These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACAAAGAGTAATCGAGGCTAACAGAATCTCCAAGGTGAACGACAAAGGCGAAATAATGCGTCACTTTTTATTGCGCCTAGAGGATTTGGGTGTTTTTCCGTGGTCGTTGGTGGCTAGCTCGCCTGTGCTAGCAGGAGTCGACCTCGAGGCGAACAGCAGCCATCATGGCACTAAAGTAACAGGCCGAACCAACCTAACGCAGTTTAATCCATAATTGAACAAGAGTACAGTTTGGACGGACATATTTTGCGTTGTTTTTATTAACGTATATATTCCCATTGTTGGGGCGTGTTGCCGCAGCGAGAGCTGCTAGCTAGCATGCTACAACAAGGCCCGCCTCGTTGAATGATTCGATGGTTTCGGTGGTCATAATTTTAATAGAATAATATTGCTGATGTGACTAATCGACATGGTTTTGTATGGTCCACCAGGCCTTGATGTGATTAAAACGGGGATACACGTGCATCTTAATCTCAACTAATTTTTGGCTTTGCTTAATCGCGTCATTCGTCTTTAACGTATTTTTTCTACCGT] [+] EMBL CA589913 [CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACAAAGAGTAATCGAGGCTAACAGAATCTCCAAGGTGAACGACAAAGGCGAAATAATGCGTCACTTTTTATTGCGCCTAGAGGATTTGGGTGTTTTTCCGTGGTCGTTGGTGGCTAGCTCGCCTGTGCTAGCAGGAGTCGACCTCGAGGCGAACAGCAGCCATCATGGCACTAAAGTAACAGGCCGAACCAACCTAACGCAGTTTAATCCATAATTGAACAAGAGTACAGTTTGGACGGACATATTTTGCGTTGTTTTTATTAACGTATATATTCCCATTGTTGGGGCGTGTTGCCGCAGCGAGAGCTGCTAGCTAGCATGCTACAACAAGGCCCGCCTCGTTGAATGATTCGATGGTTTCGGTGGTCATAATTTTAATAGAATAATATTGCTGATGTGACTAATCGACATGGTTTTGTATGGTCCACCAGGCCTTGATGTGATTAAAACGGGGATACACGTGCATCTTAATCTCAACTAATTTTTGGCTTTGCTTAATCGCGTCATTCGTCTTTAACGTATTTTTTCTACCGT] consensusID : consensus_2339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 476 fasta sequence [CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACAAAGAGTAATCGAGGCTAACAGAATCTCCAAGTTAACAATGAGTGGTTGCCGTGTTTTCATTGGCCACTTGAGCCCCCACGCCAGAGAGAGGGACGTGGAGAAGTTCTTCAAGGGATACGGACGCATACGGGAAATCAACTTGAAGAATGGATTTGGCTTTGTGGAATTTGATGACCACAGAGATGCAGATGATGCCGTTTATGAACTGAATGGCAAAGAGTTGTGCAGTGAAAGGGTCACGATTGAGCATGCTCGCTCCAGGCGGGGCAGAGGTGGCGGCCCAGGAATGGGGCGCTTTGGTGGTGGTGGTGGTGGTGGTGGGGGCGGCGGAGGAGGAGGCGGCTATCGGCCCTCTCGCAGCAGCGGACCCAGATACGGCCCTCCTGTTCGCACTGAGCACAGACTCATTGTGGAGA] [+] EMBL BU807425 [CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACAAAGAGTAATCGAGGCTAACAGAATCTCCAAGTTAACAATGAGTGGTTGCCGTGTTTTCATTGGCCACTTGAGCCCCCACGCCAGAGAGAGGGACGTGGAGAAGTTCTTCAAGGGATACGGACGCATACGGGAAATCAACTTGAAGAATGGATTTGGCTTTGTGGAATTTGATGACCACAGAGATGCAGATGATGCCGTTTATGAACTGAATGGCAAAGAGTTGTGCAGTGAAAGGGTCACGATTGAGCATGCTCGCTCCAGGCGGGGCAGAGGTGGCGGCCCAGGAATGGGGCGCTTTGGTGGTGGTGGTGGTGGTGGTGGGGGCGGCGGAGGAGGAGGCGGCTATCGGCCCTCTCGCAGCAGCGGACCCAGATACGGCCCTCCTGTTCGCACTGAGCACAGACTCATTGTGGAGA] [+] EMBL BU808282 [CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACAAAGAGTAATCGAGGCTAACAGAATCTCCAAGTTAACAATGAGTGGTTGCCGTGTTTTCATTGGCCACTTGAGCCCCCACGCCAGAGAGAGGGACGTGGAGAAGTTCTTCAAGGGATACGGACGCATGCGGGAAATCAACTTGAAGAATGGATTTGGCTTTGTGGAATTTGATGACCACAGAGATGCTTATGATGCCGTTTATGAACTGAATGGCAAAGAGTTGTGCAGTGAAAGGGTCACGATTGAGCATGCTCGCTCCAGGCGGGGCAGAGGTGGCGGCCCAGGAATGGGGCGCTTTGGTGGTGGTGGTG ] [+] EMBL BU806227 [CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACAAAGAGTAATCGAGGCTAACAGAATCTCCAAGTTAACAATGAGTGGTTGCCGTGTTTTCATTGGCCACTTGAGCCCCCACGCCAGAGAGAGGGACGTGGAGAAGTTCTTCAAGGGATACGGACGCATACGGGAAATCAACTTGAAGAATGGATTTGGCTTTGTGGAATTTGATGACCTCTTAGATGCAGATGATGCCGTTTATGAACTGAATGGCAAAGAGTTGTGCAGTGAAAGGGTCACGATTGAGCATGCTCGCTCCAGGCGGGGCAGAGGTGGCGGCCCAGGAATGGGGCGCTTTGGTGG ] consensusID : consensus_2339#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 93 fasta sequence [CGAAAACCAGCGTAGCAGACGGTTAAACTTAGAGTAATCGAGGCTAACAGAAGGTCGGGGGTGAACGACAAAGGCGAAATAATGCGCCACTTT] [+] EMBL FR0059314 [CGAAAACCAGCGTAGCAGACGGTTAAACTTAGAGTAATCGAGGCTAACAGAAGGTCGGGGGTGAACGACAAAGGCGAAATAATGCGCCACTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2339#0 CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACA 60 consensus_2339#2 -------------------------------CGAAAACCAGCGTAGCAGACGGTTAAACT 29 consensus_2339#1 CTCGACAGTTAAAGGACGAGACTGAAGTTGGCGAAAACCAGCGTAGCAGACGGGAAAACA 60 ********************** **** consensus_2339#0 AAGAGTAATCGAGGCTAACAGAATCTCCAAGGTGAACGACAAAGGCGAAATAATGCGTCA 120 consensus_2339#2 TAGAGTAATCGAGGCTAACAGAAGGTCGGGGGTGAACGACAAAGGCGAAATAATGCGCCA 89 consensus_2339#1 AAGAGTAATCGAGGCTAACAGAATCTCCAAGTTAA----CAATGAGTGGTTGCCGTG--- 113 ********************** ** * * * *** * * * * consensus_2339#0 CTTTTTATTGCGCCTAGAGGATTTGGGTGTTTTTCCGTGGTCGTTGGTGGCTAGCTCGCC 180 consensus_2339#2 CTTT-------------------------------------------------------- 93 consensus_2339#1 -TTTTCATTG-GCC------ACTTGAG----CCCCCA----CGCCAGAGAGAGGGACGT- 156 *** consensus_2339#0 TGTGCTAGCAGGAGTCGACCTCGAGGCGAACAGCAGCCATCATGGCACTAAAGTAACAGG 240 consensus_2339#2 ------------------------------------------------------------ consensus_2339#1 -------GGAGAAGTT--CTTCAAGGGATACGGACGCATACGGGAAATCAACTTGAAGAA 207 consensus_2339#0 CCGAACCAACCTAACGCAGTTTAAT--CCATAATTGAACAAGAG-TACAGTTTGGACGGA 297 consensus_2339#2 ------------------------------------------------------------ consensus_2339#1 TGGATTTGGCTTTGTGGAATTTGATGACCACAGAGATGCAGATGATGCCGTTT--ATGAA 265 consensus_2339#0 CATATTTTGCGTTGTTTTTATTAACGTATATATTCCCATTGTTGGGGCGTGTT-GCCGCA 356 consensus_2339#2 ------------------------------------------------------------ consensus_2339#1 C-TGAATGGCAAAGAGTTGTGCAGTGAAAGGGTCACGATT----GAGCATGCTCGCTCCA 320 consensus_2339#0 GCGAGAGCTGCTAGCTAGCATGCTACAACAAGGCCCGCCTCGTTGAATGATTCGATGGTT 416 consensus_2339#2 ------------------------------------------------------------ consensus_2339#1 GGCGGGGCAG--AGGTGGCGGCCCAGGA-ATGGGGCGCTTTGGTGG-TGGT--GGTGGTG 374 consensus_2339#0 TCGGTGGTCATAATTTTAATAGAATAATATTGCTGATGTGACTAATCGACATGGTTTTGT 476 consensus_2339#2 ------------------------------------------------------------ consensus_2339#1 GTGGTGGGGGCGGCGGAGGAGGAGGCGGCTATCGGCCCTCTCGCAGCAGCGGACCCAGAT 434 consensus_2339#0 ATGGTCCACCAGGCCTTGATGTGATTAAAACGGGGATACACGTGCATCTTAATCTCAACT 536 consensus_2339#2 ------------------------------------------------------------ consensus_2339#1 ACGGCCCTCCTGTTCGCACTGAGCACAGACTCATTGTGGAGA------------------ 476 consensus_2339#0 AATTTTTGGCTTTGCTTAATCGCGTCATTCGTCTTTAACGTATTTTTTCTACCGT 591 consensus_2339#2 ------------------------------------------------------- consensus_2339#1 ------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |