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Takifugu rubripes
cluster # 2339 cluster # 2339       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2339#0 length = 591 sequences # 1  
consensus_2339#1 length = 476 sequences # 3  
consensus_2339#2 length = 93 sequences # 1  

consensusID : consensus_2339#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence
                              [CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACAAAGAGTAATCGAGGCTAACAGAATCTCCAAGGTGAACGACAAAGGCGAAATAATGCGTCACTTTTTATTGCGCCTAGAGGATTTGGGTGTTTTTCCGTGGTCGTTGGTGGCTAGCTCGCCTGTGCTAGCAGGAGTCGACCTCGAGGCGAACAGCAGCCATCATGGCACTAAAGTAACAGGCCGAACCAACCTAACGCAGTTTAATCCATAATTGAACAAGAGTACAGTTTGGACGGACATATTTTGCGTTGTTTTTATTAACGTATATATTCCCATTGTTGGGGCGTGTTGCCGCAGCGAGAGCTGCTAGCTAGCATGCTACAACAAGGCCCGCCTCGTTGAATGATTCGATGGTTTCGGTGGTCATAATTTTAATAGAATAATATTGCTGATGTGACTAATCGACATGGTTTTGTATGGTCCACCAGGCCTTGATGTGATTAAAACGGGGATACACGTGCATCTTAATCTCAACTAATTTTTGGCTTTGCTTAATCGCGTCATTCGTCTTTAACGTATTTTTTCTACCGT]

[+] EMBL CA589913             [CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACAAAGAGTAATCGAGGCTAACAGAATCTCCAAGGTGAACGACAAAGGCGAAATAATGCGTCACTTTTTATTGCGCCTAGAGGATTTGGGTGTTTTTCCGTGGTCGTTGGTGGCTAGCTCGCCTGTGCTAGCAGGAGTCGACCTCGAGGCGAACAGCAGCCATCATGGCACTAAAGTAACAGGCCGAACCAACCTAACGCAGTTTAATCCATAATTGAACAAGAGTACAGTTTGGACGGACATATTTTGCGTTGTTTTTATTAACGTATATATTCCCATTGTTGGGGCGTGTTGCCGCAGCGAGAGCTGCTAGCTAGCATGCTACAACAAGGCCCGCCTCGTTGAATGATTCGATGGTTTCGGTGGTCATAATTTTAATAGAATAATATTGCTGATGTGACTAATCGACATGGTTTTGTATGGTCCACCAGGCCTTGATGTGATTAAAACGGGGATACACGTGCATCTTAATCTCAACTAATTTTTGGCTTTGCTTAATCGCGTCATTCGTCTTTAACGTATTTTTTCTACCGT]


>consensus_2339#0 CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACA AAGAGTAATCGAGGCTAACAGAATCTCCAAGGTGAACGACAAAGGCGAAATAATGCGTCA CTTTTTATTGCGCCTAGAGGATTTGGGTGTTTTTCCGTGGTCGTTGGTGGCTAGCTCGCC TGTGCTAGCAGGAGTCGACCTCGAGGCGAACAGCAGCCATCATGGCACTAAAGTAACAGG CCGAACCAACCTAACGCAGTTTAATCCATAATTGAACAAGAGTACAGTTTGGACGGACAT ATTTTGCGTTGTTTTTATTAACGTATATATTCCCATTGTTGGGGCGTGTTGCCGCAGCGA GAGCTGCTAGCTAGCATGCTACAACAAGGCCCGCCTCGTTGAATGATTCGATGGTTTCGG TGGTCATAATTTTAATAGAATAATATTGCTGATGTGACTAATCGACATGGTTTTGTATGG TCCACCAGGCCTTGATGTGATTAAAACGGGGATACACGTGCATCTTAATCTCAACTAATT TTTGGCTTTGCTTAATCGCGTCATTCGTCTTTAACGTATTTTTTCTACCGT



consensusID : consensus_2339#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 476
fasta sequence
                              [CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACAAAGAGTAATCGAGGCTAACAGAATCTCCAAGTTAACAATGAGTGGTTGCCGTGTTTTCATTGGCCACTTGAGCCCCCACGCCAGAGAGAGGGACGTGGAGAAGTTCTTCAAGGGATACGGACGCATACGGGAAATCAACTTGAAGAATGGATTTGGCTTTGTGGAATTTGATGACCACAGAGATGCAGATGATGCCGTTTATGAACTGAATGGCAAAGAGTTGTGCAGTGAAAGGGTCACGATTGAGCATGCTCGCTCCAGGCGGGGCAGAGGTGGCGGCCCAGGAATGGGGCGCTTTGGTGGTGGTGGTGGTGGTGGTGGGGGCGGCGGAGGAGGAGGCGGCTATCGGCCCTCTCGCAGCAGCGGACCCAGATACGGCCCTCCTGTTCGCACTGAGCACAGACTCATTGTGGAGA]

[+] EMBL BU807425             [CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACAAAGAGTAATCGAGGCTAACAGAATCTCCAAGTTAACAATGAGTGGTTGCCGTGTTTTCATTGGCCACTTGAGCCCCCACGCCAGAGAGAGGGACGTGGAGAAGTTCTTCAAGGGATACGGACGCATACGGGAAATCAACTTGAAGAATGGATTTGGCTTTGTGGAATTTGATGACCACAGAGATGCAGATGATGCCGTTTATGAACTGAATGGCAAAGAGTTGTGCAGTGAAAGGGTCACGATTGAGCATGCTCGCTCCAGGCGGGGCAGAGGTGGCGGCCCAGGAATGGGGCGCTTTGGTGGTGGTGGTGGTGGTGGTGGGGGCGGCGGAGGAGGAGGCGGCTATCGGCCCTCTCGCAGCAGCGGACCCAGATACGGCCCTCCTGTTCGCACTGAGCACAGACTCATTGTGGAGA]
[+] EMBL BU808282             [CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACAAAGAGTAATCGAGGCTAACAGAATCTCCAAGTTAACAATGAGTGGTTGCCGTGTTTTCATTGGCCACTTGAGCCCCCACGCCAGAGAGAGGGACGTGGAGAAGTTCTTCAAGGGATACGGACGCATGCGGGAAATCAACTTGAAGAATGGATTTGGCTTTGTGGAATTTGATGACCACAGAGATGCTTATGATGCCGTTTATGAACTGAATGGCAAAGAGTTGTGCAGTGAAAGGGTCACGATTGAGCATGCTCGCTCCAGGCGGGGCAGAGGTGGCGGCCCAGGAATGGGGCGCTTTGGTGGTGGTGGTG                                                                                                         ]
[+] EMBL BU806227             [CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACAAAGAGTAATCGAGGCTAACAGAATCTCCAAGTTAACAATGAGTGGTTGCCGTGTTTTCATTGGCCACTTGAGCCCCCACGCCAGAGAGAGGGACGTGGAGAAGTTCTTCAAGGGATACGGACGCATACGGGAAATCAACTTGAAGAATGGATTTGGCTTTGTGGAATTTGATGACCTCTTAGATGCAGATGATGCCGTTTATGAACTGAATGGCAAAGAGTTGTGCAGTGAAAGGGTCACGATTGAGCATGCTCGCTCCAGGCGGGGCAGAGGTGGCGGCCCAGGAATGGGGCGCTTTGGTGG                                                                                                                 ]


>consensus_2339#1 CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACA AAGAGTAATCGAGGCTAACAGAATCTCCAAGTTAACAATGAGTGGTTGCCGTGTTTTCAT TGGCCACTTGAGCCCCCACGCCAGAGAGAGGGACGTGGAGAAGTTCTTCAAGGGATACGG ACGCATACGGGAAATCAACTTGAAGAATGGATTTGGCTTTGTGGAATTTGATGACCACAG AGATGCAGATGATGCCGTTTATGAACTGAATGGCAAAGAGTTGTGCAGTGAAAGGGTCAC GATTGAGCATGCTCGCTCCAGGCGGGGCAGAGGTGGCGGCCCAGGAATGGGGCGCTTTGG TGGTGGTGGTGGTGGTGGTGGGGGCGGCGGAGGAGGAGGCGGCTATCGGCCCTCTCGCAG CAGCGGACCCAGATACGGCCCTCCTGTTCGCACTGAGCACAGACTCATTGTGGAGA



consensusID : consensus_2339#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 93
fasta sequence
                              [CGAAAACCAGCGTAGCAGACGGTTAAACTTAGAGTAATCGAGGCTAACAGAAGGTCGGGGGTGAACGACAAAGGCGAAATAATGCGCCACTTT]

[+] EMBL FR0059314            [CGAAAACCAGCGTAGCAGACGGTTAAACTTAGAGTAATCGAGGCTAACAGAAGGTCGGGGGTGAACGACAAAGGCGAAATAATGCGCCACTTT]


>consensus_2339#2 CGAAAACCAGCGTAGCAGACGGTTAAACTTAGAGTAATCGAGGCTAACAGAAGGTCGGGG GTGAACGACAAAGGCGAAATAATGCGCCACTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2339#0      CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACA 60
consensus_2339#2      -------------------------------CGAAAACCAGCGTAGCAGACGGTTAAACT 29
consensus_2339#1      CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACA 60
                                                     **********************  **** 

consensus_2339#0      AAGAGTAATCGAGGCTAACAGAATCTCCAAGGTGAACGACAAAGGCGAAATAATGCGTCA 120
consensus_2339#2      TAGAGTAATCGAGGCTAACAGAAGGTCGGGGGTGAACGACAAAGGCGAAATAATGCGCCA 89
consensus_2339#1      AAGAGTAATCGAGGCTAACAGAATCTCCAAGTTAA----CAATGAGTGGTTGCCGTG--- 113
                       **********************  **   * * *    *** *      *   * *   

consensus_2339#0      CTTTTTATTGCGCCTAGAGGATTTGGGTGTTTTTCCGTGGTCGTTGGTGGCTAGCTCGCC 180
consensus_2339#2      CTTT-------------------------------------------------------- 93
consensus_2339#1      -TTTTCATTG-GCC------ACTTGAG----CCCCCA----CGCCAGAGAGAGGGACGT- 156
                       ***                                                        

consensus_2339#0      TGTGCTAGCAGGAGTCGACCTCGAGGCGAACAGCAGCCATCATGGCACTAAAGTAACAGG 240
consensus_2339#2      ------------------------------------------------------------
consensus_2339#1      -------GGAGAAGTT--CTTCAAGGGATACGGACGCATACGGGAAATCAACTTGAAGAA 207
                                                                                  

consensus_2339#0      CCGAACCAACCTAACGCAGTTTAAT--CCATAATTGAACAAGAG-TACAGTTTGGACGGA 297
consensus_2339#2      ------------------------------------------------------------
consensus_2339#1      TGGATTTGGCTTTGTGGAATTTGATGACCACAGAGATGCAGATGATGCCGTTT--ATGAA 265
                                                                                  

consensus_2339#0      CATATTTTGCGTTGTTTTTATTAACGTATATATTCCCATTGTTGGGGCGTGTT-GCCGCA 356
consensus_2339#2      ------------------------------------------------------------
consensus_2339#1      C-TGAATGGCAAAGAGTTGTGCAGTGAAAGGGTCACGATT----GAGCATGCTCGCTCCA 320
                                                                                  

consensus_2339#0      GCGAGAGCTGCTAGCTAGCATGCTACAACAAGGCCCGCCTCGTTGAATGATTCGATGGTT 416
consensus_2339#2      ------------------------------------------------------------
consensus_2339#1      GGCGGGGCAG--AGGTGGCGGCCCAGGA-ATGGGGCGCTTTGGTGG-TGGT--GGTGGTG 374
                                                                                  

consensus_2339#0      TCGGTGGTCATAATTTTAATAGAATAATATTGCTGATGTGACTAATCGACATGGTTTTGT 476
consensus_2339#2      ------------------------------------------------------------
consensus_2339#1      GTGGTGGGGGCGGCGGAGGAGGAGGCGGCTATCGGCCCTCTCGCAGCAGCGGACCCAGAT 434
                                                                                  

consensus_2339#0      ATGGTCCACCAGGCCTTGATGTGATTAAAACGGGGATACACGTGCATCTTAATCTCAACT 536
consensus_2339#2      ------------------------------------------------------------
consensus_2339#1      ACGGCCCTCCTGTTCGCACTGAGCACAGACTCATTGTGGAGA------------------ 476
                                                                                  

consensus_2339#0      AATTTTTGGCTTTGCTTAATCGCGTCATTCGTCTTTAACGTATTTTTTCTACCGT 591
consensus_2339#2      -------------------------------------------------------
consensus_2339#1      -------------------------------------------------------
                                                                             




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)