGGTTAACCTTAGCGTTGCCATGGCGGAAATGCTTAACAACACTCAGAAGTCCAGCACTAACCACAGCGGCTCGTTGTGTCCTGCACACAACAGCCCCGAGCGGCCAAAACACAACCAAACAGCCAGCATGTACGACTGGGACTCTGAGACCCAGGGTTGGATCTTGGGTGCCTTCTTCTATGGTTATATCTTGACACAGATCCCTGGAGGCTACCTGGCCAGCCGCTGTGGACCCAAGTGGCTCTTGGGACTTGGAGTCCTGGGAACGGTACTTTTTACACTGCTAACACCCCCTGGCGGGCAATTTAGGTGGAAATTACCCTCTTCGCTGGTCCGGTGGTTGGAAAGAATGGAGAAG] [+] EMBL FR0058817 [ CCGACACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAGGAGACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACAAAGCGGCAGTTTGCTGCTCCTCACGATACGGGCTGGCATTGCTCTCCTGTTATGCCTTCTTTGCGGGCTACAGTGGGAGGGGTAACCTTAGCGGTGCCATGGGGGAAATGCTTAACAACACTCAGAGGGCCAGCACTAACCACAGCGGCTTGTTGGGGACCt ] consensusID : consensus_2200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 338 fasta sequence [CACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAAGAGACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACAAAGGTGATTTATTAAAATTAAGTCGAGTGCAAAAAGATATGCAGAGTGTTGGTAGCTAAAGGGAAATCCTTGCATGGTTCAGTGTGCATGTGATTAGACAAAATGTATTCATGGTTTGAAGACAAGCAAGCTGGTTTAGCTACGTACAAAACTTCATTTCTTGGGGGAGGTTAGGGGAAATAGGGCACGTATGCTTACACACCAACGGAATTATCACCCTTTGCCC] [+] EMBL FR0059132 [CACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAAGAGACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACAAAGGTGATTTATTAAAATTAAGTCGAGTGCAAAAAGATATGCAGAGTGTTGGTAGCTAAAGGGAAATCCTTGCATGGTTCAGTGTGCATGTGATTAGACAAAATGTATTCATGGTTTGAAGACAAGCAAGCTGGTTTAGCTACGTACAAAACTTCATTTCTTGGGGGAGGTTAGTGTAAATAGGGCACGTATGCTTACACACCAACGGAATTATCACCCTTTGCCC] [+] EMBL FR0059109 [ ATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAAGAGACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACAAAGGTGATTTATTAAAATTAAGTCGAGTGCAAAAAGATATGCAGAGTGTTGGTAGCTAAAGGGAAATCCTTGCATGGTTCAGTGTGCATGTGATTAGACAAAATGTATTCATGGTTTGAAGACAAGCAAGCTGGTTTAGCTACGTACAAAACTTCATTTCTTGGGGGAGGTTAGGGGAAATAGTGCACGTATGCTTACACACCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2200#0 AGATACAGCTGGAGGATAGTTTCTCTGAGGCTCGTTTAGTTATATGTTTTTAAAAGTAGC 60 consensus_2200#1 ------------------------------------------------------------ consensus_2200#0 ATAGCCGACACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAGGAG 120 consensus_2200#1 --------CACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAAGAG 52 ************************************************ *** consensus_2200#0 ACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACA 180 consensus_2200#1 ACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACA 112 ************************************************************ consensus_2200#0 AAGCGGCAGTTTGCTGCTCCTCACGATACGGGCTGGCATTGCTCTCCTGT-TATGCCTTC 239 consensus_2200#1 AA--GGTGATTTATTAAAATT---AAGTCGAGTGCAAAAAGATATGCAGAGTGTTGGTAG 167 ** ** *** * * * ** * * * * * * * * * * consensus_2200#0 TTTGCGGGCTACAGTGGGAGGGGTAACCTTAGCGGTGCCATGGGGGAAATGCTTAACAAC 299 consensus_2200#1 CTAAAGGGAAATCCTTGCATGGTTCAGTGTGCATGTGAT-TAGACAAAATG--TATTCAT 224 * *** * * * * ** * * * *** * * ***** ** * consensus_2200#0 ACTCAGAGGGCCAGCACTAACCACAGCGGCTCGTTGGGGACCGCACACAACAGCCCCGAG 359 consensus_2200#1 GGTTTGAAGACAAGCA-----------AGCTGGTTTAGCTACGTACAAAACTTCATTTCT 273 * ** * * **** *** *** * ** *** *** * consensus_2200#0 CGGCCAAAACACAACCAAACAGCCAGCATGTACGACTGGGACTCTGAGACCCAGGGTTGG 419 consensus_2200#1 TGGGGGAGGTTAGGGGAAATAG--GGCACGTATG-CTTACACACCAA----CGGAATTAT 326 ** * *** ** *** *** * ** ** * * * * ** consensus_2200#0 ATCTTGGGTGCCTTCTTCTATGGTTATATCTTGACACAGATCCCTGGAGGCTACCTGGCC 479 consensus_2200#1 CACCCTT-TGCCC----------------------------------------------- 338 * **** consensus_2200#0 AGCCGCTGTGGACCCAAGTGGCTCTTGGGACTTGGAGTCCTGGGAACGGTACTTTTTACA 539 consensus_2200#1 ------------------------------------------------------------ consensus_2200#0 CTGCTAACACCCCCTGGCGGGCAATTTAGGTGGAAATTACCCTCTTCGCTGGTCCGGTGG 599 consensus_2200#1 ------------------------------------------------------------ consensus_2200#0 TTGGAAAGAATGGAGAAG 617 consensus_2200#1 ------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |