These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2441#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 824 fasta sequence [GCGAGTTTGTTCACTTTCGCAGTTCTTCGCTCTTCCCAGACATCACCACAGAGCAAAGAAAATGGACAATAGTGGCAAAGAAAAGGAGGCCATGGCTTTAATAGCTGAGGCAGAAAAGAAAATGAGATCGTCACAGTCGTTTTTTGGAGCACTGTTTGGGGGATCCTCCAGGATGGAAGAGGCCTGTGACTTGTATGTGCGGGCAGCCAACATGTACAAAATGGCCAAAAATTGGTGTGCTGCGGGAAATGCCTTCTCTGAAGCTGCACGGCTCCATCTTCAGATGCAGAGCAAACACGATGCTGCTACTAACTTCATAGATGCTGGGAATGCCTTCAAAAAAGCAGATCCACAAGAAGCTATAAACTGCCTAAACAGAGCTATTGAGATATACACTGATATGGGACGCTTCGTCATCGCAGCCAAACATCATATGCACATCGCTGAAATATATGAGACAGAGCTGATTGACGTTGATAAGGCCATTGCCCATTATGAACAAGCAGGAGATTATTACAAAGGTGAAGAATCTATCAGTTCAGCAAACAAGTGCCTCCTGAAAGTAGCCACTTATGCAGCACAGTTGGAGCAGTACCCAAAAGCCATCGAGATCTTTGAACAGGTTGGAACCTACGCTATGGACAGCACACTTCTCAAATACAGTGCCAAGGATTACTTCTTCAAGGCAGCCCTCTGTCACTTCTGTGTAGACATGCTGAACGCAAAACTTGCAGAGCAGCAGTCTACAGAAATGTTTCCAGCCTTCTCGGACTCTCGCGAATGGAAACTGTTGAGGAAACTTCTAGATGCCTACGATGAGCAGA] [+] EMBL CA590177 [GCGAGTTTGTTCACTTTCGCAGTTCTTCGCTCTTCCCATACATCCCCACAGAGCAAAGAAAATGGACAATAGTGGCAAAGAAAAGGAGGCCATGGCTTTAATAGCTGAGGCAGAAAAGAAAATGAGATCGTCACAGTCGTTTTTTGGAGCACTGTTTGGGGGATCCTCCAGGATGGAAGAGGCCTGTGACTTGTATGTGCGGGCAGCCAACATGTACAAAATGGCCAAAAATTGGTGTGCTGCGGGATATGCCTTCTCTGAAGCTGCACGGCTCCATCTTCAGATGCAGAGCAAACACGATGCTGCTACTAACTTCATAGATGCTGGAAATGCCTTCAAAAAAGCAGATCCACAAGAAGCTATAAACTGCCTAAACAGAGCTATTGAGATATACACTGATATGGGACGCTTCGTCATCGCAGCCAAACATCATATGCACATCGCTGAAATATATGAGACAGA ] [+] EMBL BU805584 [ TTGTTCACTTTCGCAGTTCTTCGCTCTTCCCAGACTTCACCACAGAGCAAAGAAAATGGACAATAGTGGCAAAGAAAAGGAGGCCATGGCTTTAATAGCTGAGGCAGAAAAGAAAATGAGATCGTCACAGTCGTTTTTTGGAGCACTGTTTGGGGGATCCTCCAAGATGGAAGAGGCCTGTGACTTGTATGTGCGGGCAGCCAACATGTACAAAATGGCCAAAAATTGGTGTGCTGCGGGAAATGCCTTCTCTGAAGCTGCACGGCTCCATCTTCAGATGCAGAGCAAACACGATGCTGCTACTAACTTCATAGATGCTGGGAATGCCTTCAAAAAAGCAGATCCACAAGAAGCTATAAACTGCCTAAACAGAGCTATTGAGATATACACTGATATGGGACGCTTCGTCATCGCAGCCAAACATCATATGCACATCGCTGAAATATATGAGACAGAGCTGATTGACGTTGATAAGGCCATTGCCCATTATGAACAAGCAGGAGATTATTACAAAGGTGAAGAATCTATCAGTTCAGCAAACAAGTGCCTCCTGAAAGTAGCCACTTATGCAGCACAGTTGGAGCAGTACCCAAAAGCCATCGAGATCTTT ] [+] EMBL FR0056070 [ AGATTATTACAAAGGTGAAGAATCTATCAGTTCAGCAAACAAGTGCCTCCTGAAAGTAGCCACTTATGCAGCACAGTTGGAGCAGTACCCAACAGCCATCGAGATCTTTGAACAGGTTGGAACCTACGCTATGGACAGCACACTTCTCAAATACAGTGCCAAGGATTACTTCTTCAAGGCAGCCCTCTGTCACTTCTGTGTAGACATGCTGAACGCAAAACTTGCAGAGCAGCAGTCTACAGAAATGTTTCCAGCCTTCTCGGACTCTCGCGAATGGAAACTGTTGAGGAAACTTCTAGATGCCTACGATGAGCAGA] consensusID : consensus_2441#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 598 fasta sequence [GAGACTGCGTGGTGCATCTCTCCACCGACGCAACAATCTCCACTCATACACCCAAAAGTGCCTATGAAAAGGAACATCATTTTCCACCTCTAAAAGACTAGGGATGATAGGCATTGCTCAGAGATCGCAGAAGCAGTACGCAGGATATGAATGGAGACCCTGCAGGCGGCTTGCAACATGCTAGCTGCTGTTTTCAAAGAGACATCACCACAGAGCAAAGAAAATGGACAATAGTGGCAAAGAAAAGGAGGCCATGGCTTTAATAGCTGAGGCAGAAAAGAAAATGAGATCGTCACAGTCGTTTTTTGGAGCACTGTTTGGGGGATCCTCCAAGATGGAAGAGGCCTGTGACTTGTATGTGCGGGCAGCCAACATGTACAAAATGGCCAAAAATTGGTGTGCTGCGGGAAATGCCTTCTCTGAAGCTGCACGGCTCCATCTTCAGATGCAGAGCAAACACGATGCTGCTACTAACTTCATAGATGCTGGAAATGCCTTCAAAAAAGCAGATCCACAAGAAGCTATAAACTGCCTAGACAGAGCTATTGGGATATACACTGATATGGGACGCTTCGTCATCGCAGCCAAACATCATATG] [+] EMBL CA590455 [GAGACTGCGTGGTGCATCTCTCCACCGACGCAACAATCTCCACTCATACACCCAAAAGTGCCTATGAAAAGGAACATCATTTTCCACCTCTAAAAGACTAGGGATGATAGGCATTGCTCAGAGATCGCAGAAGCAGTACGCAGGATATGAATGGAGACCCTGCAGGCGGCTTGCAACATGCTAGCTGCTGTTTTCAAAGAGACATCACCACAGAGCAAAGAAAATGGACAATAGTGGCAAAGAAAAGGAGGCCATGGCTTTAATAGCTGAGGCAGAAAAGAAAATGAGATCGTCACAGTCGTTTTTTGGAGCACTGTTTGGGGGATCCTCCAAGATGGAAGAGGCCTGTGACTTGTATGTGCGGGCAGCCAACATGTACAAAATGGCCAAAAATTGGTGTGCTGCGGGAAATGCCTTCTCTGAAGCTGCACGGCTCCATCTTCAGATGCAGAGCAAACACGATGCTGCTACTAACTTCATAGATGCTGGAAATGCCTTCAAAAAAGCAGATCCACAAGAAGCTATAAACTGCCTAAACAGAGCTATTGAGATATACACTGATATGGGACGCTTCGTCATCGCAGCCAAACATCATATG] [+] EMBL FR0059211 [ AATGGACTTTAGTGGCAAAGAAGAGGAGTTCATGGCTTTAATATCTGAGGCCGAAAAGAAAATGAGATCGTCACAGTCGTTTTTTGGAGCACTGTTTGGGGGATCCTCCAAGATGGAAGAGGCCTGTGACTTGTATGTGCGGGCAGCCAACATGTACAAAATGGCCAAAAATTGGTGTGCTGCGGGAAATGCCTTCTCTGAAGCTGCACGGCTCCATCTTCAGATGCAGAGCAAACACGATGCTGCTACTAACTTCATAGATGCTGGAAATGCCTTCAAAAAAGCAGATCCACAAGAAGCTATAAACTGCCTAGACAGAGCTATTGGGATA ] [+] EMBL FR0059067 [ GGTCAATAGTGGCAAAGAAAAGGAGGCCATGGCTTTAATAGCTGAGGCAGAAAAGAAAATGAGATCGTCACAGTCGTTTTTTGGAGCACTGTTTGGGGGATCCTCCAAGATGGAAGAGGCCTGTGACTTGTATGTGCGGGCAGCCAACATGTACAAAATGGCCAAAAATTGGTGTGCTGCGGGAAATGCCTTCTCTGAAGCTGCACGGCTCCATCTTCAGATGCAGAGCAAACACGATGCTGCTACTAACTTCATAGATGCTGGAAATGCCTTCAAAAAAGCAGATCCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2441#0 ------------------------------------------------------------ consensus_2441#1 GAGACTGCGTGGTGCATCTCTCCACCGACGCAACAATCTCCACTCATACACCCAAAAGTG 60 consensus_2441#0 ------------------------------------------------------------ consensus_2441#1 CCTATGAAAAGGAACATCATTTTCCACCTCTAAAAGACTAGGGATGATAGGCATTGCTCA 120 consensus_2441#0 -----------------------------------------GCGAGTTTGTT-CACTTTC 18 consensus_2441#1 GAGATCGCAGAAGCAGTACGCAGGATATGAATGGAGACCCTGCAGGCGGCTTGCAACATG 180 ** * ** ** * consensus_2441#0 GCAGTTCTTCGCTCTTCCCAGACATCACCACAGAGCAAAGAAAATGGACAATAGTGGCAA 78 consensus_2441#1 CTAGCTGCTGTTTTCAAAGAGACATCACCACAGAGCAAAGAAAATGGACAATAGTGGCAA 240 ** * * * ***************************************** consensus_2441#0 AGAAAAGGAGGCCATGGCTTTAATAGCTGAGGCAGAAAAGAAAATGAGATCGTCACAGTC 138 consensus_2441#1 AGAAAAGGAGGCCATGGCTTTAATAGCTGAGGCAGAAAAGAAAATGAGATCGTCACAGTC 300 ************************************************************ consensus_2441#0 GTTTTTTGGAGCACTGTTTGGGGGATCCTCCAGGATGGAAGAGGCCTGTGACTTGTATGT 198 consensus_2441#1 GTTTTTTGGAGCACTGTTTGGGGGATCCTCCAAGATGGAAGAGGCCTGTGACTTGTATGT 360 ******************************** *************************** consensus_2441#0 GCGGGCAGCCAACATGTACAAAATGGCCAAAAATTGGTGTGCTGCGGGAAATGCCTTCTC 258 consensus_2441#1 GCGGGCAGCCAACATGTACAAAATGGCCAAAAATTGGTGTGCTGCGGGAAATGCCTTCTC 420 ************************************************************ consensus_2441#0 TGAAGCTGCACGGCTCCATCTTCAGATGCAGAGCAAACACGATGCTGCTACTAACTTCAT 318 consensus_2441#1 TGAAGCTGCACGGCTCCATCTTCAGATGCAGAGCAAACACGATGCTGCTACTAACTTCAT 480 ************************************************************ consensus_2441#0 AGATGCTGGGAATGCCTTCAAAAAAGCAGATCCACAAGAAGCTATAAACTGCCTAAACAG 378 consensus_2441#1 AGATGCTGGAAATGCCTTCAAAAAAGCAGATCCACAAGAAGCTATAAACTGCCTAGACAG 540 ********* ********************************************* **** consensus_2441#0 AGCTATTGAGATATACACTGATATGGGACGCTTCGTCATCGCAGCCAAACATCATATGCA 438 consensus_2441#1 AGCTATTGGGATATACACTGATATGGGACGCTTCGTCATCGCAGCCAAACATCATATG-- 598 ******** ************************************************* consensus_2441#0 CATCGCTGAAATATATGAGACAGAGCTGATTGACGTTGATAAGGCCATTGCCCATTATGA 498 consensus_2441#1 ------------------------------------------------------------ consensus_2441#0 ACAAGCAGGAGATTATTACAAAGGTGAAGAATCTATCAGTTCAGCAAACAAGTGCCTCCT 558 consensus_2441#1 ------------------------------------------------------------ consensus_2441#0 GAAAGTAGCCACTTATGCAGCACAGTTGGAGCAGTACCCAAAAGCCATCGAGATCTTTGA 618 consensus_2441#1 ------------------------------------------------------------ consensus_2441#0 ACAGGTTGGAACCTACGCTATGGACAGCACACTTCTCAAATACAGTGCCAAGGATTACTT 678 consensus_2441#1 ------------------------------------------------------------ consensus_2441#0 CTTCAAGGCAGCCCTCTGTCACTTCTGTGTAGACATGCTGAACGCAAAACTTGCAGAGCA 738 consensus_2441#1 ------------------------------------------------------------ consensus_2441#0 GCAGTCTACAGAAATGTTTCCAGCCTTCTCGGACTCTCGCGAATGGAAACTGTTGAGGAA 798 consensus_2441#1 ------------------------------------------------------------ consensus_2441#0 ACTTCTAGATGCCTACGATGAGCAGA 824 consensus_2441#1 -------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |