These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 623 fasta sequence [AAATGTCTCTGTCTAAAGGAGCAAAGAAAAAGAAGAACCCCGGGCTGAAGCTAGCCAAAGATGTTTTCACACAGCCGGCACCACCAGCAGCGCCTCCCCGAGATCTCGACTCCAAAGCTTGCGTCACCATCGGAGATCAGAACTTTGAGGTGAAGGCCGACGACTTGGAGCCGATTGAAGAGCTGGGGCGGGGAGCGTACGGCGTGGTGGAGAAGATGAGACACGTGCCCAGCGGCGTCATCATGGCCGTCAAGAGGATTCGTGCTACGGTCAACACTCTGGAACAGAAGAGGCTCCTGATGGACCTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACCGGCACCTTCTACGGCGCTCTCTTCAGAGAGGGGGACGTTTGGATCTGTATGGAGCTGATGGACACGTCTCTGGACAAATTCTACAAGAAGGGTATCGAGAAAGGCAAAACCATCCCAGAGGACATCTTGGGAAAGATAACAGTAGCGATTGTAAAGGCGTTAGAACATCTCCACAGTAACCTGTCAGTCATACACAGAGATGTGAAACCCTCCAATGTTCTGATCAACACCTTGGGCCAGGTGAAAATGTGCGATTTCGGCATCAGCGGCCACCTGGTG] [+] EMBL CA591320 [AAATGTCTCTGTCTAAAGGAGCAAAGAAAAAGAAGAACCCCGGGCTGAAGCTAGCCAAAGATGTTTTCACACAGCCGGCACCACCAGCAGCGCCTCCCCGAGATCTCGACTCCAAAGCTTGCGTCACCATCGGAGATCAGAACTTTGAGGTGAAGGCCGACGACTTGGAGCCGATTGAAGAGCTGGGGCGGGGAGCGTACGGCGTGGTGGAGAAGATGAGACACGTGCCCAGCGGCGTCATCATGGCCGTCAAGAGGATTCGTGCTACGGTCAACACTCTGGAACAGAAGAGGCTCCTGATGGACCTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACCGTCACCTTCTACGGCGCTCTCTTCAGAGAGGGGGACGTTTGGATCTGTATGGAGCTGATGGACACGTCTCTGGACAAATTCTACAAGAAGGTTATCGAGAAAGGCAAAACCATCCCAGAGGACATCTTGGGAAAGATAACAGTAGCGATTGTAAAGGCGTTAGAACATCTCCACAGTAACCTGTCAGTCATACACAGAGATGTGAAACCCTCCAATGTTCTGATCAACACCTTGGGCCAGGTGAAAATGTGCGATTTCGGCATCAGCGGCCACCTGGTG] [+] EMBL FR0058995 [ AAGCTAGCCAAAGATGTTTTCACACGAGCCGCACCACCAGCAGCGCCTCCCCGAGATCTCGACTCCAAAGCTTGCGTCACCAACGGAGATCAGAACTTTGAGGTGAAGGCCGACGACTTGGAGCCGATTGAAGAGCTGGGGCGGGGAGCGTACGGCGTGGTGGAGAAGATGAGACACGTGCCCAGCGGCGTCATCATGGCCGTCAAGAGGATTCGTGCTACGGTCAACACTCTGGAACAGAAGAGGCTCCTGATGGACCTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACCGGCACCTTCTACGGCGCTCTCTTCAGAGAGGGGGACGGTTGGATCTGTATGGAGCTGATGGACACGTCTCTGGACAAATTCTACAAGAA GGTATCGAGAAAGGC AGACCATCCCAGAGGACAT ] [+] EMBL FR0058117 [ AATCTATCCAGAGAGGTTTACACACAGCCGGCACCACCAGCAGCGCCTCCCCGAGATCTCGACTCCAAAGCTTGCGTCACCATCGGAGATCAGAACTTTGAGGTGAAGGCCGACGACTTGGAGCCGATTGAAGAGCTGGGGCGGGGAGCGTACGGCGTGGTGGAGAAGATGAGACACGTGCCCAGCGGCGTCATCATGGCCGTCAAGAGGATTCGTGCTACGGTCAACACTCTGGAACAGAAGAGGCTCCTGATGGACCTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACCGTCACCTTCTACGGCGCTCTCTTCAGAGAGGGGGACGTTTGGATCTGTATGGAGCTGATGGACACGTCTCTGGACAAATTCTACAAGAAGGGTATCGAGAAAGGCANAANC ] [+] EMBL FR0060201 [ CACACAGCCGGCACCACCAGCAGCGCCTCCCCGAGATCTCGACTCCAAAGCTTGCGTCACCATCGGAGATCAGAACTTTGAGGTGAAGGCCGACGACTTGGAGCCGATTGAAGAGCTGGGGCGGAGAGCGTACGGCGTGGTGGAGAAGATGAGACACGTGCCCAGCGGCGTCATCATGGCCGTCAAGAGGATTCGTGCTACGGTCAACACTCTGGAACAGAAGAGGCTCCTGATGGACCTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACCGGCACCTTCTACGGCG ] consensusID : consensus_2308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence [GACATGCCGATTGGAGCATTACAGATTGCACCAACGTTTAGTTTTAATCGCTCCTAGGGCTTTTTTTTTTTTTTTTTTTTTGCAGAAGCCAGCGATCCTGAGCGGGTAGATGCAGGGAGGGATGCAGGGAGGGAAGGAAGGTGGGAGGGAGGGANNNANNNNNNGNNNNNGNNTTTGNGNTTNCCTTCCCNCTCNTTNNNGCNANGGGGANNTGTCTCTGTCTTTTTTTTTCNAGGNANAGAAGAACCCCGGGCTGAAGCTGGCCCAAAATGTTTTTCCACAGCCGGCACCACCAGCAGCGCCTCCCCGAAATCTCGACTCCAAAGCTTGCGTAACCATCGGAGATCACAGCTTTGAGGGGAGGGCGGACGACTTGGAGCAGATTGAA] [+] EMBL CA591683 [GACATGCCGATTGGAGCATTACAGATTGCACCAACGTTTAGTTTTAATCGCTCCTAGGGCTTTTTTTTTTTTTTTTTTTTTGCAGAAGCCAGCGATCCTGAGCGGGTAGATGCAGGGAGGGATGCAGGGAGGGAAGGAAGGTGGGAGGGAGGGANNNANNNNNNGNNNNNGNNTTTGNGNTTNCCTTCCCNCTCNTTNNNGCNANGGGGANNTGTCTCTGTCTTTTTTTTTCNAGGNANAGAAGAACCCCGGGCTGAAGCTGGCCCAAAATGTTTTTCCACAGCCGGCACCACCAGCAGCGCCTCCCCGAAATCTCGACTCCAAAGCTTGCGTAACCATCGGAGATCACAGCTTTGAGGGGAGGGCGGACGACTTGGAGCAGATTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2308#0 AAATGTCTCTGTCTAAAGGAGCAAAGAAAAAGAAGAACCCCGGGCTGAAGCTAGCCAAAG 60 consensus_2308#1 ----------------------------------GACATGCCGATTGGAGC--ATTACAG 24 ** * * ** *** * ** consensus_2308#0 ATGTTTTCACACAGCCGGCACCACCAGCAGCGCCTCCCCGAGATCTCGACTCCAAAGCTT 120 consensus_2308#1 ATTGCACCA-ACGTTTAGTTTTAATCGC------TCCTAGGGCTTTTTTTTTT-----TT 72 ** ** ** * * ** *** * * * * * ** consensus_2308#0 GCGTCACCATCGGAGATCAGAACTTTGAGGTGAAGGCCGACGACTTGGAGCCGATTGAAG 180 consensus_2308#1 TTTTTTTTTGCAGAAGCCAGCGATCCTGAGCGGGTAGATGCAGGGAGGGATGCAGGGAGG 132 * * ** *** * * * * ** * ** * consensus_2308#0 AGCTGGGGCGGGGAGCGTACGGCGTGGTGGAGAAGATGAGACACGTGCCCAGCGGCGTCA 240 consensus_2308#1 GAAGGAAGGTGGGAGGGAGGGANNNANNNNNNGNNNNNGNNTTTGNGNTTNCCTTCCCNC 192 * * ***** * * * * * * consensus_2308#0 TCATGGCCGTCAAGAGGATTCGTG-CTACGGTCAACACTCT-GGAACAGAAGAGGCTCCT 298 consensus_2308#1 TCNTTNNNGCNANGGGGANNTGTCTCTGTCTTTTTTTTTCNAGGNANAGAAGAACCCCGG 252 ** * * * * *** ** ** * ** ** * ****** * * consensus_2308#0 GATGGACCTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACCGGCACCTTCTACGG 358 consensus_2308#1 GCTGAAGCTGGCC-------------CAAAATGTTTTTCCACAGCCGGCACCACCAGCAG 299 * ** * **** * ** * * * ******** * * * consensus_2308#0 CGCTCTCTTCAGAGAGGGGGACGTTTGGATCTGTATGGA-GCTGATGGACACGTCTCTGG 417 consensus_2308#1 CGCCTCCCC--GAAATCTCGACTCCAAAGCTTGCGTAACCATCGGAGATCACAGCTTTGA 357 *** * ** * *** ** * * * *** ** ** consensus_2308#0 ACAAATTCTACAAGAAGGGTATCGAGAAAGGCAAAACCATCCCAGAGGACATCTTGGGAA 477 consensus_2308#1 GGGGA----GGGCGGACGACTTGGAGCAGATTGAA------------------------- 388 * * * * * *** * ** consensus_2308#0 AGATAACAGTAGCGATTGTAAAGGCGTTAGAACATCTCCACAGTAACCTGTCAGTCATAC 537 consensus_2308#1 ------------------------------------------------------------ consensus_2308#0 ACAGAGATGTGAAACCCTCCAATGTTCTGATCAACACCTTGGGCCAGGTGAAAATGTGCG 597 consensus_2308#1 ------------------------------------------------------------ consensus_2308#0 ATTTCGGCATCAGCGGCCACCTGGTG 623 consensus_2308#1 -------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |