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Takifugu rubripes
cluster # 2308 cluster # 2308       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2308#0 length = 623 sequences # 4  
consensus_2308#1 length = 388 sequences # 1  

consensusID : consensus_2308#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 623
fasta sequence
                              [AAATGTCTCTGTCTAAAGGAGCAAAGAAAAAGAAGAACCCCGGGCTGAAGCTAGCCAAAGATGTTTTCACACAGCCGGCACCACCAGCAGCGCCTCCCCGAGATCTCGACTCCAAAGCTTGCGTCACCATCGGAGATCAGAACTTTGAGGTGAAGGCCGACGACTTGGAGCCGATTGAAGAGCTGGGGCGGGGAGCGTACGGCGTGGTGGAGAAGATGAGACACGTGCCCAGCGGCGTCATCATGGCCGTCAAGAGGATTCGTGCTACGGTCAACACTCTGGAACAGAAGAGGCTCCTGATGGACCTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACCGGCACCTTCTACGGCGCTCTCTTCAGAGAGGGGGACGTTTGGATCTGTATGGAGCTGATGGACACGTCTCTGGACAAATTCTACAAGAAGGGTATCGAGAAAGGCAAAACCATCCCAGAGGACATCTTGGGAAAGATAACAGTAGCGATTGTAAAGGCGTTAGAACATCTCCACAGTAACCTGTCAGTCATACACAGAGATGTGAAACCCTCCAATGTTCTGATCAACACCTTGGGCCAGGTGAAAATGTGCGATTTCGGCATCAGCGGCCACCTGGTG]

[+] EMBL CA591320             [AAATGTCTCTGTCTAAAGGAGCAAAGAAAAAGAAGAACCCCGGGCTGAAGCTAGCCAAAGATGTTTTCACACAGCCGGCACCACCAGCAGCGCCTCCCCGAGATCTCGACTCCAAAGCTTGCGTCACCATCGGAGATCAGAACTTTGAGGTGAAGGCCGACGACTTGGAGCCGATTGAAGAGCTGGGGCGGGGAGCGTACGGCGTGGTGGAGAAGATGAGACACGTGCCCAGCGGCGTCATCATGGCCGTCAAGAGGATTCGTGCTACGGTCAACACTCTGGAACAGAAGAGGCTCCTGATGGACCTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACCGTCACCTTCTACGGCGCTCTCTTCAGAGAGGGGGACGTTTGGATCTGTATGGAGCTGATGGACACGTCTCTGGACAAATTCTACAAGAAGGTTATCGAGAAAGGCAAAACCATCCCAGAGGACATCTTGGGAAAGATAACAGTAGCGATTGTAAAGGCGTTAGAACATCTCCACAGTAACCTGTCAGTCATACACAGAGATGTGAAACCCTCCAATGTTCTGATCAACACCTTGGGCCAGGTGAAAATGTGCGATTTCGGCATCAGCGGCCACCTGGTG]
[+] EMBL FR0058995            [                                               AAGCTAGCCAAAGATGTTTTCACACGAGCCGCACCACCAGCAGCGCCTCCCCGAGATCTCGACTCCAAAGCTTGCGTCACCAACGGAGATCAGAACTTTGAGGTGAAGGCCGACGACTTGGAGCCGATTGAAGAGCTGGGGCGGGGAGCGTACGGCGTGGTGGAGAAGATGAGACACGTGCCCAGCGGCGTCATCATGGCCGTCAAGAGGATTCGTGCTACGGTCAACACTCTGGAACAGAAGAGGCTCCTGATGGACCTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACCGGCACCTTCTACGGCGCTCTCTTCAGAGAGGGGGACGGTTGGATCTGTATGGAGCTGATGGACACGTCTCTGGACAAATTCTACAAGAA GGTATCGAGAAAGGC AGACCATCCCAGAGGACAT                                                                                                                                                          ]
[+] EMBL FR0058117            [                                               AATCTATCCAGAGAGGTTTACACACAGCCGGCACCACCAGCAGCGCCTCCCCGAGATCTCGACTCCAAAGCTTGCGTCACCATCGGAGATCAGAACTTTGAGGTGAAGGCCGACGACTTGGAGCCGATTGAAGAGCTGGGGCGGGGAGCGTACGGCGTGGTGGAGAAGATGAGACACGTGCCCAGCGGCGTCATCATGGCCGTCAAGAGGATTCGTGCTACGGTCAACACTCTGGAACAGAAGAGGCTCCTGATGGACCTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACCGTCACCTTCTACGGCGCTCTCTTCAGAGAGGGGGACGTTTGGATCTGTATGGAGCTGATGGACACGTCTCTGGACAAATTCTACAAGAAGGGTATCGAGAAAGGCANAANC                                                                                                                                                                        ]
[+] EMBL FR0060201            [                                                                   CACACAGCCGGCACCACCAGCAGCGCCTCCCCGAGATCTCGACTCCAAAGCTTGCGTCACCATCGGAGATCAGAACTTTGAGGTGAAGGCCGACGACTTGGAGCCGATTGAAGAGCTGGGGCGGAGAGCGTACGGCGTGGTGGAGAAGATGAGACACGTGCCCAGCGGCGTCATCATGGCCGTCAAGAGGATTCGTGCTACGGTCAACACTCTGGAACAGAAGAGGCTCCTGATGGACCTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACCGGCACCTTCTACGGCG                                                                                                                                                                                                                                                                       ]


>consensus_2308#0 AAATGTCTCTGTCTAAAGGAGCAAAGAAAAAGAAGAACCCCGGGCTGAAGCTAGCCAAAG ATGTTTTCACACAGCCGGCACCACCAGCAGCGCCTCCCCGAGATCTCGACTCCAAAGCTT GCGTCACCATCGGAGATCAGAACTTTGAGGTGAAGGCCGACGACTTGGAGCCGATTGAAG AGCTGGGGCGGGGAGCGTACGGCGTGGTGGAGAAGATGAGACACGTGCCCAGCGGCGTCA TCATGGCCGTCAAGAGGATTCGTGCTACGGTCAACACTCTGGAACAGAAGAGGCTCCTGA TGGACCTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACCGGCACCTTCTACGGCG CTCTCTTCAGAGAGGGGGACGTTTGGATCTGTATGGAGCTGATGGACACGTCTCTGGACA AATTCTACAAGAAGGGTATCGAGAAAGGCAAAACCATCCCAGAGGACATCTTGGGAAAGA TAACAGTAGCGATTGTAAAGGCGTTAGAACATCTCCACAGTAACCTGTCAGTCATACACA GAGATGTGAAACCCTCCAATGTTCTGATCAACACCTTGGGCCAGGTGAAAATGTGCGATT TCGGCATCAGCGGCCACCTGGTG



consensusID : consensus_2308#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence
                              [GACATGCCGATTGGAGCATTACAGATTGCACCAACGTTTAGTTTTAATCGCTCCTAGGGCTTTTTTTTTTTTTTTTTTTTTGCAGAAGCCAGCGATCCTGAGCGGGTAGATGCAGGGAGGGATGCAGGGAGGGAAGGAAGGTGGGAGGGAGGGANNNANNNNNNGNNNNNGNNTTTGNGNTTNCCTTCCCNCTCNTTNNNGCNANGGGGANNTGTCTCTGTCTTTTTTTTTCNAGGNANAGAAGAACCCCGGGCTGAAGCTGGCCCAAAATGTTTTTCCACAGCCGGCACCACCAGCAGCGCCTCCCCGAAATCTCGACTCCAAAGCTTGCGTAACCATCGGAGATCACAGCTTTGAGGGGAGGGCGGACGACTTGGAGCAGATTGAA]

[+] EMBL CA591683             [GACATGCCGATTGGAGCATTACAGATTGCACCAACGTTTAGTTTTAATCGCTCCTAGGGCTTTTTTTTTTTTTTTTTTTTTGCAGAAGCCAGCGATCCTGAGCGGGTAGATGCAGGGAGGGATGCAGGGAGGGAAGGAAGGTGGGAGGGAGGGANNNANNNNNNGNNNNNGNNTTTGNGNTTNCCTTCCCNCTCNTTNNNGCNANGGGGANNTGTCTCTGTCTTTTTTTTTCNAGGNANAGAAGAACCCCGGGCTGAAGCTGGCCCAAAATGTTTTTCCACAGCCGGCACCACCAGCAGCGCCTCCCCGAAATCTCGACTCCAAAGCTTGCGTAACCATCGGAGATCACAGCTTTGAGGGGAGGGCGGACGACTTGGAGCAGATTGAA]


>consensus_2308#1 GACATGCCGATTGGAGCATTACAGATTGCACCAACGTTTAGTTTTAATCGCTCCTAGGGC TTTTTTTTTTTTTTTTTTTTTGCAGAAGCCAGCGATCCTGAGCGGGTAGATGCAGGGAGG GATGCAGGGAGGGAAGGAAGGTGGGAGGGAGGGANNNANNNNNNGNNNNNGNNTTTGNGN TTNCCTTCCCNCTCNTTNNNGCNANGGGGANNTGTCTCTGTCTTTTTTTTTCNAGGNANA GAAGAACCCCGGGCTGAAGCTGGCCCAAAATGTTTTTCCACAGCCGGCACCACCAGCAGC GCCTCCCCGAAATCTCGACTCCAAAGCTTGCGTAACCATCGGAGATCACAGCTTTGAGGG GAGGGCGGACGACTTGGAGCAGATTGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2308#0      AAATGTCTCTGTCTAAAGGAGCAAAGAAAAAGAAGAACCCCGGGCTGAAGCTAGCCAAAG 60
consensus_2308#1      ----------------------------------GACATGCCGATTGGAGC--ATTACAG 24
                                                        **    * *  ** ***     * **

consensus_2308#0      ATGTTTTCACACAGCCGGCACCACCAGCAGCGCCTCCCCGAGATCTCGACTCCAAAGCTT 120
consensus_2308#1      ATTGCACCA-ACGTTTAGTTTTAATCGC------TCCTAGGGCTTTTTTTTTT-----TT 72
                      **     ** **     *    *   **      ***  * * * *    *       **

consensus_2308#0      GCGTCACCATCGGAGATCAGAACTTTGAGGTGAAGGCCGACGACTTGGAGCCGATTGAAG 180
consensus_2308#1      TTTTTTTTTGCAGAAGCCAGCGATCCTGAGCGGGTAGATGCAGGGAGGGATGCAGGGAGG 132
                         *      * **   ***   *     * *        *     **     *  ** *

consensus_2308#0      AGCTGGGGCGGGGAGCGTACGGCGTGGTGGAGAAGATGAGACACGTGCCCAGCGGCGTCA 240
consensus_2308#1      GAAGGAAGGTGGGAGGGAGGGANNNANNNNNNGNNNNNGNNTTTGNGNTTNCCTTCCCNC 192
                          *  *  ***** *   *                       * *     *  *    

consensus_2308#0      TCATGGCCGTCAAGAGGATTCGTG-CTACGGTCAACACTCT-GGAACAGAAGAGGCTCCT 298
consensus_2308#1      TCNTTNNNGCNANGGGGANNTGTCTCTGTCTTTTTTTTTCNAGGNANAGAAGAACCCCGG 252
                      ** *    *  * * ***   **  **    *      **  ** * ******  * *  

consensus_2308#0      GATGGACCTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACCGGCACCTTCTACGG 358
consensus_2308#1      GCTGAAGCTGGCC-------------CAAAATGTTTTTCCACAGCCGGCACCACCAGCAG 299
                      * ** * **** *             **      *  * *    ********  *  * *

consensus_2308#0      CGCTCTCTTCAGAGAGGGGGACGTTTGGATCTGTATGGA-GCTGATGGACACGTCTCTGG 417
consensus_2308#1      CGCCTCCCC--GAAATCTCGACTCCAAAGCTTGCGTAACCATCGGAGATCACAGCTTTGA 357
                      ***   *    ** *    ***         **  *       *  *  ***  ** ** 

consensus_2308#0      ACAAATTCTACAAGAAGGGTATCGAGAAAGGCAAAACCATCCCAGAGGACATCTTGGGAA 477
consensus_2308#1      GGGGA----GGGCGGACGACTTGGAGCAGATTGAA------------------------- 388
                          *        * * *   * *** *     **                         

consensus_2308#0      AGATAACAGTAGCGATTGTAAAGGCGTTAGAACATCTCCACAGTAACCTGTCAGTCATAC 537
consensus_2308#1      ------------------------------------------------------------
                                                                                  

consensus_2308#0      ACAGAGATGTGAAACCCTCCAATGTTCTGATCAACACCTTGGGCCAGGTGAAAATGTGCG 597
consensus_2308#1      ------------------------------------------------------------
                                                                                  

consensus_2308#0      ATTTCGGCATCAGCGGCCACCTGGTG 623
consensus_2308#1      --------------------------
                                                




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)