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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2216#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 788 fasta sequence
[CAATTCCTGGCTGCTTCGCGGCCTCCGCCTGCCGAGAATTAATATCTGTCAAATGGGATCGATTGCTTTTATCGACGAAAAAGCTGACTGTGACGTGTTGACGCTGCTGATCTCAGGATGGGCCTGTCCTCCTTATTTGATGACCCTCAGCTCTCCTCCTCCTCAGAAACCCCCCTTTCCTCTCAGACTCTCCCTCCAATCACGGAATTTCTGGCTGAGCTGCAGAAGAAACTGCTTAATATGTTGTCATACTCTGAAACGCTCCATCTGATTGGTCATGTGGCGAATCTTTTCCAAACCGCTGATCCTGATTGGTTGTTCAGTCCAAGTAGTGGGTTAGCAGAACTTCAGGTCGAGTACAACGCTGTGGTAAAGGCTCTGGTAAGAGTTGCTGCTCTACCGCTCTGTGAGGATGACTATGGCTCGTTACCTGCTGCCACCTATCAGAGTATTCCATATCAAGCTGTCACAGTATGCTCCGCTCTCACAGCACTACTGGAAACTCTGGGAAACAGGGGTGTTCAGACTGGCATTCCACTGACCATAGCTCCCTCTGTGTTAGTGTTTGCTGTCACACACTTTCAGGATCAGCCTTGGACCAACTCTGTCTCCAGAGCTGCAGCCAGAAACCTGCAGGAGGTGCTCCTCAGGGCAGGGGGCTGGAGAGATTCTGGCCACCTCCTGACAGGGGAAAACAATGGAGTTCTAGGAAAAATCCTGGACATCCTGCAACCTCAAATGACCCAAACCATGTGGCAGCGGTGTGAAGCAGTGAAGTTTGTTTATGT]
[+] EMBL CA846059 [CAATTCCTGGCTGCTTCGCGGCCTCCGCCTGCCGAGAATTAATATCTGTCAAATGGGATCGATTGCTTTTATCGACGAAAAAGCTGACTGTGACGTGTTGACGCTGCTGATCTCAGGATGGGCCTGTCCTCCTTATTTGATGACCTTCAGCTCTCCTCCTCCTCAGAAACCCCCCTTTCCTCTCAGACTCTCCCTCCAATCACGGAATTTCTGGCTGAGCTGCAGAAGAAACTGCTTAATATGTTGTCATACTCTGAAACGCTCCATCTGATTGGTCATGTGGCGAATCTTTTCCAAACCGCTGATCCTGATTGGTTGTTCAGTCCAAGTAGTGGGTTAGCAGAACTTCAGGTCGAGTACAACGCTGTGGTAAAGGCTCTGGTAAGAGTTGCTGCTCTACCGCTCTGTGAGGATGACTATGGCTCGTTACCTGCTGCCACCTATCAGAGTATTCCATATCAAGCTGTCACAGTATGCTCCGCTCTCACAGCACTACTGGAAACTCTGGGAAACAGGGGTGTTCAGACTGGCATTCCACTGACCATAGCTCCCTCTGTGTTAGTGTTTGCTGTCACACACTTTCAGGATCAGCCTTGGACCAACTCTGTCTCCAGAGCTGCAGCCAGAAACCTGCAGGAGGTGCTCCTCAGGGCAGGGGGCTGGAGAGATTCTGGCCACCTCCTGACAGGGGAAAACAATGGAGTTCTAGGAAAAATCCTGGACATCCTGCAACCTCAAATGACCCAAACCATGTGGCAGCGGTGTGAAGCAGTGAAGTTTGTTTATGT]
[+] EMBL BU807880 [ TGCTTCGCGGCCTCCGCCTGCCGAGAATTAATATCTGTCAAATGGGATCGATTGCTTTTATCGACGAAAAAGCTGACTGTGACGTGTTGACGCTGCTGATCTCAGGATGGGCCTGTCCTCCTTATTTGATGACCCTCAGCTCTCCTCCTCCTCAGAAACCCCCCTTTCCTCTCAGACTCTCCCTCCAATCACGGAATTTCTGGCTGAGCTGCAGAAGAAACTGCTTAATATGTTGTCATACTCTGAAACGCTCCATCTGATTGGTCATGTGGCGAATCTTTTCCAAACCGCTGATCCTGATTGGTTGTTCAGTCCAAGTAGTGGGTTAGCAGAACTTCAGGTCGAGTACAACGCTGTGGTAAAGGCTCTGGTAAGAGTTGCTGCTCTACCGCTCTGTGAGGATGACTATGGCTCGTTACCTGCTGCCACCTATCAGAGTATTCCATATCAAGCTGTCACAGTATGCTCCGCTCTCACAGCACTACTGGAAACTCTGGGAAACAGGGGTGTTCAGACTGGCATTCCACTGA ]
consensusID : consensus_2216#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence
[TTGAAATGTAGGAGATGAGCTACCTTATCTTATTATTTCCTTATTGTGCTAATTTCACTGTCGCACTGACTGGCCTAACGTTTCCGGTTGTCTTGGACAGTCCATGCCCGCCCCCTCCGCGGAGAGTTGATGAGATCTATATATAAACTTCAAAGAGCCGAAACCATGTAAAAAACCAATGGACAAAAGGAAATGATGCATCCCTAAAGAGCAATATCATGATATATGAAACTCTCATTGTCTTGTCATGGAGCTCTTTGAAGACACTTGTGCTGCTGTGATTCTCTTGGACTAACATTTGTTTTATGAAAAGACAAATCTTAAAATGACCTGAATAAGTTATTAAAAAACTATTGTCTTCATGTTAACATCTGACAGCTAACATGTTCTTCCTCCTCTTCTCCTCTATACCTCCTTCTCAGGATGGGCCTGTCCTCCTTATTTGATGACCTTCAGCTCTCCTCCTCCTCAGAAACCCCCCTTTCCTCTCAGACTCTCCCTCCAATCACGGAATT]
[+] EMBL CA588354 [TTGAAATGTAGGAGATGAGCTACCTTATCTTATTATTTCCTTATTGTGCTAATTTCACTGTCGCACTGACTGGCCTAACGTTTCCGGTTGTCTTGGACAGTCCATGCCCGCCCCCTCCGCGGAGAGTTGATGAGATCTATATATAAACTTCAAAGAGCCGAAACCATGTAAAAAACCAATGGACAAAAGGAAATGATGCATCCCTAAAGAGCAATATCATGATATATGAAACTCTCATTGTCTTGTCATGGAGCTCTTTGAAGACACTTGTGCTGCTGTGATTCTCTTGGACTAACATTTGTTTTATGAAAAGACAAATCTTAAAATGACCTGAATAAGTTATTAAAAAACTATTGTCTTCATGTTAACATCTGACAGCTAACATGTTCTTCCTCCTCTTCTCCTCTATACCTCCTTCTCAGGATGGGCCTGTCCTCCTTATTTGATGACCTTCAGCTCTCCTCCTCCTCAGAAACCCCCCTTTCCTCTCAGACTCTCCCTCCAATCACGGAATT]
consensusID : consensus_2216#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence
[TGCTTTTATCGACGAAAAAGCTGACTGTGACGTGTTGACGCTGCTGATCTCAGCTCTCCTCCTCCTCAGAAACCCCCCTTTCCTCTCAGACTCTCCCTCCAATCACGGAATTTCTGGCTGAGCTGCAGAAGAAACTGCTTAATATGTTGTCATACTCTGAAACGCTCCATCTGATTGGTCATGTGGCGAATCTTTTCCAAACCGCTGATCCTGATTGGGTGTTCAGTCCAAGTAGTGGGTTAGCAGAACTTCAGGTCGAGTACAACGCTGTGGTAAAGGCTCTGGTAAGAGTTGCTGCTCTACCGCTCTGTGAGGATGACTATGGCTCGGTACCTGCTGCCACCTATCAGAGGATTCCATATCAA]
[+] EMBL FR0061666 [TGCTTTTATCGACGAAAAAGCTGACTGTGACGTGTTGACGCTGCTGATCTCAGCTCTCCTCCTCCTCAGAAACCCCCCTTTCCTCTCAGACTCTCCCTCCAATCACGGAATTTCTGGCTGAGCTGCAGAAGAAACTGCTTAATATGTTGTCATACTCTGAAACGCTCCATCTGATTGGTCATGTGGCGAATCTTTTCCAAACCGCTGATCCTGATTGGGTGTTCAGTCCAAGTAGTGGGTTAGCAGAACTTCAGGTCGAGTACAACGCTGTGGTAAAGGCTCTGGTAAGAGTTGCTGCTCTACCGCTCTGTGAGGATGACTATGGCTCGGTACCTGCTGCCACCTATCAGAGGATTCCATATCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2216#0 CAATTCCTGGCTGCTTCGCGGCCTCCGCCTGCCGAGAATTAATATCTGTCAAATGGGATC 60
consensus_2216#2 ------------------------------------------------------------
consensus_2216#1 -------------------------------TTGAAATGTAGGAGATGAGCTACCTTATC 29
consensus_2216#0 GATTGCTTTTATCGACGAAA-AAGCTGACTGTGACGTGTTGACGCTGCTGATCTCAGGAT 119
consensus_2216#2 ---TGCTTTTATCGACGAAA-AAGCTGACTGTGACGTGTTGACGCTGCTGATCT------ 50
consensus_2216#1 TTATTATTTCCTTATTGTGCTAATTTCACTGT--CGCACTGACTGGCCTAACGTT----- 82
* *** * * ** * ***** ** **** ** * *
consensus_2216#0 GGGCCTGTCCTCCTTATTTGATGACCCTCAGCTCTCCTCCTCCTCAGAAACCCCCC---- 175
consensus_2216#2 ----------------------------CAGCTCTCCTCCTCCTCAGAAACCCCCC---- 78
consensus_2216#1 -------TCCGGTTGTCTTGGACAGTCCATGCCCGCCCCCTCCGCGGAGAGTTGATGAGA 135
** * ** ***** * ** *
consensus_2216#0 TTTCCTCTCAGACTCTCC----CTCCAATCACGGAATTTCTGGCTGAGCTGCAGAAGAAA 231
consensus_2216#2 TTTCCTCTCAGACTCTCC----CTCCAATCACGGAATTTCTGGCTGAGCTGCAGAAGAAA 134
consensus_2216#1 TCTATATATAAACTTCAAAGAGCCGAAACCATGTAAAAAACCAATGGACAAAAGGAAATG 195
* * * *** * ** ** * ** ** * ** * *
consensus_2216#0 CTGC-TTAATATGTTGTCATACTCTGAAACGCTCCATCTGATTGGTCATGTGGCGAATCT 290
consensus_2216#2 CTGC-TTAATATGTTGTCATACTCTGAAACGCTCCATCTGATTGGTCATGTGGCGAATCT 193
consensus_2216#1 ATGCATCCCTAAAGAGCAATATCATGATATATGAAACTCTCATTGTCTTGTCATGGAGCT 255
*** * ** * *** *** * * * *** *** * * **
consensus_2216#0 TTTCCAAACCGCTGATCCTGAT-TGGTTGTTCAGTCCAAGTAGTGGGTTAGCAGAACTTC 349
consensus_2216#2 TTTCCAAACCGCTGATCCTGAT-TGGGTGTTCAGTCCAAGTAGTGGGTTAGCAGAACTTC 252
consensus_2216#1 CTTTGAAGACACTTGTGCTGCTGTGATTCTCTTGGACTAACATTTGTTTTATGAAAAGAC 315
** ** * ** * *** * ** * * * * * * * * ** ** *
consensus_2216#0 AGGTCGAGTACAACGCTGTGGTAAAGGCTCTGGTAAGA-GTTGCTGCTCTACCGCTCTGT 408
consensus_2216#2 AGGTCGAGTACAACGCTGTGGTAAAGGCTCTGGTAAGA-GTTGCTGCTCTACCGCTCTGT 311
consensus_2216#1 AAATC--TTAAAATGACCTGAATAAGTTATTAAAAAACTATTGTCTTCATGTTAACATCT 373
* ** ** ** * ** *** * ** *** * * *
consensus_2216#0 GAGGATGACTATGGCTCGTTACCTGCTGCCACCTATCAGAGTATTCCATATCAAGCTGTC 468
consensus_2216#2 GAGGATGACTATGGCTCGGTACCTGCTGCCACCTATCAGAGGATTCCATATCAA------ 365
consensus_2216#1 GACAGCTAACATGTTCTTCCTCCTCTTCTCCTCTATACCTCCTTCTCAGGATGGGCCTGT 433
** * *** *** * * **** * **
consensus_2216#0 ACAGTATGCTCCGCTCTCACAGCACTACTGGAAACTCTGGGAAACAGGGGTGTTC--AGA 526
consensus_2216#2 ------------------------------------------------------------
consensus_2216#1 CCTCCTTATTTGATGACCTTCAGCTCTCCTCCTCCTCAGAAACCCCCCTTTCCTCTCAGA 493
consensus_2216#0 CTGGCATTCCACTGACCATAGCTCCCTCTGTGTTAGTGTTTGCTGTCACACACTTTCAGG 586
consensus_2216#2 ------------------------------------------------------------
consensus_2216#1 CTCTCCCTCCAATCACGGAATT-------------------------------------- 515
consensus_2216#0 ATCAGCCTTGGACCAACTCTGTCTCCAGAGCTGCAGCCAGAAACCTGCAGGAGGTGCTCC 646
consensus_2216#2 ------------------------------------------------------------
consensus_2216#1 ------------------------------------------------------------
consensus_2216#0 TCAGGGCAGGGGGCTGGAGAGATTCTGGCCACCTCCTGACAGGGGAAAACAATGGAGTTC 706
consensus_2216#2 ------------------------------------------------------------
consensus_2216#1 ------------------------------------------------------------
consensus_2216#0 TAGGAAAAATCCTGGACATCCTGCAACCTCAAATGACCCAAACCATGTGGCAGCGGTGTG 766
consensus_2216#2 ------------------------------------------------------------
consensus_2216#1 ------------------------------------------------------------
consensus_2216#0 AAGCAGTGAAGTTTGTTTATGT 788
consensus_2216#2 ----------------------
consensus_2216#1 ----------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |