These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 706 fasta sequence [CAGTTTCATCACCTTTTCTGTGTTTTTGTGCACATTTAGTCAATATTATGACCAAAACGTTCTTCTCTTCACGTCTGCATTTTGTGCATTATTCTGAATGGAAAGTTACGATCGTGAACAGATAATCTATGTTGGTCTAGTACTTTTTAATTTCTACGGAAGCCTGATGCTGCCAACCCAGACACAAGAGGGGTAAGTTTAGTGTAGAGCTCCAGGTTCATCTCAACTCGACGGTTCCTGAGGCAA-AGGTGACAGAACTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACGCTAAAGCCTGAAGGGTTTAATCTGGTTACTCGTTTTGGTGCCACCGCAGGGAATGTCCAGGTGGACATCCTGATCCAGAGGATTTACCCCCAGACACCAGCAACGGAAACACAGGAGAAGACTCTCTGACACAGATGGCCACACCTGAACATTCTTACAACCTGCTGGTTGATGAGGCAAATAATCAGCTAAAAGGGCAAACTAAAGCAGTAATGCCAGAAAATGCACTTATGAAACATGAAGACAGGAAGGATTTTGCTCAGGTCCAGGACTCGGATGAGTTACCAGACCGCCCCCCTCCCTGTGGGATGTCATCCACCAAATGCATCCTGTCTGATGAAGTGACCCCAAAGACTGAAGGTTGGGCAATGGAGTGGCACAAACATCAAATGGCCGCGATCAGCAGTGAGACAT] [+] EMBL BU807743 [CAGTTTCATCACCTTTTCTGTGTTTTTGTGCACATTTAGTCAATATTATGACCAAAACGTTCTTCTCTTCACGTCTGCATTTTGTGCATTATTCTGAATGGAAAGTTACGATCGTGAACAGATAATCTATGTTGGTCTAGTACTTTTTAATTTCTACGGAAGCCTGATGCTGCCAACCCAGACACAAGAGGGGTAAGTTTAGTGTAGAGCTCCAGGTTCATCTCAACTCGACGGTTCCTGAGGTAATATGTGACAGAACTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACGCTAAAGCCTGAAGGGTTTAATCTGGTTACTCGTTTTGGTGCCACCGCAGGGAATGTCCAGGTGGACATCCTGATCCAGAGGATTTACCCCCAGACACCAGCAACGGAAACACAGGAGAAGACTCTCTGACACAGATGGCCACACCTGAACATTCTTACAACCTGCTGGTTGATGAGGCAAATAATCAGCTAAAAGGGCAAACTAAAGCAGTAATGCCAGAAAATGCACTTATGAAACATGAAGACAGG ] [+] EMBL CA590242 [ GGGTAAGTTTAGTGTAGAGCTCCAGGTTCATCTCAACTCGACGGTTCCTGAGGCAA AGGTGACAGAACTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACGCTAAAGCCTGAAGGGTTTAATCTGGTTACTCGTTTTGGTGCCACCGCAGGGAATGTCCAGGTGGACATCCTGATCCAGAGGATTTACCCCCAGACACTAGCAACGGAAACACAGGAGAAGACTCTCTGACACAGATGGCCACACCTGAACATTCTTACAACCTGCTGGTTGATGAGGCAAATAATCAGCTAAAAGGGCAAACTAAAGCAGTAATGCCAGAAAATGCACTTATGAAACATGAAGACAGGAAGGATTTTGCTCAGGTCCAGGACTCGGATGAGTTACCAGACCGCCCCCCTCCCTGTGGGATGTCATCCACCAAATGCATCCTGTCTGATGAAGTGACCCCAAAGACTGAAGGTTGGGCAATGGAGTGGCACAAACATCAAATGGCCGCGATCAGCAGTGAGACAT] consensusID : consensus_2327#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence [CTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACCCTAAAGCCTGAAGGTAATAATCCAGGTTATGAACATTTAAAGGGTTTAATCTGGTTACTCGTTTTGGTGCCACCGCAGGGAATGTCCAGGTGGACATCCTGATCCAGAGGATTTACCCCCAGACACCAGCAACGGAAACACAGGAGAAGACTCTCTGACACAGATGGCCACACCTGAACATTCTTACAACCTGCTGGTTGATGAGGCAAATAATCAGCTAAAAGGGCAAACTAAAGCAGTAATGCCAGAAAATGCACTTATGAAACATGAAGACAGGAAGGATTTTGCTCAGGTCCAGGACTCGGATGAGTTACCAGACCGCCCCCCTCCCTGTGGGATGTCATCCACCAAATGCATCCTGTCTGATGAAGTGACCCCAAAGACTGAAGGTTGGGCAATGGAGTGGCACAAACATCAAATGGCCGCGATCAGCAGTGAGACATTTGACAGCCTCCTGAAGACAAGTCCTGAATACTCTGGTTGTAGAAGCAACATGGCCACCTTTGTCATAACAAGA] [+] EMBL CA590681 [CTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACCCTAAAGCCTGAAGGTAATAATCCAGGTTATGAACATTTAAAGGGTTTAATCTGGTTACTCGTTTTGGTGCCACCGCAGGGAATGTCCAGGTGGACATCCTGATCCAGAGGATTTACCCCCAGACACCAGCAACGGAAACACAGGAGAAGACTCTCTGACACAGATGGCCACACCTGAACATTCTTACAACCTGCTGGTTGATGAGGCAAATAATCAGCTAAAAGGGCAAACTAAAGCAGTAATGCCAGAAAATGCACTTATGAAACATGAAGACAGGAAGGATTTTGCTCAGGTCCAGGACTCGGATGAGTTACCAGACCGCCCCCCTCCCTGTGGGATGTCATCCACCAAATGCATCCTGTCTGATGAAGTGACCCCAAAGACTGAAGGTTGGGCAATGGAGTGGCACAAACATCAAATGGCCGCGATCAGCAGTGAGACATTTGACAGCCTCCTGAAGACAAGTCCTGAATACTCTGGTTGTAGAAGCAACATGGCCACCTTTGTCATAACAAGA] consensusID : consensus_2327#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [CATATATCATAAAACAGCTCCAAACAGTTTCATCACCTTTTCTGTGTTTTTGTGCACATTTAGTCAATATTATGACCAAAACGTTCTTCTCTTCACGTCTGCATTTTGTGCATTATTCTGAATGGAAAGTTACGATCGTGAACAGATAATCTATGTTGGTCTAGTACTTTTTAATTTCTACGGAAGCCTGATGCTGCCAACCCAGACACAAGTTAGAAACATCTTGCTGTACCGTATAGTCATTATATTTATTGTGCGGGGTGGTACTAATATAATGGTACACCTTATCATTACCTAGGAGGGGTAAGTTTAGTGTAGAGCCCCAGGTTCATCTCAACTCGACGGTTCCTGAGGCAAAGGTGACAGAACTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACGCTAAAGCCTGAAGGGTTTAATCTGGTTACTCGTTTTGGTGCCACCGCAGGGAATGTCCAGGT] [+] EMBL CA590601 [CATATATCATAAAACAGCTCCAAACAGTTTCATCACCTTTTCTGTGTTTTTGTGCACATTTAGTCAATATTATGACCAAAACGTTCTTCTCTTCACGTCTGCATTTTGTGCATTATTCTGAATGGAAAGTTACGATCGTGAACAGATAATCTATGTTGGTCTAGTACTTTTTAATTTCTACGGAAGCCTGATGCTGCCAACCCAGACACAAGTTAGAAACATCTTGCTGTACCGTATAGTCATTATATTTATTGTGCGGGGTGGTACTAATATAATGGTACACCTTATCATTACCTAGGAGGGGTAAGTTTAGTGTAGAGCCCCAGGTTCATCTCAACTCGACGGTTCCTGAGGCAAAGGTGACAGAACTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACGCTAAAGCCTGAAGGGTTTAATCTGGTTACTCGTTTTGGTGCCACCGCAGGGAATGTCCAGGT] consensusID : consensus_2327#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [TGAGGCAAAGGTGACAGAACTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACGCTAAAGCCTGAAGGTAATAATCCAGGTTATGAACATTTAAAGGTAGTAACCCAGGTTATGTTCATTTACAGGTACTAATCCAGGTTATATTCATTTACAGGTAATAATCCAGGTTATGTTCACTTTACAGGGTTAATCTGGGTACTCGTTTTGGGGCCACCGCAGGGAATGTCCAAGGTGACATCCTGATCCAGAGGATTTACCCCCCAGACACC] [+] EMBL FR0060219 [TGAGGCAAAGGTGACAGAACTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACGCTAAAGCCTGAAGGTAATAATCCAGGTTATGAACATTTAAAGGTAGTAACCCAGGTTATGTTCATTTACAGGTACTAATCCAGGTTATATTCATTTACAGGTAATAATCCAGGTTATGTTCACTTTACAGGGTTAATCTGGGTACTCGTTTTGGGGCCACCGCAGGGAATGTCCAAGGTGACATCCTGATCCAGAGGATTTACCCCCCAGACACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2327#1 ------------------------------------------------------------ consensus_2327#3 ------------------------------------------------------------ consensus_2327#0 CAGTTTCATCACCTTTTCTGTGTTTTTGTGCACATTTAGTCAATATTATGACCAAAACGT 60 consensus_2327#2 ------------------------------------------------------------ consensus_2327#1 ------------------------------------------------------------ consensus_2327#3 ------------------------------------------------------------ consensus_2327#0 TCTTCTCTTCACGTCTGCATTTTGTGCATTATTCTGAATGGAAAGTTACGATCGTGAACA 120 consensus_2327#2 ------------------------------------------------------------ consensus_2327#1 ------------------------------------------------------------ consensus_2327#3 ------------------------------------------------------------ consensus_2327#0 GATAATCTATGTTGGTCTAGTACTTTTTAATTTCTACGGAAGCCTGATGCTGCCAACCCA 180 consensus_2327#2 ------------------------------------------------------------ consensus_2327#1 ------------------------------------------------------------ consensus_2327#3 ----------------------------------------------------------TG 2 consensus_2327#0 GACACAAGAGGGGTAAGTTTAGTGTAGAGCTCCAGGTTCATCTCAACTCGACGGTTCCTG 240 consensus_2327#2 ------------------------------------------------------CATATA 6 consensus_2327#1 -----------------CTGGTCGCTAC-CCGCTCCTGTGCTCGATTTGGACCCTAAAGC 42 consensus_2327#3 AGGCAAAGGTGACAGAACTGGTCGCTAC-CCGCTCCTGTGCTCGATTTGGACGCTAAAGC 61 consensus_2327#0 AGGCAAAGGTGACAGAACTGGTCGCTAC-CCGCTCCTGTGCTCGATTTGGACGCTAAAGC 299 consensus_2327#2 TCATAAAACAGCTCCAAACAGTTTCATCACCTTTTCTGTGTTTT-TGTGCACATTTAGTC 65 ** * * ** * ***** * * ** ** * * * consensus_2327#1 CTGAAGGTAATAATCCAGGTTATGAACATTTAAAGGGTTTAATCT---GGTTA--CTCGT 97 consensus_2327#3 CTGAAGGTAATAATCCAGGTTATGAACATTTAAAGGTAGTAACCCA--GGTTATGTTCAT 119 consensus_2327#0 CTGAAGG-----------GTT------------------TAATCT---GGTTA--CTCGT 325 consensus_2327#2 ---AATATTATGACCAAAACGTTCTTCTCTTCACGTCTGCATTTTGTGCATTATTCTGAA 122 ** * *** * consensus_2327#1 TT--TGGTGCCACCGCAGGGAATGT---CCAGGTGGACATCCTGATCCAGAGGATTTAC- 151 consensus_2327#3 TTACAGGTACTAATCCAGGTTATAT---TCATTTACAGGTAATAATCCAGGTTATGTTC- 175 consensus_2327#0 TT--TGGTGCCACCGCAGGGAATGT---CCAGGTGGACATCCTGATCCAGAGGATTTAC- 379 consensus_2327#2 TGGAAAGTTACGATCGTGAACAGATAATCTATGTTGGTCTAGTACTTTTTAATTTCTACG 182 * ** * * * * * * * * * * * consensus_2327#1 --CCCCAGACACCAGCAACGGAAACACAGGAGAAGACTCTCTGACACAGATGGCCACACC 209 consensus_2327#3 --ACTTT-ACAGGGTTAATCTGGGTACTCGTTTTGGGGCCACCGCAGGGAATGTCCAAGG 232 consensus_2327#0 --CCCCAGACACCAGCAACGGAAACACAGGAGAAGACTCTCTGACACAGATGGCCACACC 437 consensus_2327#2 GAAGCCTGATGCTGCCAACCCAGACACAAGTTAGAAACATCTTGC-TGTACCGT--ATAG 239 * ** ** * * * * consensus_2327#1 TGAACATTCTTACAACCTGCTGGTTGATGAGGCAAATAATCAGCTAAAAGGGCAAACTAA 269 consensus_2327#3 TGA-CATCCTGAT--CCAGAGGATTTACCCCCCAGACACC-------------------- 269 consensus_2327#0 TGAACATTCTTACAACCTGCTGGTTGATGAGGCAAATAATCAGCTAAAAGGGCAAACTAA 497 consensus_2327#2 TCATTATATTTATTGTGCGGGGTGGTACTAATATAATGGTACACCTTATCATTACCTAGG 299 * * ** * * * * * * consensus_2327#1 AGCAGTAATGCCAGAAAATGCACTTATGAA-ACATGAAGACAGGAAGGATTTTGCTCAGG 328 consensus_2327#3 ------------------------------------------------------------ consensus_2327#0 AGCAGTAATGCCAGAAAATGCACTTATGAA-ACATGAAGACAGGAAGGATTTTGCTCAGG 556 consensus_2327#2 AGGGGTAAGTTTAGTGTAGAGCCCCAGGTTCATCTCAACTCGACGGTTCCTGAGGCAAAG 359 consensus_2327#1 TCCAGGACTCGGATGAGTTACCAGACCGCCCCCCTCCCTGTGGGATGTCATCCACCAAAT 388 consensus_2327#3 ------------------------------------------------------------ consensus_2327#0 TCCAGGACTCGGATGAGTTACCAGACCGCCCCCCTCCCTGTGGGATGTCATCCACCAAAT 616 consensus_2327#2 GTGACAGAACTGGTCGCTACCCGCTCCTGTGCTCGATTTGGACGCTAAAGCCTGAAGGGT 419 consensus_2327#1 GCATCCTGTCTGATGAAGTGACCCCAAAGACTGAAGGTTGGGCAATGGAGTGGCACAAAC 448 consensus_2327#3 ------------------------------------------------------------ consensus_2327#0 GCATCCTGTCTGATGAAGTGACCCCAAAGACTGAAGGTTGGGCAATGGAGTGGCACAAAC 676 consensus_2327#2 TTAATCTGGTTACTCGTTTTGGTGCCACCGCAGGGAATGTCCAGGT-------------- 465 consensus_2327#1 ATCAAATGGCCGCGATCAGCAGTGAGACATTTGACAGCCTCCTGAAGACAAGTCCTGAAT 508 consensus_2327#3 ------------------------------------------------------------ consensus_2327#0 ATCAAATGGCCGCGATCAGCAGTGAGACAT------------------------------ 706 consensus_2327#2 ------------------------------------------------------------ consensus_2327#1 ACTCTGGTTGTAGAAGCAACATGGCCACCTTTGTCATAACAAGA 552 consensus_2327#3 -------------------------------------------- consensus_2327#0 -------------------------------------------- consensus_2327#2 -------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |