Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 2200 cluster # 2200       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2200#0 length = 617 sequences # 2  
consensus_2200#1 length = 338 sequences # 2  

consensusID : consensus_2200#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 617
fasta sequence
                              [AGATACAGCTGGAGGATAGTTTCTCTGAGGCTCGTTTAGTTATATGTTTTTAAAAGTAGCATAGCCGACACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAGGAGACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACAAAGCGGCAGTTTGCTGCTCCTCACGATACGGGCTGGCATTGCTCTCCTGTTATGCCTTCTTTGCGGGCTACAGTGGGAGGGGTAACCTTAGCGGTGCCATGGGGGAAATGCTTAACAACACTCAGAGGGCCAGCACTAACCACAGCGGCTCGTTGGGGACCGCACACAACAGCCCCGAGCGGCCAAAACACAACCAAACAGCCAGCATGTACGACTGGGACTCTGAGACCCAGGGTTGGATCTTGGGTGCCTTCTTCTATGGTTATATCTTGACACAGATCCCTGGAGGCTACCTGGCCAGCCGCTGTGGACCCAAGTGGCTCTTGGGACTTGGAGTCCTGGGAACGGTACTTTTTACACTGCTAACACCCCCTGGCGGGCAATTTAGGTGGAAATTACCCTCTTCGCTGGTCCGGTGGTTGGAAAGAATGGAGAAG]

[+] EMBL CA591328             [AGATACAGCTGGAGGATAGTTTCTCTGAGGCTCGTTTAGTTATATGTTTTTAAAAGTAGCATAGTCGACACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAGGAGACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACAAAGCGGCAGTTTGCTGCTCCTCACGATACGGTCTGGCATTGCTCTCCTGTTATGCCTTCTTTGTGGTCTACAGTTTGAGGGTTAACCTTAGCGTTGCCATGGCGGAAATGCTTAACAACACTCAGAAGTCCAGCACTAACCACAGCGGCTCGTTGTGTCCTGCACACAACAGCCCCGAGCGGCCAAAACACAACCAAACAGCCAGCATGTACGACTGGGACTCTGAGACCCAGGGTTGGATCTTGGGTGCCTTCTTCTATGGTTATATCTTGACACAGATCCCTGGAGGCTACCTGGCCAGCCGCTGTGGACCCAAGTGGCTCTTGGGACTTGGAGTCCTGGGAACGGTACTTTTTACACTGCTAACACCCCCTGGCGGGCAATTTAGGTGGAAATTACCCTCTTCGCTGGTCCGGTGGTTGGAAAGAATGGAGAAG]
[+] EMBL FR0058817            [                                                                CCGACACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAGGAGACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACAAAGCGGCAGTTTGCTGCTCCTCACGATACGGGCTGGCATTGCTCTCCTGTTATGCCTTCTTTGCGGGCTACAGTGGGAGGGGTAACCTTAGCGGTGCCATGGGGGAAATGCTTAACAACACTCAGAGGGCCAGCACTAACCACAGCGGCTTGTTGGGGACCt                                                                                                                                                                                                                                                                                   ]


>consensus_2200#0 AGATACAGCTGGAGGATAGTTTCTCTGAGGCTCGTTTAGTTATATGTTTTTAAAAGTAGC ATAGCCGACACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAGGAG ACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACA AAGCGGCAGTTTGCTGCTCCTCACGATACGGGCTGGCATTGCTCTCCTGTTATGCCTTCT TTGCGGGCTACAGTGGGAGGGGTAACCTTAGCGGTGCCATGGGGGAAATGCTTAACAACA CTCAGAGGGCCAGCACTAACCACAGCGGCTCGTTGGGGACCGCACACAACAGCCCCGAGC GGCCAAAACACAACCAAACAGCCAGCATGTACGACTGGGACTCTGAGACCCAGGGTTGGA TCTTGGGTGCCTTCTTCTATGGTTATATCTTGACACAGATCCCTGGAGGCTACCTGGCCA GCCGCTGTGGACCCAAGTGGCTCTTGGGACTTGGAGTCCTGGGAACGGTACTTTTTACAC TGCTAACACCCCCTGGCGGGCAATTTAGGTGGAAATTACCCTCTTCGCTGGTCCGGTGGT TGGAAAGAATGGAGAAG



consensusID : consensus_2200#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 338
fasta sequence
                              [CACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAAGAGACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACAAAGGTGATTTATTAAAATTAAGTCGAGTGCAAAAAGATATGCAGAGTGTTGGTAGCTAAAGGGAAATCCTTGCATGGTTCAGTGTGCATGTGATTAGACAAAATGTATTCATGGTTTGAAGACAAGCAAGCTGGTTTAGCTACGTACAAAACTTCATTTCTTGGGGGAGGTTAGGGGAAATAGGGCACGTATGCTTACACACCAACGGAATTATCACCCTTTGCCC]

[+] EMBL FR0059132            [CACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAAGAGACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACAAAGGTGATTTATTAAAATTAAGTCGAGTGCAAAAAGATATGCAGAGTGTTGGTAGCTAAAGGGAAATCCTTGCATGGTTCAGTGTGCATGTGATTAGACAAAATGTATTCATGGTTTGAAGACAAGCAAGCTGGTTTAGCTACGTACAAAACTTCATTTCTTGGGGGAGGTTAGTGTAAATAGGGCACGTATGCTTACACACCAACGGAATTATCACCCTTTGCCC]
[+] EMBL FR0059109            [   ATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAAGAGACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACAAAGGTGATTTATTAAAATTAAGTCGAGTGCAAAAAGATATGCAGAGTGTTGGTAGCTAAAGGGAAATCCTTGCATGGTTCAGTGTGCATGTGATTAGACAAAATGTATTCATGGTTTGAAGACAAGCAAGCTGGTTTAGCTACGTACAAAACTTCATTTCTTGGGGGAGGTTAGGGGAAATAGTGCACGTATGCTTACACACCA                      ]


>consensus_2200#1 CACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAAGAGACGAACAG GACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACAAAGGTGAT TTATTAAAATTAAGTCGAGTGCAAAAAGATATGCAGAGTGTTGGTAGCTAAAGGGAAATC CTTGCATGGTTCAGTGTGCATGTGATTAGACAAAATGTATTCATGGTTTGAAGACAAGCA AGCTGGTTTAGCTACGTACAAAACTTCATTTCTTGGGGGAGGTTAGGGGAAATAGGGCAC GTATGCTTACACACCAACGGAATTATCACCCTTTGCCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2200#0      AGATACAGCTGGAGGATAGTTTCTCTGAGGCTCGTTTAGTTATATGTTTTTAAAAGTAGC 60
consensus_2200#1      ------------------------------------------------------------
                                                                                  

consensus_2200#0      ATAGCCGACACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAGGAG 120
consensus_2200#1      --------CACATTAAACGGTCTTAGTAAATGGAGCCTTACGAGTCGGACATGGAAAGAG 52
                              ************************************************ ***

consensus_2200#0      ACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACA 180
consensus_2200#1      ACGAACAGGACACTCCGCTGCTTCCAGAGGCACACCGAGAAAAACATCAGACAGTCCACA 112
                      ************************************************************

consensus_2200#0      AAGCGGCAGTTTGCTGCTCCTCACGATACGGGCTGGCATTGCTCTCCTGT-TATGCCTTC 239
consensus_2200#1      AA--GGTGATTTATTAAAATT---AAGTCGAGTGCAAAAAGATATGCAGAGTGTTGGTAG 167
                      **  **   ***  *     *    *  ** *     *  * * * * *  * *   *  

consensus_2200#0      TTTGCGGGCTACAGTGGGAGGGGTAACCTTAGCGGTGCCATGGGGGAAATGCTTAACAAC 299
consensus_2200#1      CTAAAGGGAAATCCTTGCATGGTTCAGTGTGCATGTGAT-TAGACAAAATG--TATTCAT 224
                       *   ***  *   * * * ** * *   *    ***   * *   *****  **   * 

consensus_2200#0      ACTCAGAGGGCCAGCACTAACCACAGCGGCTCGTTGGGGACCGCACACAACAGCCCCGAG 359
consensus_2200#1      GGTTTGAAGACAAGCA-----------AGCTGGTTTAGCTACGTACAAAACTTCATTTCT 273
                        *  ** * * ****            *** ***  *   ** *** ***  *      

consensus_2200#0      CGGCCAAAACACAACCAAACAGCCAGCATGTACGACTGGGACTCTGAGACCCAGGGTTGG 419
consensus_2200#1      TGGGGGAGGTTAGGGGAAATAG--GGCACGTATG-CTTACACACCAA----CGGAATTAT 326
                       **   *         *** **   *** *** * **   ** *  *    * *  **  

consensus_2200#0      ATCTTGGGTGCCTTCTTCTATGGTTATATCTTGACACAGATCCCTGGAGGCTACCTGGCC 479
consensus_2200#1      CACCCTT-TGCCC----------------------------------------------- 338
                        *     ****                                                

consensus_2200#0      AGCCGCTGTGGACCCAAGTGGCTCTTGGGACTTGGAGTCCTGGGAACGGTACTTTTTACA 539
consensus_2200#1      ------------------------------------------------------------
                                                                                  

consensus_2200#0      CTGCTAACACCCCCTGGCGGGCAATTTAGGTGGAAATTACCCTCTTCGCTGGTCCGGTGG 599
consensus_2200#1      ------------------------------------------------------------
                                                                                  

consensus_2200#0      TTGGAAAGAATGGAGAAG 617
consensus_2200#1      ------------------
                                        




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)