These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 601 fasta sequence [AATGGCGGACTTCGACTACTACGACGATCGAGATCGGGCCTATGGAAGCTTCGGCGGCAGCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCCGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGGACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGAAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCGAAGATCTGGAGTCTCTAAAAGAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAGAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATGATGCAAAAGGAAAAGGAGGTAGTCGAGGAT-CTGCCGCAGGAGGAGGAGGACGTGACAACCGTGAGGACTTCGACCAGCCAGGAGGAGGTTATAGAGATGATGATTATATGGGGGGGCGGAGTCGAGGTGGCGGCACAGGTGCTGGTCGTCCCAGTGACAGGAGGGGTGCAGGTCCAGGTCGT] [+] EMBL CA591183 [AATGGCGGACTTCGACTACTACGACGATCGAGATCGGGCCTATGGAAGCTTCGGCGGCAGCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCCGTCAGAGCCGCCATTCACTGCTTATGTAAGAAACCTGCCTTTTAAAACGGTGTAGGGGGACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGAAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCGAAGATCTGGAGTCTCTAAAAGAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAGAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATGATGCAAAAGGAAAAGGAGGTAGTCGAGGAT CTGCCGCAGGAGGAGGAGGACGTGACAACCGTGAGGACTTCGACCAGCCAGGAGGAGGTTATAGAGATGATGATTATATGGGAGGGCGGAGTCGAGGTGGCGGCACAGGTGCTGGTCGTCCCAGTGACAGGAGGGGTGCAGGTCCAGGTCGT] [+] EMBL BU805062 [ TGGCGGACTTCGACTACTACGACGATCGAGATCGGGCCTATGGACGCTTCGGCGGCAGCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCCGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGGACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGAAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCGAAGATCTGGAGTCTCTAAAAGAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAGAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATGATGCAAAAGGAAAAGGAGGTAGTCGAGGATCCTGCCGCAGGAGGAGGAGGACGTGACA ] [+] EMBL CA590164 [ CAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCCGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGGACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGAAACAGACTGGTTCAAAGGTTTTTGTTATGTTGAATTCGAAGATCTGGAGTCTCTAAAAGAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAGAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATGATGCAAAAGGAAAAGGAGGTAGTCGAGGAT CTGCCGCAGGAGGAGGAGGACGTGACAACCGTGAGGACTTCGACCAGCCAGGAGGAGGTTATAGAGATGATGATTATATGGGG ] consensusID : consensus_2204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [TAATGGCGGACTTCGACTACTACGACGATCGAGATGTGCCTATGGAAGCTTCGGCGGCAGCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCCGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGGACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGAAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCTTATTATCTGGAGTCTCTAAAAGAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAGAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATGATGCAAAAGGTTATAGAGATGATGATTATATGGGAGGGCGGAGTCGAGGTGGCGGCACAGGTGCTGG] [+] EMBL BU805685 [TAATGGCGGACTTCGACTACTACGACGATCGAGATGTGCCTATGGAAGCTTCGGCGGCAGCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCCGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGGACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGAAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCTTATTATCTGGAGTCTCTAAAAGAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAGAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATGATGCAAAAGGTTATAGAGATGATGATTATATGGGAGGGCGGAGTCGAGGTGGCGGCACAGGTGCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2204#0 -AATGGCGGACTTCGACTACTACGACGATCGAGATCGGGCCTATGGAAGCTTCGGCGGCA 59 consensus_2204#1 TAATGGCGGACTTCGACTACTACGACGATCGAGAT-GTGCCTATGGAAGCTTCGGCGGCA 59 ********************************** * ********************** consensus_2204#0 GCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGC 119 consensus_2204#1 GCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGC 119 ************************************************************ consensus_2204#0 CGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGG 179 consensus_2204#1 CGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGG 179 ************************************************************ consensus_2204#0 ACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAG 239 consensus_2204#1 ACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAG 239 ************************************************************ consensus_2204#0 AAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCGAAG-ATCTGGAGTCTCTAAAA 298 consensus_2204#1 AAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCTTATTATCTGGAGTCTCTAAAA 299 ************************************** * ***************** consensus_2204#0 GAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCA 358 consensus_2204#1 GAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCA 359 ************************************************************ consensus_2204#0 GAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGAT 418 consensus_2204#1 GAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGAT 419 ************************************************************ consensus_2204#0 GATGCAAAAGGAAAAGGAGGTAGTCGAGGATCTGCCGCAGGAGGAGGAGGACGTGACAAC 478 consensus_2204#1 GATGCAAAAGGTTATAGAGATGAT-GATTATATG-----GGAGGGCGGAGTCGAGGTGGC 473 *********** * *** * * ** ** ** ***** * * ** * * consensus_2204#0 CGTGAGGACTTCGACCAGCCAGGAGGAGGTTATAGAGATGATGATTATATGGGGGGGCGG 538 consensus_2204#1 GGCACAGGTGCTGG---------------------------------------------- 487 * * * consensus_2204#0 AGTCGAGGTGGCGGCACAGGTGCTGGTCGTCCCAGTGACAGGAGGGGTGCAGGTCCAGGT 598 consensus_2204#1 ------------------------------------------------------------ consensus_2204#0 CGT 601 consensus_2204#1 --- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |