These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 739 fasta sequence [TGTGTGAGTGTGTGTCAGCGCTCTCTTCTGCCAAAATTGACGGCTGACTGACACTCAGGAGAAGAAGCTGAAATTAAAGGAAATTATTCATCTCACCTGGACGAGAGAGATGACCAAGGAGACTGAGTAAGTTTGAGGAATTCTAATTTATTTTGCCTTGAAAATCTGATCCTTTCTCATCAAATGGTGCTTATAACCACATGAGAACTTAGACTTTTATATTGCTTTGTCTGACATCCATATTTTGGTCCCATTTAATAGTCTTTATAGTCTAGTCTCTTGGAGAGAAACTCCCATCCTTCTTAGCTGCAATGAGACCCCCATGTGAAAAAT-CCAGGTTTTTAAGAAAGGGGTGTTTTGCAGAGGAAACTGATACGGATAGCTGAAACACACACATACACTCGGTCAGGTGACGGCGGTGGTTGCGGGTCTGTTTCGGCGGGTGTTATCACTAACCTAGAGGCCACACAGCACAAAAGGGGACTTGGGAAATAAGAATCTGCTCATGAGGAGACAATCAGGGGGCAATGACAGCATGTATTGCGTTGAATTACATAATGGTGAAATTCTATACATGCAGCCAGGTGGTTTTAGGGGGAGATGGGGATTTGTTGGTGGGACGGAGTGGTGCTGACTTCCTGTAGCTGATGTAATGTTAAGGTAGAGACAGGTGTATTTGAAAGTAAGTCTATGAAGGTTACTTGGCTCATGTCCCAAATGTGGTGATTCTAGTTTCCCC] [+] EMBL BU808630 [TGTGTGAGTGTGTGTCAGCGCTCTCTTCTGCCAAAATTGACGGCTGACTGACACTCAGGAGAAGAAGCTGAAATTAAAGGAAATTATTCATCTCACCTGGACGAGAGAGATGACCAAGGAGACTGAGTAAGTTTGAGGAATTCTAATTTATTTTGCCTTGAAAATCTGATCCTTTCTCATCAAATGGTGCTTATAACCACATGAGAACTTAGACTTTTATATTGCTTTGTCTGACATCCATATTTTGGTCCCATTTAATAGTCTTTATAGTCTAGTCTCTTGGAGAGAAACTCCCATCCTTCTTAGCTGCAATGAGACCCCCATGTGAAAAAT CCAGGTTTTTAAGAAAGGGGTGTTTTGCAGAGGAAACTGATACGGATAGCTGAAACACACACATACACTCGGTCAGGTGACGGCGGTGGTTGCGGGTCTGTTTCGGCGGGTGTTATCACTAACCTAGAGGCCACACAGCACAAAAGGGGACTTGGGAAATAAGAATCTGCTCATGAGGAGACAATCAGGGGGCAATGACAGCATGTATTGCGTTGAATTACATAATGGTGAAATTCTATACATGCAGCC ] [+] EMBL FR0061360 [ CAAAATTGACGGCTGACTGACACTCAGGAGAAGAAGCTGAAATTAAAGGAAATTATTCATCTCACCTGGACGAGAGAGATGACCAAGGAGACTGAGTAAGTTTGAGGAATTCTAATTTATTTTGCCTTGAAAATCTGATCCTTTCTCATCAAATGGTGCTTATAACCACATGAGAACTTAGACTTTTATATTGCTTTGTCTGACATCCATATTTTGGTCCCATTTAATAGTCTTTATAGTCTAGTCTCTTGGAGAGAAACTCCCATCCTTCTTAGCTGCAATGAGACCCCCATGTGAAAAAT CCAGGTTTTTAAGAAAGGGGTGTTTTGCAGAGGAAACTGATACGGATAGCTGAAACACACACATA ] [+] EMBL CA588570 [ ccgtcaTGGCATCCTTCTTAGCTGCAATGAGACCCCCATGTGACATATAAGAGGTTTTTAAGAAAGGGGTGTTTTGCAGAGGAAACTGATACGGATAGCTGAAACACACACATACACTCGGTCAGGTGACGGCGGTGGTTGCGGGTCTGTTTCGGCGGGTGTTATCACTAACCTAGAGGCCACACAGCACAAAAGGGGACTTGGGAAATAAGAATCTGCTCATGAGGAGACAATCAGGGGGCAATGACAGCATGTATTGCATTGAATTACATAATGGTGAAATTCTATACATGCAGCCAGGTGGTTTTAGGGGGAGATGGGGATTTGTTGGTGGGACGGAGTGGTGCTGACTTCCTGTAGCTGATGTAATGTTAAGGTAGAGACAGGTGTATTTGAAAGTAAGTCTATGAAGGTTACTTGGCTCATGTCCCAAATGTGGTGATTCTAGTTTCCCC] consensusID : consensus_2307#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 382 fasta sequence [GAGAAGAAGCTGAAATTAAAGGGGGTTATTGATCTCACCTGGACGAGAGAGATGACCAAGGAGACTGAGACTCTGGGACTGGNTTTTCAGAGCGAGAACTTCAACTTTCACCGTTATAGTAACCTCATCATGGACCCCTGGTCCTACATAGACAGCCCTGGTCCAGAGGAGAACCACTCCAAACCCAGACTTCGGCCAGGAGACGACCTGGCAGCCTTAACCATGCTCTATGAACAGGGCAAGAGCCAGAAAGACCAGAAGCTTGTTGGCATGCACCGCATAGGCAACATCTGCAAAACAGAAAAGACTTCCACCAGCACCAATGACTTTGCGCATTTGGAGACGTCCCCCGGCGTCATGAAGATCCTCTCTGAAAACATTC] [+] EMBL FR0061706 [GAGAAGAAGCTGAAATTAAAGGAAATTATTGATCTCACCTGGACGAGAGAGATGACCAAGGAGACTGAGACTCTGGGACTGGNTTTTCAGAGCGAGAACTTCAACTTTCACCGTTATAGTAACCTCATCATGGACCCCTGGTCCTACATAGACAGCCCTGTTCCAGAGCAGAACCACTCCAAACCCAGACTTCAGCCAGGAGACGACCTGGCAGCCTTAACCATGCTCTATGAACAGTGCAAGAGCCAGAAAGACCAGAAGCTTGTTGGCATGCACCGCATAGGCAACATCTGCAAAACAGAAAAGACTTCCACCAGCACCAATGACTTTGCGCATTTGGAGACGTCCCCCGGCGTCATGAAGATCCTCTCTGAAAACATTC] [+] EMBL FR0061150 [ AAGCTGAAATTAAAGGGGGTTATTCATCTCACCTGGACGAGAGAGATGACCAAGGAGACTGAGACTCTGGGACTGGTTTTTCAGAGCGAGAACTTCAACTTTCACCGTTATAGTAACCTCATCATGGACCCCTGGTCCTACATAGACAGCCCTGGTCCAGAGGAGAACCACTCCAAACCCAGACTTCGGCCAGGAGACGACCTGGCTGCCTTAACCATGCTCTATGAACAGGGCAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2307#0 TGTGTGAGTGTGTGTCAGCGCTCTCTTCTGCCAAAATTGACGGCTGACTGACACTCAGGA 60 consensus_2307#1 ----------------------------------------------------------GA 2 ** consensus_2307#0 GAAGAAGCTGAAATTAAAGGAAATTATTCATCTCACCTGGACGAGAGAGATGACCAAGGA 120 consensus_2307#1 GAAGAAGCTGAAATTAAAGGGGGTTATTGATCTCACCTGGACGAGAGAGATGACCAAGGA 62 ******************** ***** ******************************* consensus_2307#0 GACTGAGTAAGTTTGAGGAATTCTAATTTATTTTGCCTTGAAAATCTGATCCTTTCTCAT 180 consensus_2307#1 GACTGAG--ACTCTGGGA----CTGGNTT--TTCAGAGCGAGAACTTCAACTTTCACCGT 114 ******* * * ** * ** ** ** ** ** * * * ** * * consensus_2307#0 CAAATGGTGCTTATAACCACATGAGAACTTAGACTTTTATATTGCTTTGTCTGACATCCA 240 consensus_2307#1 TATAGTAACCTCAT-----CATGGACCCCTGG--TCCTACATAGACAGCCCTG--GTCCA 165 * * ** ** **** * * * * ** ** * *** **** consensus_2307#0 TATTTTGGTCCCATTTAAT--AGTCTTTATAGTCTAGTCTCTTGGAGAGAAACTCCCATC 298 consensus_2307#1 GAGGAGAACCACTCCAAACCCAGACTTCGGCCAGGAGACGACCTGGCAGCCTTAACCATG 225 * * * ** ** *** ** * * ** **** consensus_2307#0 CTTCTTAGCTGCAATGAGACCCCCATGTGAAAAATCCAGGTTTTTAAGAAAGGGGTGTTT 358 consensus_2307#1 CTCTATGAACAGGGCAAGAGCC------AGAAAGACCAGAAGCTTGTT---GGCATGCAC 276 ** * *** ** *** **** ** ** ** consensus_2307#0 TGCAGAGGAAACTGATACGGATAGCTGAAACACACACATACACTCGGTCAGGTGACGGCG 418 consensus_2307#1 CGCATAGGCAAC--ATCTGCAAAACAGAAA---AGACTTCCACCAGCACCAATGACTTTG 331 *** *** *** ** * * * * **** * ** * *** * * **** * consensus_2307#0 -GTGGTTGCGGGTCTGTTTCGGCGGGTGTTATCACTAACCTAGAGGCCACACAGCACAAA 477 consensus_2307#1 CGCATTTGGAGACGTCCCCCGGCGT-CATGAAGATCCTCTCTGAAAACATTC-------- 382 * *** * * ***** * * * * ** ** * consensus_2307#0 AGGGGACTTGGGAAATAAGAATCTGCTCATGAGGAGACAATCAGGGGGCAATGACAGCAT 537 consensus_2307#1 ------------------------------------------------------------ consensus_2307#0 GTATTGCGTTGAATTACATAATGGTGAAATTCTATACATGCAGCCAGGTGGTTTTAGGGG 597 consensus_2307#1 ------------------------------------------------------------ consensus_2307#0 GAGATGGGGATTTGTTGGTGGGACGGAGTGGTGCTGACTTCCTGTAGCTGATGTAATGTT 657 consensus_2307#1 ------------------------------------------------------------ consensus_2307#0 AAGGTAGAGACAGGTGTATTTGAAAGTAAGTCTATGAAGGTTACTTGGCTCATGTCCCAA 717 consensus_2307#1 ------------------------------------------------------------ consensus_2307#0 ATGTGGTGATTCTAGTTTCCCC 739 consensus_2307#1 ---------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |