|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2349#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 990 fasta sequence
[GGTGAAGGAAAAACAATCTTGTTAGGGAACATCAGCAAAGGAAAAGAAAGAACTTGAGTTTGAAGGGAGGAAGAGGCAAGAAGACAAAATATAGGGGGGGAGCAGAAACCAGGAAGGAGAAAAAGGTGCTTTGTGCTGTGTTCAAGAAACCCACCAACAGCAAATCTTCAAGACAGTCCTTCAAGCAACATTAATCTTTAAACACTGAGCAATATTCTCTATGATACAGGAAAGAACCACTTAACTTTATGATTAAATTTTCTTTTTAGAAAATTACAAGTAAAGAATTCCGAAAATTTCCCTGCCTGTAAAGAAATCTAGTTAAACAAAGTTTAAAAACCAAGTAAAAAAAAACACAAATTTTAAGGAAATGCCACCCAAAAAGAAAGCCTCCCGTCAGAAGAAGCCAGCCACGGAAAATATTTCTCAGGTCGCCATCAATACTTCTCCAGGACCCCTGAAGGTGGAGAACCGTGGCGACGGTGTGGTGGTGGTGGAGGCTGGGGTGAAGAAGATCGAGCAGATGGCGGCATTGGACATCGCCAAGCTGAACAGTCTGAACCTGCCCTTGCCGCCGCCAGCCATCAAGCCAGGAGAGAGAGGCC-TGGGACTGGGCAGTGAGTTGACACGACCCCAGCACGGCAATGCCCTGCTGGAGGAGCTCAGCAAGATGCGGCAAGAGAAGTTCCTGACTGACCTGGAGCTGGCCTGTAAGACAAAATCATTTGATGTCCATAAATTAGTAATCTCCTCCATCAGCCAGTACTTTCAGAGAGATTCTAGCCAAAGATCCAGGCATGAAGCGTCTGGAGCTCCCCTCCCTTTCACCTCTAGGCCTGGCCAATGTCATCACTTTCGCCTATCTGGGTCGTGTCCATATGTCCCTCTACACCATTGGCTGCACAGCCTCCGCAGCCACCACCCTGCAGATCCCCCAGCTCCTGAAGATGTGTGTGGACTTCCTGTTGGCTGAGCTCAATGTTCAAACTT]
[+] EMBL BU805048 [GGTGAAGGAAAAACAATCTTGTTAGGGAACATCAGCAAAGGAAAAGAAAGAACTTGAGTTTGAAGGGAGGAAGAGGCAAGAAGACAAAATATAGGGGGGGAGCAGAAACCAGGAAGGAGAAAAAGGTGCTTTGTGCTGTGTTCAAGAAACCCACCAACAGCAAATCTTCAAGACAGTCCTTCAAGCAACATTAATCTTTAAACACTGAGCAATATTCTCTATGATACAGGAAAGAACCACTTAACTTTATGATTAAATTTTCTTTTTAGAAAATTACAAGTAAAGAATTCCGAAAATTTCCCTGCCTGTAAAGAAATCTAGTTAAACAAAGTTTAAAAACCAAGTAAAAAAAAACACAAATTTTAAGGAAATGCCACCCAAAAAGAAAGCCTCCCGTCAGAAGAAGCCAGCCACGGAAAATATTTCTCAGGTCGCCATCAATACTTCTCCAGTACCCCTGAAGGTGGAGAACCGTGGCGACGGTGTGGTGGTGGTGGAGGCTGGGGTGAAGAAGATCGAGCAGATGGCGGCATTGGACATCGCCAAGCTGAACAGTCTGAACCTGCCCTTGCCGCCGCCAGCCATCAAGCCAGGAGAGAG ]
[+] EMBL BU805105 [ CCGTCAGAAGAAGCCAGCCACTGAAAATATTTCTCAGGTCGCCATCAATACTTCTCCAGTACCCCTGAAGGTGGAGAACCGTGGCGACGGTGTGGTGGTGGTGGAGGCTGGGGTGAAGAAGATCGAGCAGATGGCGGCATTGGACATCGCCAAGCTGAACAGTCTGAACCTGCCCTTGCCGCCGCCAGCCATCAAGCCAGGAGAGAGAGGCC TGGGACTGGGCAGTGATTTGACACGACCCCAGCACGGCAATGCCCTGCTGGAGGAGCTCAGCAAGATGCGGCAAGAGAAGTTCCTGACTGACCTGGAGCTGGCCTGTAAGACAAAATCATTTGATGTCCATAAATTAGTAATCTCCTCCATCAGCCAGTAC TTCAGAGAGATTCTAGCCAAAGATCCAGGCATGAAGCGTCTGGAGCTCCCCTCCCTTTCACCTCTAGGCCTGGCCAATGTCATCACTTTCGCCTATCTGGGTCGTGTCCATATGTCCCTCTACACCATTGGCTGCACAGCCTCCGCAGCCACCACCCTGCAGATCCCCCAGCTCCTGAAGATGTGTGTGGACTTCCTGTTGGCTGAGCTCAATGTTCAAACTT]
[+] EMBL FR0063730 [ CCACGGATAATATTTCTCAGGTCGCCATCAATACTTCTCCAGGGCCCCTGAAGGTGGAGAACCGTGCCGACGGTGTGGTGGTGGTGTAGTCTGGGGTGAAGAAGATCGAGCAGATGTCGGCATTGGACATCGCCAAGCTGAACAGTCTGAACCTGCCCTTGCCGCCGGCAGCCATCTAGCCAGGAGAGAGAGGCCGTGGTCTTGGTCAGTGAGATGACACGACCCCAGCACGTGAATGCCCTGCTGGAGGAGCTCATCAGGATGCGGTAAGAGAATGTCCTGACTGACCTGGAGCTGGCCTGTAAGACAAAATCA ]
[+] EMBL FR0063727 [ AAAATATTTCTCAGGTCGCCATCAATACTTCTCCAGGACCCCTGAAGGTGGAGAACCGTGGCGACGGTGTGGTGGTGGTGGAGGCTGGGGTGAAGAAGATCGAGCAGATGGCGGCATTGGACATCGCCAAGCTGAACAGTCTGAACCTGCCCTTGCCGCCGCCAGCCATCAAGCCAGGAGAGAGAGGCC TGGGACTGGGCAGTGAGTTGACACGACCCCAGCACGGCAATGCCCTGCTGGAGGAGCTCAGCAAGATGCGGCAAGAGAAGTTCCTGACTGACCTGGAGCTGGCCTGTAAGACAAAATCATTTGATGTCCATAAATTAGTAATCTCCTCCATCAGCCAGTACTTTCAGAG ]
consensusID : consensus_2349#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[ACATATTCAAGCACTTGCACACACAGCACACTAGCACAGAGGGGTGAAGGAAAAACAATCTTGTTAGGGAACATCAGCAAAGGAAAAGAAAGAACTTGAGTTTGAAAGGAGGAAGAGGCAAGAAGACAAAATATAGGGGGGGAGCAGAAACCAGGAAGGAGAAAAAGCTTTTACTGGATTTAGATGAAGGGCTCCGCACCATCTATATTGTTGTTTCCTGATCCGCAGAGATTCCTGGAGGAATATGGATCTGTCACTGGACTAGGTCAGGTGCTTTGTGCTGTGTTCAAGAAACCCACCAACAGCAAATCTTCAAGACAGTCCTTCAAGCAACATTAATCTTTAAACACTGAGCAATATTCTCTATGATACAGGAAAGAACCACTTAACTTTATGATTAAATTTTCTTTTTAGAAAATTACAAGTAAAGAATTCCGAAAATTTCCCTGCCTGTAAAGAAATCTAGTTAAACAAAGTTTAAAAACCAAGTAAAAAAAAAACACAAATTTTAAGGAAATGCCACCCAAAAAGAAAGCCTCCCGTCAGAAGAAGCCAGCCACGGAAAATATTTCTCAGGTCGCCATCAATACTTCTCCAGTACCCCTGAAGGTGGAGAACCGT]
[+] EMBL BU804874 [ACATATTCAAGCACTTGCACACACAGCACACTAGCACAGAGGGGTGAAGGAAAAACAATCTTGTTAGGGAACATCAGCAAAGGAAAAGAAAGAACTTGAGTTTGAAAGGAGGAAGAGGCAAGAAGACAAAATATAGGGGGGGAGCAGAAACCAGGAAGGAGAAAAAGCTTTTACTGGATTTAGATGAAGGGCTCCGCACCATCTATATTGTTGTTTCCTGATCCGCAGAGATTCCTGGAGGAATATGGATCTGTCACTGGACTAGGTCAGGTGCTTTGTGCTGTGTTCAAGAAACCCACCAACAGCAAATCTTCAAGACAGTCCTTCAAGCAACATTAATCTTTAAACACTGAGCAATATTCTCTATGATACAGGAAAGAACCACTTAACTTTATGATTAAATTTTCTTTTTAGAAAATTACAAGTAAAGAATTCCGAAAATTTCCCTGCCTGTAAAGAAATCTAGTTAAACAAAGTTTAAAAACCAAGTAAAAAAAAAACACAAATTTTAAGGAAATGCCACCCAAAAAGAAAGCCTCCCGTCAGAAGAAGCCAGCCACGGAAAATATTTCTCAGGTCGCCATCAATACTTCTCCAGTACCCCTGAAGGTGGAGAACCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2349#0 ------------------------------------------GGTGAAGGAAAAACAATC 18
consensus_2349#1 ACATATTCAAGCACTTGCACACACAGCACACTAGCACAGAGGGGTGAAGGAAAAACAATC 60
******************
consensus_2349#0 TTGTTAGGGAACATCAGCAAAGGAAAAGAAAGAACTTGAGTTTGAAGGGAGGAAGAGGCA 78
consensus_2349#1 TTGTTAGGGAACATCAGCAAAGGAAAAGAAAGAACTTGAGTTTGAAAGGAGGAAGAGGCA 120
********************************************** *************
consensus_2349#0 AGAAGACAAAATATAGGGGGGGAGCAGAAACCAGGAAGGAGAAAAAG------------- 125
consensus_2349#1 AGAAGACAAAATATAGGGGGGGAGCAGAAACCAGGAAGGAGAAAAAGCTTTTACTGGATT 180
***********************************************
consensus_2349#0 ------------------------------------------------------------
consensus_2349#1 TAGATGAAGGGCTCCGCACCATCTATATTGTTGTTTCCTGATCCGCAGAGATTCCTGGAG 240
consensus_2349#0 ------------------------------GTGCTTTGTGCTGTGTTCAAGAAACCCACC 155
consensus_2349#1 GAATATGGATCTGTCACTGGACTAGGTCAGGTGCTTTGTGCTGTGTTCAAGAAACCCACC 300
******************************
consensus_2349#0 AACAGCAAATCTTCAAGACAGTCCTTCAAGCAACATTAATCTTTAAACACTGAGCAATAT 215
consensus_2349#1 AACAGCAAATCTTCAAGACAGTCCTTCAAGCAACATTAATCTTTAAACACTGAGCAATAT 360
************************************************************
consensus_2349#0 TCTCTATGATACAGGAAAGAACCACTTAACTTTATGATTAAATTTTCTTTTTAGAAAATT 275
consensus_2349#1 TCTCTATGATACAGGAAAGAACCACTTAACTTTATGATTAAATTTTCTTTTTAGAAAATT 420
************************************************************
consensus_2349#0 ACAAGTAAAGAATTCCGAAAATTTCCCTGCCTGTAAAGAAATCTAGTTAAACAAAGTTTA 335
consensus_2349#1 ACAAGTAAAGAATTCCGAAAATTTCCCTGCCTGTAAAGAAATCTAGTTAAACAAAGTTTA 480
************************************************************
consensus_2349#0 AAAACCAAGTAAAAAAAAA-CACAAATTTTAAGGAAATGCCACCCAAAAAGAAAGCCTCC 394
consensus_2349#1 AAAACCAAGTAAAAAAAAAACACAAATTTTAAGGAAATGCCACCCAAAAAGAAAGCCTCC 540
******************* ****************************************
consensus_2349#0 CGTCAGAAGAAGCCAGCCACGGAAAATATTTCTCAGGTCGCCATCAATACTTCTCCAGGA 454
consensus_2349#1 CGTCAGAAGAAGCCAGCCACGGAAAATATTTCTCAGGTCGCCATCAATACTTCTCCAGTA 600
********************************************************** *
consensus_2349#0 CCCCTGAAGGTGGAGAACCGTGGCGACGGTGTGGTGGTGGTGGAGGCTGGGGTGAAGAAG 514
consensus_2349#1 CCCCTGAAGGTGGAGAACCGT--------------------------------------- 621
*********************
consensus_2349#0 ATCGAGCAGATGGCGGCATTGGACATCGCCAAGCTGAACAGTCTGAACCTGCCCTTGCCG 574
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 CCGCCAGCCATCAAGCCAGGAGAGAGAGGCCTGGGACTGGGCAGTGAGTTGACACGACCC 634
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 CAGCACGGCAATGCCCTGCTGGAGGAGCTCAGCAAGATGCGGCAAGAGAAGTTCCTGACT 694
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 GACCTGGAGCTGGCCTGTAAGACAAAATCATTTGATGTCCATAAATTAGTAATCTCCTCC 754
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 ATCAGCCAGTACTTTCAGAGAGATTCTAGCCAAAGATCCAGGCATGAAGCGTCTGGAGCT 814
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 CCCCTCCCTTTCACCTCTAGGCCTGGCCAATGTCATCACTTTCGCCTATCTGGGTCGTGT 874
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 CCATATGTCCCTCTACACCATTGGCTGCACAGCCTCCGCAGCCACCACCCTGCAGATCCC 934
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 CCAGCTCCTGAAGATGTGTGTGGACTTCCTGTTGGCTGAGCTCAATGTTCAAACTT 990
consensus_2349#1 --------------------------------------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |