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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 541 fasta sequence
[CTGTGGAACAACACCAACTCGGAGGATAAGCAGCCGTACGAGAAGAAGGCCAGCAAACTGAAGGAGAAGTACGAGAAGGACGTTGCTGCCTATCGCCAGAAGACCAAGGGGGGCTCCGGGTCGGCGGGAAAGGCCCCGGCCAAGGTGGAAAAGAAGGCCGAGGATGACGACGACGACGAGGACGAAGACGAGGACGAGGACGACGACGACGAGGATGAGGAGTAGATGGCGAGTGACATCGTGGTCATTTTCTTGTTTATAAAGCATTTAGCCCCCTTGTACACTCTCACTTACTGAAAGGAAATACATTAGTAAAGGGGTGACCCAGAAAGGCTGTGTATATCAGTTGTTTTTAGTGCTGTACAGTTTTCGTTCCTCTTCGTTTTGTGGAGGTAAGACTACACAAGTGTCGTGTCCGTATCTTTCCGCCAGTCTGAATTCCAGTGACAGTCTCTAGACCGCTGTCCTGCCTGGGACAGTGTAAAGGGGGGGGGGCTTTTAATATTTACCCTAGTTAGACGTGCACAGCACATAAGCCTTC]
[+] EMBL CA845205 [CTGTGGAACAACACCAACTCGGAGGATAAGCAGCCGTACGAGAAGAAGGCCAGCAAACTGAAGGAGAAGTACGAGAAGGACGTTGCTGCCTATCGCCAGAAGACCAAGGGGGGCTCCGGGTCGGCGGGAAAGGCCCCGGCCAAGGTGGAAAAGAAGGCCGAGGATGACGACGACGACGAGGACGAAGACGAGGACGAGGACGACGACGACGACGATGACGAGTAGATGGCGAGTGACATCGTGGTCATTTTCTTGTTTATAAAGCATTTAACCCCCTTGTACACTCTCACTTACTGAAAGGAAATACATTAGTAAAGGGGTGACCCAGAAAGGCTGTGTATATCAGTTGTTTTTA TGCTGTACAGTTTTCGTTCCTCTTCTTTTTGTATAGGTAACACTACACAAGTGTCGTGTCCGTATCTTTCCGCCAGTCTTATTTCCAGTGATAGTCTCTAGACCGCTATCCTGCCTGGTACAGTGTAAAGGGGGGGGGGCTTTTAATATTTACCCTAGTTAGACGTGCACAGCACATAAGCCTTC]
[+] EMBL FR0056769 [ GTCGGCGGGAAAGGCCCCGGCCAAGGTGGAAAAGAAGGCCGAGGATGACGACGACGACGAGGACGAAGACGAGGACGAGGACGACGACGACGAGGATGAGGAGTAGATGGCGAGTGACATCGTGGTCATTTTCTTGTTTATAAAGCATTTAGCCCCCTTGTACACTCTCACTTACTGAAAGGAAATACATTAGTAAAGGGGTGACCCAGAAAGGCTGTGTATATCAGTTGTTTTTAGTGCTGTACAGTTTTCGTTCCTCTTCGTTTTGTGGAGGTAAGACTACACAAGTGTCGTGTCCGTATCTTTCCGCCAGTCTGAATTCCAGTGACAGTCTCTAGACCGTTGTCCTGCCTGGGACA ]
consensusID : consensus_2432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 526 fasta sequence
[CATTGAGATCCAGCCTGAGTCCCTTGCCTTCAAGATGGGGAGAGATTCGGGGAGAGAAGCGGGAAAGCCTCGTGGCAAGATGTCCTCTTATGCATTTTTTGTCCAAACCTGTCGTGAAGAGCACAAGAAGAAGCACCCCGATGCTTCGGTTAACTTCTCGGAGTTCTCCA-GGAAGTGTTCTGAGCGATGGAAGACCATGTCTGTCAAGGAGAAGGGCAAGTTTGAGGACTTGGCCAAGCAGGACAAGGTCCGCTACGACCGGGAGATGATGGACTACGTCCCAGCTAAAGGAGGCAAGAAGAAGAAGAAGTTCAAGGACCCCAATGCCCCCAAGAGACCCCCATCCGCCTTCTTCATTTTCTGCTCAGAGTTTCG-CCCGAAGGTGAAGGGGGAGCACCCTGGTCTGACCATCGGGGAGGGGCGCAAGAAGCTGGGCGAGCTGTGGCATAGCACCAACTCGGAGGATAAGCAGCCGTACGAGAAGAAGGGCAGCAATCTGAAGGAGTCGTACGAGAAGGACGTTGCT]
[+] EMBL BU805806 [CATTGAGATCCAGCCTGAGTCCCTTGCCTTCAAGATGGGGAGAGATTCGGGGAGAGAAGCGGGAAAGCCTCGTGGCAAGATGTCCTCTT ]
[+] EMBL FR0063050 [ CTTGCCTTCAAGATGGGGAGAGATTCGGGGAGAGAAGCGGGAAAGCCTCGTGGCAAGATGTCCTCTTATGCATTTTTTGTCCAAACCTGTCGTGAAGAGCACAAGAAGAAGCACCCCGATGCTTCGGTTAACTTCTCGGAGTTCTCCA GGAAGTGTTCTGAGCGATGGAAGACCATGTCTGTCAAGGAGAAGGGCAAGTTTGAGGACTTGGCCAAGCAGGACAAGGTCCGCTACGACCGGGAGATGATGGACTACGTCCCAGCTAAAGGAGGCAAGAAGAAGAAGAAGTTCAAGGACCCCAATGCCCCCAAGAGACCCCCATCCGCCTTCTTCATTTTCTGCTCAGAGTTTCG CCCGAAGGTGAAGGGGGAGCACCCTGGTCTGACCATCGGGGAGGGG ]
[+] EMBL FR0062307 [ AGAGAAGCGTGAAAGCCTCGTGGCAAGATGTCCTCTTATGCATTTTTTGTCCAAACCTGTCGTGAAGAGCACAAGAAGAAGCACCCCGATGCTTCGGTTAACTTCTCGGAGTTCTCCA GGAAGTGTTCTGAGCGATGGAAGACCATGTCTGTCAAGGAGAAGGGCAAGTTTGAGGACTTGGCCAAGCAGGACAAGGTCCGCTACGACCGGGAGATGATGGACTACGTCCCAGCTAAAGGAGGCAAGAAGAAGAAGAAGTTCAAGGACCCCAATGCCCCCAAGAGACCCCCATCCGCCTTCTTCATTTTCTGCTCAGAGTTTCGCCCCGAAGTAGAAGGGGGAGCACCC ]
[+] EMBL FR0055578 [ GTCCAAACCTGTCGTGAACGAGACAAGATGTCGCACCACGATGCTTCGGTTAACTTCTCGCAGTTCTCCACAGAAGTGTTCTGAGCGATGGGAGACCATGTCTGTCACGGAGATCGCCAAGTTTGAGGACTTGGGCAAGCAGGACAAGGTCCGCTACGACCGGGAGATGATGGACTACGTCCCAGCTAAAGGAGGCAAGAAGAAGAAGAAGTTCAAGGACCCCAATGTCCCCAAGAGACCCCCATCCGCCTTCTTCATTTTCTGCTCAGAGTTTCG CCCGAAGGTGAAGGGAGAGCACCCTGGTCTGACCATCGCAGAGGTGCGCAAGAAGCTGGGCGAGCTGTGGCATAGCACCAACTCGGAGGATAAGCAGCCGTACGAGAAGAAGGGCAGCAATCTGAAGGAGTCGTACGAGAAGGACGTTGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2432#0 ---------CTGTGGAACAACACCAACTCGGAGGATAAGCAGCCGTACGAGAAGAAGGCC 51
consensus_2432#1 CATTGAGATCCAGCCTGAGTCCCTTGCCTTCAAGATGGGGAGAGATTCGGGGAGAGAAGC 60
* * * * * *** * ** * ** * *** *
consensus_2432#0 AGCAAA--CTGAAGG--AGAAGTACGAGAAGGACGTTGCTGCCTA---TCGCCA-GAAGA 103
consensus_2432#1 GGGAAAGCCTCGTGGCAAGATGTCCTCTTATGCATTTTTTGTCCAAACCTGTCGTGAAGA 120
* *** ** ** *** ** * * * ** ** * * * * *****
consensus_2432#0 CCAAGGGGGGCTCCGGGTCGGCGGGAAAGGCCCCGGCCAAGGTGGAAAAGAAGGCCGAGG 163
consensus_2432#1 GCACAAGAAGAAGCACCCCGATG-------CTTCGGTTAACTTCTCGGAGTTCTCCAGGA 173
** * * * ** * * *** ** * ** ** *
consensus_2432#0 ATGACGACGACGACGAGGACGAAGACGAGGAC-GAGGACGACGACGACGAGGATGAGGAG 222
consensus_2432#1 AGTGTTCTGA--GCGATG--GAAGACCATGTCTGTCAAGGAGAAGGGCAAGTTTGAGGAC 229
* ** *** * ****** * * * * * ** * * * ** ******
consensus_2432#0 TAGATGGCGAGTGACATCGTGGTCATTTTCTTGTTTATAAAGCATTTAGCCCCCTTGTAC 282
consensus_2432#1 TTGGCCAAGCAGGACAAGGTCCGCTACGACCGGGAGATGATGGACTACGTCCCAGCTAAA 289
* * * **** ** * * * ** * * * * * *** *
consensus_2432#0 ACTCTCACTTACTGAAAGGAAATACATTAGTAAAGGGGTGACCCAGAAAGGCTGTGTATA 342
consensus_2432#1 GGAGGCA---AGAAGAAGAAGAAGTTCAAGGACCCCAATGCCCCCAAGAGACCCC---CA 343
** * *** * * ** * ** *** * ** * *
consensus_2432#0 TCAGTTGTTTTTAGTG-CTGTACAGTTTTCGTTCCTCTTCGTTTTGTGGAGGTAAGACTA 401
consensus_2432#1 TCCGCCTTCTTCATTTTCTGCTCAGAGTTT-CGCCCGAAGGTGAAGGGGGAGCACCCTGG 402
** * * ** * * *** *** ** ** ** * ** * *
consensus_2432#0 CACAAGTGTCGTGTCCGTATCTTTCCGCCAGTCTGAATTCCAGTGACAGTCTCTAGACCG 461
consensus_2432#1 TCTGACCATCGGGGAGGGGCGCAAGAAGCTGGGCGAGCTGTGGC-ATAGCACCAACTCGG 461
* *** * * * * ** * * * ** * * * *
consensus_2432#0 CTGTCCTGCCTGGGACAGTGTAAAGGGGGGGGGGCTTTTAATATTTACCCTAGTTAGACG 521
consensus_2432#1 AGGATAAGCAGCCGTACGAGAAGAAGGGCAGCAATCTGAAGGAGTCGTACGAGAAGGACG 521
* ** * * * * * *** * * * * * * ** ****
consensus_2432#0 TGCACAGCACATAAGCCTTC 541
consensus_2432#1 TTGCT--------------- 526
*
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |